Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_024160085.1/fasta/hub_GCA_024160085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           2477763
Total number of identified SSRs:                 24
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	2
4	1
5	8
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2			2
TC	-	-	-	1			1
CAG	-	-	1				1
CCG	-	-		1			1
CAGT	-				1		1
CGCAG	1						1
GATGT	1						1
GCATC	1						1
GCTGG	1						1
GGCAC	1						1
GGGGT	1						1
TGACC	1						1
TTTAT	1						1
CAGCCG		1					1
CAGTTG				1			1
CGATAT	1						1
CTACTG			1				1
CTATTG						1	1
CTGTTG		1					1
GCAAGG		1					1
TCGGCA	1						1
TGGCGA				1			1
TTCTCC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-	1			1
CG/CG	-	-	-	2			2
AGC/CTG	-	-	1				1
CCG/CGG	-	-		1			1
ACTG/AGTC	-				1		1
AAAAT/ATTTT	1						1
ACATC/ATGTG	1						1
ACCCC/GGGGT	1						1
ACCTG/AGGTC	1						1
ACGGC/CCGTG	1						1
AGCCC/CTGGG	1						1
AGCGC/CGCTG	1						1
ATCGC/ATGCG	1						1
AACAGC/CTGTTG		1					1
AACTGC/AGTTGC				1			1
AAGGAG/CCTTCT	1						1
AAGGGC/CCCTTG		1					1
AATAGC/ATTGCT						1	1
ACTGCT/AGCAGT			1				1
AGCCGC/CGGCTG		1					1
ATATCG/ATATCG	1						1
ATCGCC/ATGGCG				1			1
ATCGGC/ATGCCG	1						1
