Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-10/megassr/results/hub_GCA_023286685.1/fasta/hub_GCA_023286685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              143
Total size of examined sequences (bp):           4698051
Total number of identified SSRs:                 24
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	8
4	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	3								3
GC	-	-	-	1								1
CCG	-	-	2									2
CTG	-	-									1	1
CTT	-	-	1									1
GCC	-	-	1									1
GCG	-	-	1									1
GCT	-	-	2									2
TGGC	-	1										1
AAAAT	1											1
CGCGC	1											1
GGCGC	1											1
CAACCG	1											1
CACCAT			1									1
CACGAC						1						1
CAGGTC	1											1
CGACTT	1											1
CTGGCG	1											1
GCCAGC	1											1
TTTTTA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	4								4
AAG/CTT	-	-	1									1
AGC/CTG	-	-	2								1	3
CCG/CGG	-	-	4									4
AGCC/CTGG	-	1										1
AAAAT/ATTTT	1											1
CCGCG/CGCGG	2											2
AAAAAT/ATTTTT	1											1
AACCGC/CGGTTG	1											1
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT						1						1
ACCATC/ATGGTG			1									1
ACCTGG/AGGTCC	1											1
AGCGCC/CGCTGG	2											2
