Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_022817525.1/fasta/hub_GCA_022817525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              107864
Total size of examined sequences (bp):           62733699
Total number of identified SSRs:                 10219
Number of SSR containing sequences:              8898
Number of sequences containing more than 1 SSR:  974
Number of SSRs present in compound formation:    874


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	488
2	3725
3	1781
4	1216
5	2455
6	554

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	30	12	15	9	16	9	2	4	2	2	3	3	1		1				1	1			2		1					1		1	1			1	2					2	1				1									1					1									1																																																																																																																																																																							127
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11	7	7	3	6	5	7	2	3		1	2	2	1	3	1	3	1	3								1					1		1	1		1				1	1											2												1				2								2				1																										1																																																																																																																																		84
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11	10	6	3	6	4	6	3	2	4	4	2	1		3	4		1	1			2	2	3	2		3	2		2	2			1						1		2						1		1				1	1						1						1	1				1						1															1								2																																																																							1																																																																1	107
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	22	29	14	10	16	6	12	5	5	7	4	5	2	1	3	2	1	1	2						1	1	2						2	3							1			1	2					1						1	1									1		1				1				1																					1																																									1																																																					1																																														170
AC	-	-	-	34	13	15	7	4	2	5	1	1																																																																																																																																																																																																																																																		82
AG	-	-	-	46	23	27	13	7	4	1	6	1	1									1	1	1								1																																																																																																																																																																																																																														133
AT	-	-	-	555	351	210	122	79	48	27	13	17	11	6	2	4	2	2	2	2																																																																																																																																																																																																																																										1453
CA	-	-	-	24	15	10	6		7		2	1			1																																																																																																																																																																																																																																															66
CG	-	-	-	28	9	2		1																																																																																																																																																																																																																																																						40
CT	-	-	-	37	27	18	14	1	2		1	2			1				1																																																																																																																																																																																																																																											104
GA	-	-	-	37	26	18	7	4	2	2	3	1			3		1			1																																																																																																																																																																																																																																										105
GC	-	-	-	24	11	2	1																																																																																																																																																																																																																																																							38
GT	-	-	-	38	10	10	7	5	4	2	1				2		1			1			1																																																																																																																																																																																																																																							82
TA	-	-	-	562	288	167	113	72	38	28	29	19	9	6	6	2	3	2			2																																																																																																																																																																																																																																									1346
TC	-	-	-	70	33	18	10	9	5	1	4		2	1				1			2																																																																																																																																																																																																																																									156
TG	-	-	-	48	18	17	12	4	5	3	2	1	3		1				1	2	1							1	1																																																																																																																																																																																																																																	120
AAC	-	-	14	5	1	1	2		1						1																																																																																																																																																																																																																																															25
AAG	-	-	11	6	1	2				1																																																																																																																																																																																																																																																				21
AAT	-	-	137	40	23	15	5	2	1	2		2	1		1													1																																																																																																																																																																																																																																		230
ACA	-	-	9	5	2	1	1																																																																																																																																																																																																																																																							18
ACC	-	-	1																																																																																																																																																																																																																																																											1
ACG	-	-	2	2	1																																																																																																																																																																																																																																																									5
ACT	-	-				1																																																																																																																																																																																																																																																								1
AGA	-	-	8	2	2		2																																																																																																																																																																																																																																																							14
AGC	-	-	1		1																																																																																																																																																																																																																																																									2
AGG	-	-	3		1		1																																																																																																																																																																																																																																																							5
AGT	-	-	1																																																																																																																																																																																																																																																											1
ATA	-	-	144	44	18	11	7	3	4	2	2		2							1																																																																																																																																																																																																																																										238
ATC	-	-	7		2	1																																																																																																																																																																																																																																																								10
ATG	-	-	7	1	1																																																																																																																																																																																																																																																									9
ATT	-	-	153	55	28	6	9	3	2	2	2	1																																																																																																																																																																																																																																																		261
CAA	-	-	8	3		1		1																																																																																																																																																																																																																																																						13
CAC	-	-						1																																																																																																																																																																																																																																																						1
CAG	-	-		1				1																																																																																																																																																																																																																																																						2
CAT	-	-	2	2	1		1	1																																																																																																																																																																																																																																																						7
CCG	-	-	3	1																																																																																																																																																																																																																																																										4
CCT	-	-		3			1			1																																																																																																																																																																																																																																																				5
CGA	-	-		1																																																																																																																																																																																																																																																										1
CGC	-	-	1	1																																																																																																																																																																																																																																																										2
CGT	-	-	1				1																																																																																																																																																																																																																																																							2
CTA	-	-	3																																																																																																																																																																																																																																																											3
CTC	-	-	3	1																																																																																																																																																																																																																																																										4
CTG	-	-	1																																																																																																																																																																																																																																																											1
CTT	-	-	7	3	2				1																																																																																																																																																																																																																																																					13
GAA	-	-	10	1	5	1																																																																																																																																																																																																																																																								17
GAC	-	-	1			1																																																																																																																																																																																																																																																								2
GAG	-	-	4		1		1			1																																																																																																																																																																																																																																																				7
GAT	-	-	5	3																																																																																																																																																																																																																																																										8
GCA	-	-		1																																																																																																																																																																																																																																																										1
GCG	-	-		1																																																																																																																																																																																																																																																										1
GCT	-	-	7	1				1					1																																																																																																																																																																																																																																																	10
GGA	-	-			1																																																																																																																																																																																																																																																									1
GGC	-	-	1																																																																																																																																																																																																																																																											1
GGT	-	-	3	1																																																																																																																																																																																																																																																										4
GTA	-	-	1	2	1																																																																																																																																																																																																																																																									4
GTC	-	-	5		2				1		1																																																																																																																																																																																																																																																			9
GTG	-	-	1	1																																																																																																																																																																																																																																																										2
GTT	-	-	6	1		1							1																																																																																																																																																																																																																																																	9
TAA	-	-	117	46	15	11	5	2	1	1	1																																																																																																																																																																																																																																																			199
TAC	-	-	1	1																																																																																																																																																																																																																																																										2
TAG	-	-	1	1			1																																																																																																																																																																																																																																																							3
TAT	-	-	152	61	25	6	7	3		3	1	1			2																	1																																																																																																																																																																																																																														262
TCA	-	-	8	2	1													1							1																																																																																																																																																																																																																																					13
TCC	-	-	3	1		1																																																																																																																																																																																																																																																								5
TCG	-	-	2	1																																																																																																																																																																																																																																																										3
TCT	-	-	6		1									1																																																																																																																																																																																																																																																8
TGA	-	-	2		1						1																																																																																																																																																																																																																																																			4
TGC	-	-	1					1	1																																																																																																																																																																																																																																																					3
TGT	-	-	10	4	5	1	1					1																																																																																																																																																																																																																																																		22
TTA	-	-	140	45	20	9	6	6	1	2		3							1																																																																																																																																																																																																																																											233
TTC	-	-	10	4	1		2	1	1																																																																																																																																																																																																																																																					19
TTG	-	-	19	7	2	1			1																																																																																																																																																																																																																																																					30
AAAC	-	12	2																																																																																																																																																																																																																																																											14
AAAG	-	3		1																																																																																																																																																																																																																																																										4
AAAT	-	77	12	6																																																																																																																																																																																																																																																										95
AACA	-	1			1																																																																																																																																																																																																																																																									2
AACG	-	1																																																																																																																																																																																																																																																												1
AAGG	-				1																																																																																																																																																																																																																																																									1
AAGT	-	3																																																																																																																																																																																																																																																												3
AATA	-	69	17	3	1			1	1																																																																																																																																																																																																																																																					92
AATC	-	4	1																																																																																																																																																																																																																																																											5
AATG	-	5	1																																																																																																																																																																																																																																																											6
AATT	-	49	13	2																																																																																																																																																																																																																																																										64
ACAT	-	5																																																																																																																																																																																																																																																												5
ACCT	-	1																																																																																																																																																																																																																																																												1
ACGG	-	1																																																																																																																																																																																																																																																												1
ACTG	-		1																																																																																																																																																																																																																																																											1
ACTT	-			1																																																																																																																																																																																																																																																										1
AGAC	-	1																																																																																																																																																																																																																																																												1
AGAT	-	7	7	5	1	2	3	1			1		1			1		1																																																																																																																																																																																																																																												30
AGTC	-	1																																																																																																																																																																																																																																																												1
AGTT	-	1																																																																																																																																																																																																																																																												1
ATAA	-	58	16	2		1																																																																																																																																																																																																																																																								77
ATAC	-	3	1																																																																																																																																																																																																																																																											4
ATAG	-	4					1															1																																																																																																																																																																																																																																								6
ATCA	-	2																																																																																																																																																																																																																																																												2
ATCC	-	1																																																																																																																																																																																																																																																												1
ATCT	-	2																																																																																																																																																																																																																																																												2
ATGA	-	1																																																																																																																																																																																																																																																												1
ATGC	-	1																																																																																																																																																																																																																																																												1
ATGT	-		1																																																																																																																																																																																																																																																											1
ATTA	-	41	12	2	1																																																																																																																																																																																																																																																									56
ATTC	-	3	1																																																																																																																																																																																																																																																											4
ATTG	-	2																																																																																																																																																																																																																																																												2
ATTT	-	68	14	3	1	1			1																																																																																																																																																																																																																																																					88
CAAA	-	3																																																																																																																																																																																																																																																												3
CAAT	-	1	1																																																																																																																																																																																																																																																											2
CACG	-	2																						1																																																																																																																																																																																																																																						3
CATA	-	2																																																																																																																																																																																																																																																												2
CATC	-	1	1		1																																																																																																																																																																																																																																																									3
CATT	-	2																																																																																																																																																																																																																																																												2
CCAG	-		1																																																																																																																																																																																																																																																											1
CCAT	-	1																																																																																																																																																																																																																																																												1
CCCT	-		1																																																																																																																																																																																																																																																											1
CCGT	-	1																																																																																																																																																																																																																																																												1
CCTT	-	1																																																																																																																																																																																																																																																												1
CGAA	-	1																																																																																																																																																																																																																																																												1
CGCA	-	1																																																																																																																																																																																																																																																												1
CGCT	-	1																																																																																																																																																																																																																																																												1
CGGC	-	1																																																																																																																																																																																																																																																												1
CGTT	-	2																																																																																																																																																																																																																																																												2
CTAA	-	2																																																																																																																																																																																																																																																												2
CTAT	-	3	1																																																																																																																																																																																																																																																											4
CTCC	-	1																																																																																																																																																																																																																																																												1
CTTC	-						1																																																																																																																																																																																																																																																							1
CTTT	-	2	1																																																																																																																																																																																																																																																											3
GAAA	-	1																																																																																																																																																																																																																																																												1
GAAG	-		1																																																																																																																																																																																																																																																											1
GAAT	-	2																																																																																																																																																																																																																																																												2
GACG	-		1																																																																																																																																																																																																																																																											1
GAGT	-	1																																																																																																																																																																																																																																																												1
GATA	-	7							1																																																																																																																																																																																																																																																					8
GCGA	-	1	1																																																																																																																																																																																																																																																											2
GGAG	-	1																																																																																																																																																																																																																																																												1
GGTC	-		1																																																																																																																																																																																																																																																											1
GTAA	-	1																																																																																																																																																																																																																																																												1
GTAT	-	1	1																																																																																																																																																																																																																																																											2
GTCA	-	1																																																																																																																																																																																																																																																												1
GTGA	-		1																																																																																																																																																																																																																																																											1
GTGC	-	1	1	1																																																																																																																																																																																																																																																										3
GTTA	-	1																																																																																																																																																																																																																																																												1
GTTG	-		1																																																																																																																																																																																																																																																											1
GTTT	-	4	1	1																																																																																																																																																																																																																																																										6
TAAA	-	49	10	4	2	1																																																																																																																																																																																																																																																								66
TAAG	-	1																																																																																																																																																																																																																																																												1
TAAT	-	41	2	2		1																																																																																																																																																																																																																																																								46
TACA	-	1																																																																																																																																																																																																																																																												1
TAGA	-	1					1																																																																																																																																																																																																																																																							2
TAGT	-	1																																																																																																																																																																																																																																																												1
TATC	-	1			1																																																																																																																																																																																																																																																									2
TATG	-	6	3	1	1		1																																																																																																																																																																																																																																																							12
TATT	-	83	15	2																																																																																																																																																																																																																																																										100
TCAA	-	3		1																																																																																																																																																																																																																																																										4
TCAT	-	1	2																																																																																																																																																																																																																																																											3
TCCT	-	1																																																																																																																																																																																																																																																												1
TCGA	-	1																																																																																																																																																																																																																																																												1
TCGT	-	1																																																																																																																																																																																																																																																												1
TCTA	-	3																1		1																																																																																																																																																																																																																																										5
TCTT	-	1														1																																																																																																																																																																																																																																														2
TGAA	-	1																																																																																																																																																																																																																																																												1
TGAG	-	1																																																																																																																																																																																																																																																												1
TGAT	-	1																																																																																																																																																																																																																																																												1
TGCG	-	2	1		1																																																																																																																																																																																																																																																									4
TGGA	-																		1																																																																																																																																																																																																																																											1
TGTT	-	8	1	1																																																																																																																																																																																																																																																										10
TTAA	-	51	14	1	1																																																																																																																																																																																																																																																									67
TTAC	-	1																																																																																																																																																																																																																																																												1
TTAG	-	1																																																																																																																																																																																																																																																												1
TTAT	-	73	17	8	1	1																																																																																																																																																																																																																																																								100
TTCA	-	7																																																																																																																																																																																																																																																												7
TTCT	-	1	1																																																																																																																																																																																																																																																											2
TTGA	-	1																																																																																																																																																																																																																																																												1
TTGT	-	2	2																																																																																																																																																																																																																																																											4
TTTA	-	84	18	1	2	1		1																																																																																																																																																																																																																																																						107
TTTC	-	4	1	2																																																																																																																																																																																																																																																										7
TTTG	-	7		1																																																																																																																																																																																																																																																										8
AAAAC	5																																																																																																																																																																																																																																																													5
AAAAG	8																																																																																																																																																																																																																																																													8
AAAAT	65	5					1																																																																																																																																																																																																																																																							71
AAACA	7	1																																																																																																																																																																																																																																																												8
AAACG	1																																																																																																																																																																																																																																																													1
AAACT	2																																																																																																																																																																																																																																																													2
AAAGA	3																																																																																																																																																																																																																																																													3
AAAGC	1																																																																																																																																																																																																																																																													1
AAAGG	1																																																																																																																																																																																																																																																													1
AAAGT	5																																																																																																																																																																																																																																																													5
AAATA	85	3	1																																																																																																																																																																																																																																																											89
AAATC	2																																																																																																																																																																																																																																																													2
AAATG	11	1		1																																																																																																																																																																																																																																																										13
AAATT	71	7																																																																																																																																																																																																																																																												78
AACAA	5																																																																																																																																																																																																																																																													5
AACCG	3																																																																																																																																																																																																																																																													3
AACCT	1																																																																																																																																																																																																																																																													1
AACGA	1																																																																																																																																																																																																																																																													1
AACTT	1																																																																																																																																																																																																																																																													1
AAGAA	6																																																																																																																																																																																																																																																													6
AAGAG		1																																																																																																																																																																																																																																																												1
AAGAT	2																																																																																																																																																																																																																																																													2
AAGGA	1																																																																																																																																																																																																																																																													1
AAGGG	3																																																																																																																																																																																																																																																													3
AAGTA	2																																																																																																																																																																																																																																																													2
AAGTT	4																																																																																																																																																																																																																																																													4
AATAA	67	4																																																																																																																																																																																																																																																												71
AATAC	2																																																																																																																																																																																																																																																													2
AATAG	5	1																																																																																																																																																																																																																																																												6
AATAT	44	5		2																																																																																																																																																																																																																																																										51
AATCA	4																																																																																																																																																																																																																																																													4
AATCC	2																																																																																																																																																																																																																																																													2
AATCG	1																																																																																																																																																																																																																																																													1
AATCT	1																																																																																																																																																																																																																																																													1
AATGA	4																																																																																																																																																																																																																																																													4
AATGG	6	1			1																																																																																																																																																																																																																																																									8
AATGT	4																																																																																																																																																																																																																																																													4
AATTA	59	9	1																																																																																																																																																																																																																																																											69
AATTC	8	2																																																																																																																																																																																																																																																												10
AATTG	9	1																																																																																																																																																																																																																																																												10
AATTT	74	7			1					1																																																																																																																																																																																																																																																				83
ACAAA	5																																																																																																																																																																																																																																																													5
ACAAT	2	1																																																																																																																																																																																																																																																												3
ACATA	4	1																																																																																																																																																																																																																																																												5
ACATT	5																																																																																																																																																																																																																																																													5
ACCTA	1																																																																																																																																																																																																																																																													1
ACGCA	1																																																																																																																																																																																																																																																													1
ACGTA			1																																																																																																																																																																																																																																																											1
ACTAA	1																																																																																																																																																																																																																																																													1
ACTAT	1																																																																																																																																																																																																																																																													1
ACTCA	1																																																																																																																																																																																																																																																													1
ACTCT	2																																																																																																																																																																																																																																																													2
ACTTA		1																																																																																																																																																																																																																																																												1
ACTTT	13	1																																																																																																																																																																																																																																																												14
AGAAA	4																																																																																																																																																																																																																																																													4
AGAAT	1																																																																																																																																																																																																																																																													1
AGACA	1																																																																																																																																																																																																																																																													1
AGAGA	1																																																																																																																																																																																																																																																													1
AGATA	2																																																																																																																																																																																																																																																													2
AGATT		1																																																																																																																																																																																																																																																												1
AGCTC	2			1																																																																																																																																																																																																																																																										3
AGGTT	1																																																																																																																																																																																																																																																													1
AGTAA	5																																																																																																																																																																																																																																																													5
AGTCG	1																																																																																																																																																																																																																																																													1
AGTGA	1			1																																																																																																																																																																																																																																																										2
AGTTA	1																																																																																																																																																																																																																																																													1
AGTTT	1																																																																																																																																																																																																																																																													1
ATAAA	33	3																																																																																																																																																																																																																																																												36
ATAAC	1																																																																																																																																																																																																																																																													1
ATAAT	33	4	1																																																																																																																																																																																																																																																											38
ATACA	4																																																																																																																																																																																																																																																													4
ATACT	1																																																																																																																																																																																																																																																													1
ATAGA	4																																																																																																																																																																																																																																																													4
ATAGT	3																																																																																																																																																																																																																																																													3
ATATA	46	2	1																																																																																																																																																																																																																																																											49
ATATC	2																																																																																																																																																																																																																																																													2
ATATG	3																																																																																																																																																																																																																																																													3
ATATT	41	13	1																																																																																																																																																																																																																																																											55
ATCAA	4																																																																																																																																																																																																																																																													4
ATCAT	1																																																																																																																																																																																																																																																													1
ATCTA	1																																																																																																																																																																																																																																																													1
ATCTT	4																																																																																																																																																																																																																																																													4
ATGAA	4																																																																																																																																																																																																																																																													4
ATGAC	1																																																																																																																																																																																																																																																													1
ATGCA	1	1																																																																																																																																																																																																																																																												2
ATGTA	6																																																																																																																																																																																																																																																													6
ATGTT	6																																																																																																																																																																																																																																																													6
ATTAA	31	3		1																																																																																																																																																																																																																																																										35
ATTAC	2		1																																																																																																																																																																																																																																																											3
ATTAG	1	1																																																																																																																																																																																																																																																												2
ATTAT	53	5		1	1																																																																																																																																																																																																																																																									60
ATTCA	1																																																																																																																																																																																																																																																													1
ATTCC	4										1																																																																																																																																																																																																																																																			5
ATTCT	2	1																																																																																																																																																																																																																																																												3
ATTGA	3																																																																																																																																																																																																																																																													3
ATTGT	6																																																																																																																																																																																																																																																													6
ATTTA	53	4	2																																																																																																																																																																																																																																																											59
ATTTC	7																																																																																																																																																																																																																																																													7
ATTTG	4	1																																																																																																																																																																																																																																																												5
ATTTT	65	5																																																																																																																																																																																																																																																												70
CAAAA	3																																																																																																																																																																																																																																																													3
CAATA	2																																																																																																																																																																																																																																																													2
CAATC	1																																																																																																																																																																																																																																																													1
CAATG	2																																																																																																																																																																																																																																																													2
CAATT	2																																																																																																																																																																																																																																																													2
CACAC		1																																																																																																																																																																																																																																																												1
CACCC	1																																																																																																																																																																																																																																																													1
CAGTG		1																																																																																																																																																																																																																																																												1
CATAA	2																																																																																																																																																																																																																																																													2
CATAT	2																																																																																																																																																																																																																																																													2
CATTA	2																																																																																																																																																																																																																																																													2
CATTC	1	1																																																																																																																																																																																																																																																												2
CATTT	8																																																																																																																																																																																																																																																													8
CCATA	1																																																																																																																																																																																																																																																													1
CCCCA	1																																																																																																																																																																																																																																																													1
CCCCT	2	1																																																																																																																																																																																																																																																												3
CCCGC	1																																																																																																																																																																																																																																																													1
CCCTC	1																																																																																																																																																																																																																																																													1
CCCTT	4																																																																																																																																																																																																																																																													4
CCGAA	3																																																																																																																																																																																																																																																													3
CCTAA	1																																																																																																																																																																																																																																																													1
CCTCT	1		1																																																																																																																																																																																																																																																											2
CCTTT	6																																																																																																																																																																																																																																																													6
CGGTC	1																																																																																																																																																																																																																																																													1
CTAAA	1																																																																																																																																																																																																																																																													1
CTAAT	2																																																																																																																																																																																																																																																													2
CTATA	1																																																																																																																																																																																																																																																													1
CTCAG	5	5																																																																																																																																																																																																																																																												10
CTCCC	1																																																																																																																																																																																																																																																													1
CTCCT	1																																																																																																																																																																																																																																																													1
CTCTC				1																																																																																																																																																																																																																																																										1
CTCTT	2																																																																																																																																																																																																																																																													2
CTGAG	12	2																																																																																																																																																																																																																																																												14
CTGTT	1																																																																																																																																																																																																																																																													1
CTTAT	1																																																																																																																																																																																																																																																													1
CTTCA			1																																																																																																																																																																																																																																																											1
CTTTA	2																																																																																																																																																																																																																																																													2
CTTTC	1																																																																																																																																																																																																																																																													1
CTTTT	4	1		1																																																																																																																																																																																																																																																										6
GAAAA	6	1																																																																																																																																																																																																																																																												7
GAAAG	1																																																																																																																																																																																																																																																													1
GAAAT	4																																																																																																																																																																																																																																																													4
GAACA	1																																																																																																																																																																																																																																																													1
GAACG	1																																																																																																																																																																																																																																																													1
GAAGA	1																																																																																																																																																																																																																																																													1
GAAGC	1																																																																																																																																																																																																																																																													1
GAAGG	1																																																																																																																																																																																																																																																													1
GAATA	1																																																																																																																																																																																																																																																													1
GAATG	4	1							1																																																																																																																																																																																																																																																					6
GAATT	1																																																																																																																																																																																																																																																													1
GACTC	1																																																																																																																																																																																																																																																													1
GAGAG	1																																																																																																																																																																																																																																																													1
GAGGG	2																																																																																																																																																																																																																																																													2
GATAC	1																																																																																																																																																																																																																																																													1
GATAG	1																																																																																																																																																																																																																																																													1
GATAT	2																																																																																																																																																																																																																																																													2
GATTA	1																																																																																																																																																																																																																																																													1
GATTC	1																																																																																																																																																																																																																																																													1
GATTT	3																																																																																																																																																																																																																																																													3
GCAAC	1																																																																																																																																																																																																																																																													1
GCCTT	1																																																																																																																																																																																																																																																													1
GCGAT	1																																																																																																																																																																																																																																																													1
GCGCG	1																																																																																																																																																																																																																																																													1
GCTCA	2																																																																																																																																																																																																																																																													2
GCTGA	1																																																																																																																																																																																																																																																													1
GGAAT	2	3		1	1	2	1	1																																																																																																																																																																																																																																																						11
GGAGA	2																																																																																																																																																																																																																																																													2
GGAGT	1																																																																																																																																																																																																																																																													1
GGGTG	1																																																																																																																																																																																																																																																													1
GGTGG	1																																																																																																																																																																																																																																																													1
GGTTG	1																																																																																																																																																																																																																																																													1
GTAAA	1	1																																																																																																																																																																																																																																																												2
GTAGA	1																																																																																																																																																																																																																																																													1
GTATA	3																																																																																																																																																																																																																																																													3
GTATG	1																																																																																																																																																																																																																																																													1
GTATT	3	1																																																																																																																																																																																																																																																												4
GTCAC	1																																																																																																																																																																																																																																																													1
GTCGC	1																																																																																																																																																																																																																																																													1
GTGAA		1																																																																																																																																																																																																																																																												1
GTTAA	1																																																																																																																																																																																																																																																													1
GTTAT	1																																																																																																																																																																																																																																																													1
GTTCC	1																																																																																																																																																																																																																																																													1
GTTCT		1																																																																																																																																																																																																																																																												1
GTTTA	1																																																																																																																																																																																																																																																													1
GTTTT	8	2																																																																																																																																																																																																																																																												10
TAAAA	51	2																																																																																																																																																																																																																																																												53
TAAAG	11			1																																																																																																																																																																																																																																																										12
TAAAT	47	4																																																																																																																																																																																																																																																												51
TAACA	5																																																																																																																																																																																																																																																													5
TAACC	1																																																																																																																																																																																																																																																													1
TAACG	1																																																																																																																																																																																																																																																													1
TAACT	1		1																																																																																																																																																																																																																																																											2
TAAGT	1																																																																																																																																																																																																																																																													1
TAATA	43	2	2																																																																																																																																																																																																																																																											47
TAATG	4																																																																																																																																																																																																																																																													4
TAATT	51																																																																																																																																																																																																																																																													51
TACAA	3	1																																																																																																																																																																																																																																																												4
TACAG	4	1																																																																																																																																																																																																																																																												5
TACAT	1																																																																																																																																																																																																																																																													1
TACTA	1																																																																																																																																																																																																																																																													1
TAGAT	2																																																																																																																																																																																																																																																													2
TAGTA	1																																																																																																																																																																																																																																																													1
TAGTC	1																																																																																																																																																																																																																																																													1
TAGTT	1																																																																																																																																																																																																																																																													1
TATAA	30	4																																																																																																																																																																																																																																																												34
TATAC	4																																																																																																																																																																																																																																																													4
TATAG	2																																																																																																																																																																																																																																																													2
TATAT	48		1																																																																																																																																																																																																																																																											49
TATCA		1																																																																																																																																																																																																																																																												1
TATCG	1																																																																																																																																																																																																																																																													1
TATCT	2																																																																																																																																																																																																																																																													2
TATGA	1																																																																																																																																																																																																																																																													1
TATGG		1																																																																																																																																																																																																																																																												1
TATGT	6																																																																																																																																																																																																																																																													6
TATTA	53	5	2																																																																																																																																																																																																																																																											60
TATTC	2																																																																																																																																																																																																																																																													2
TATTG	5																																																																																																																																																																																																																																																													5
TATTT	53	2																																																																																																																																																																																																																																																												55
TCAAA	3																																																																																																																																																																																																																																																													3
TCAGC	1																																																																																																																																																																																																																																																													1
TCATG	1																																																																																																																																																																																																																																																													1
TCATT	3																																																																																																																																																																																																																																																													3
TCCAC		1																																																																																																																																																																																																																																																												1
TCCAT		2																																																																																																																																																																																																																																																												2
TCCTC	2																																																																																																																																																																																																																																																													2
TCGGT	6																																																																																																																																																																																																																																																													6
TCTAA	1																																																																																																																																																																																																																																																													1
TCTAC	1																																																																																																																																																																																																																																																													1
TCTTA		2																																																																																																																																																																																																																																																												2
TCTTG	1																																																																																																																																																																																																																																																													1
TGAAA	10																																																																																																																																																																																																																																																													10
TGAAT	4																																																																																																																																																																																																																																																													4
TGACG			1																																																																																																																																																																																																																																																											1
TGACT	1																																																																																																																																																																																																																																																													1
TGAGC	1																																																																																																																																																																																																																																																													1
TGATG	1																																																																																																																																																																																																																																																													1
TGATT	1																																																																																																																																																																																																																																																													1
TGCAA	1																																																																																																																																																																																																																																																													1
TGGAA		1	1																																																																																																																																																																																																																																																											2
TGGTA	1																																																																																																																																																																																																																																																													1
TGGTT	1																																																																																																																																																																																																																																																													1
TGTAA	2																																																																																																																																																																																																																																																													2
TGTAT	2																																																																																																																																																																																																																																																													2
TGTCT	1																																																																																																																																																																																																																																																													1
TGTGA	1																																																																																																																																																																																																																																																													1
TGTGG	1	1																																																																																																																																																																																																																																																												2
TGTGT	3																																																																																																																																																																																																																																																													3
TGTTA	1																																																																																																																																																																																																																																																													1
TGTTT	6																																																																																																																																																																																																																																																													6
TTAAA	60	6																																																																																																																																																																																																																																																												66
TTAAG	1																																																																																																																																																																																																																																																													1
TTAAT	53	5	1	1	1	1			1																																																																																																																																																																																																																																																					63
TTACA	5																																																																																																																																																																																																																																																													5
TTACG	1																																																																																																																																																																																																																																																													1
TTACT	1																																																																																																																																																																																																																																																													1
TTAGG	2																																																																																																																																																																																																																																																													2
TTAGT	1	1																																																																																																																																																																																																																																																												2
TTATA	33	2																																																																																																																																																																																																																																																												35
TTATC	2																																																																																																																																																																																																																																																													2
TTATG	4																																																																																																																																																																																																																																																													4
TTATT	64	8	1																																																																																																																																																																																																																																																											73
TTCAA	4																																																																																																																																																																																																																																																													4
TTCAC	1																																																																																																																																																																																																																																																													1
TTCAT	8	1																																																																																																																																																																																																																																																												9
TTCCA	2		1																																																																																																																																																																																																																																																											3
TTCCT	1																																																																																																																																																																																																																																																													1
TTCGA	2																																																																																																																																																																																																																																																													2
TTCGG	5																																																																																																																																																																																																																																																													5
TTCTA	1	1																																																																																																																																																																																																																																																												2
TTCTC	1																																																																																																																																																																																																																																																													1
TTCTT	3	1																																																																																																																																																																																																																																																												4
TTGAA	1	1																																																																																																																																																																																																																																																												2
TTGAT	8	1																																																																																																																																																																																																																																																												9
TTGCG	1																																																																																																																																																																																																																																																													1
TTGTA	3																																																																																																																																																																																																																																																													3
TTGTT	5																																																																																																																																																																																																																																																													5
TTTAA	59	7																																																																																																																																																																																																																																																												66
TTTAC	4																																																																																																																																																																																																																																																													4
TTTAG	1																																																																																																																																																																																																																																																													1
TTTAT	42	3																																																																																																																																																																																																																																																												45
TTTCA	12																																																																																																																																																																																																																																																													12
TTTCC	2																																																																																																																																																																																																																																																													2
TTTCG	1																																																																																																																																																																																																																																																													1
TTTCT	9	1																																																																																																																																																																																																																																																												10
TTTGA	2																																																																																																																																																																																																																																																													2
TTTGT	5																																																																																																																																																																																																																																																													5
TTTTA	56	5																																																																																																																																																																																																																																																												61
TTTTC	12	1																																																																																																																																																																																																																																																												13
TTTTG	10	2																																																																																																																																																																																																																																																												12
AAAAAC	2																																																																																																																																																																																																																																																													2
AAAAAG	1																																																																																																																																																																																																																																																													1
AAAAAT	6																																																																																																																																																																																																																																																													6
AAAACA	1																																																																																																																																																																																																																																																													1
AAAAGA	1																																																																																																																																																																																																																																																													1
AAAATA	4																																																																																																																																																																																																																																																													4
AAAATT	5	1																																																																																																																																																																																																																																																												6
AAACAA	1																																																																																																																																																																																																																																																													1
AAACGC	1																																																																																																																																																																																																																																																													1
AAAGTA	1																																																																																																																																																																																																																																																													1
AAATAA	1																																																																																																																																																																																																																																																													1
AAATAG	2																																																																																																																																																																																																																																																													2
AAATAT	2																																																																																																																																																																																																																																																													2
AAATCG	1																																																																																																																																																																																																																																																													1
AAATGA	1																																																																																																																																																																																																																																																													1
AAATGT	1																																																																																																																																																																																																																																																													1
AAATTA	5																																																																																																																																																																																																																																																													5
AAATTC	2																																																																																																																																																																																																																																																													2
AAATTT	12																																																																																																																																																																																																																																																													12
AACAAT	4																																																																																																																																																																																																																																																													4
AACATA	1																																																																																																																																																																																																																																																													1
AACCGG	1																																																																																																																																																																																																																																																													1
AAGAAA	2																																																																																																																																																																																																																																																													2
AAGATA	2																																																																																																																																																																																																																																																													2
AAGTAT	1																																																																																																																																																																																																																																																													1
AAGTTC	1																																																																																																																																																																																																																																																													1
AATAAA	4																																																																																																																																																																																																																																																													4
AATAAC	1	3																																																																																																																																																																																																																																																												4
AATAAG	1																																																																																																																																																																																																																																																													1
AATATA	2																																																																																																																																																																																																																																																													2
AATATG		1																																																																																																																																																																																																																																																												1
AATATT	3	1																																																																																																																																																																																																																																																												4
AATCAT	1																																																																																																																																																																																																																																																													1
AATGAA	2																																																																																																																																																																																																																																																													2
AATGAC	2																																																																																																																																																																																																																																																													2
AATGAT	5																																																																																																																																																																																																																																																													5
AATGGC	1																																																																																																																																																																																																																																																													1
AATGTT	1																																																																																																																																																																																																																																																													1
AATTAA	1																																																																																																																																																																																																																																																													1
AATTAT	4																																																																																																																																																																																																																																																													4
AATTCT	3																																																																																																																																																																																																																																																													3
AATTGA	1																																																																																																																																																																																																																																																													1
AATTTA	4																																																																																																																																																																																																																																																													4
AATTTC	1																																																																																																																																																																																																																																																													1
AATTTG	1																																																																																																																																																																																																																																																													1
AATTTT	7																																																																																																																																																																																																																																																													7
ACACTT	1																																																																																																																																																																																																																																																													1
ACATAA	1																																																																																																																																																																																																																																																													1
ACATAT	1																																																																																																																																																																																																																																																													1
ACCATT	1																																																																																																																																																																																																																																																													1
ACCTAT	1																																																																																																																																																																																																																																																													1
ACGAGG		1																																																																																																																																																																																																																																																												1
ACTATT	1																																																																																																																																																																																																																																																													1
AGAATT	1	1																																																																																																																																																																																																																																																												2
AGAGAC	1																																																																																																																																																																																																																																																													1
AGATGA				1																																																																																																																																																																																																																																																										1
AGCAGT			1																																																																																																																																																																																																																																																											1
AGTATA	1																																																																																																																																																																																																																																																													1
AGTATG		1																																																																																																																																																																																																																																																												1
AGTGTG	1																																																																																																																																																																																																																																																													1
AGTTAG	1																																																																																																																																																																																																																																																													1
ATAAAA	1																																																																																																																																																																																																																																																													1
ATAAAC	1																																																																																																																																																																																																																																																													1
ATAAAG	2																																																																																																																																																																																																																																																													2
ATAAAT	8	1																																																																																																																																																																																																																																																												9
ATAATC	1																																																																																																																																																																																																																																																													1
ATAATG	2																																																																																																																																																																																																																																																													2
ATAATT	6																																																																																																																																																																																																																																																													6
ATAGTA	2																																																																																																																																																																																																																																																													2
ATAGTC	1																																																																																																																																																																																																																																																													1
ATATAA	1																																																																																																																																																																																																																																																													1
ATATGT	1																																																																																																																																																																																																																																																													1
ATATTA	4																																																																																																																																																																																																																																																													4
ATATTT	6																																																																																																																																																																																																																																																													6
ATCATA	1																																																																																																																																																																																																																																																													1
ATCATT	4	1																																																																																																																																																																																																																																																												5
ATCGAT	1																																																																																																																																																																																																																																																													1
ATCTTC	1																																																																																																																																																																																																																																																													1
ATGAAA	1																																																																																																																																																																																																																																																													1
ATGAAC	1																																																																																																																																																																																																																																																													1
ATGAAT	1																																																																																																																																																																																																																																																													1
ATGATA	1																																																																																																																																																																																																																																																													1
ATGTTT	2																																																																																																																																																																																																																																																													2
ATTAAA	3																																																																																																																																																																																																																																																													3
ATTAAG	1																																																																																																																																																																																																																																																													1
ATTAAT	7																																																																																																																																																																																																																																																													7
ATTACA	1																																																																																																																																																																																																																																																													1
ATTACT	1																																																																																																																																																																																																																																																													1
ATTAGA	2																																																																																																																																																																																																																																																													2
ATTATA	5	1																																																																																																																																																																																																																																																												6
ATTATC	3																																																																																																																																																																																																																																																													3
ATTCTC	1																																																																																																																																																																																																																																																													1
ATTGAT	1																																																																																																																																																																																																																																																													1
ATTGGA	2																																																																																																																																																																																																																																																													2
ATTGTG	1																																																																																																																																																																																																																																																													1
ATTGTT	4	1																																																																																																																																																																																																																																																												5
ATTTAA	2																																																																																																																																																																																																																																																													2
ATTTAC			1																																																																																																																																																																																																																																																											1
ATTTAT	8																																																																																																																																																																																																																																																													8
ATTTCA	1																																																																																																																																																																																																																																																													1
ATTTGA	1																																																																																																																																																																																																																																																													1
ATTTGC	1																																																																																																																																																																																																																																																													1
ATTTGT	1	1																																																																																																																																																																																																																																																												2
ATTTTA	7																																																																																																																																																																																																																																																													7
ATTTTC	2																																																																																																																																																																																																																																																													2
ATTTTG	2																																																																																																																																																																																																																																																													2
ATTTTT	10																																																																																																																																																																																																																																																													10
CAAAAA	3																																																																																																																																																																																																																																																													3
CAAAGT	1																																																																																																																																																																																																																																																													1
CAAATT	2																																																																																																																																																																																																																																																													2
CAACAG		1																																																																																																																																																																																																																																																												1
CAAGAG	1																																																																																																																																																																																																																																																													1
CAATAC	1																																																																																																																																																																																																																																																													1
CAATGA		1																																																																																																																																																																																																																																																												1
CAATTT	1																																																																																																																																																																																																																																																													1
CACAAC	1																																																																																																																																																																																																																																																													1
CACACG									1																																																																																																																																																																																																																																																					1
CACGCA	3																																																																																																																																																																																																																																																													3
CACTAT	1																																																																																																																																																																																																																																																													1
CAGAGA	1																																																																																																																																																																																																																																																													1
CAGCAA	1																																																																																																																																																																																																																																																													1
CAGTTT	1																																																																																																																																																																																																																																																													1
CATAAC		1																																																																																																																																																																																																																																																												1
CATAAT	1													1																																																																																																																																																																																																																																																2
CATTAT	1																																																																																																																																																																																																																																																													1
CATTTA	1																																																																																																																																																																																																																																																													1
CCAATA	1				1																																																																																																																																																																																																																																																									2
CCATCA		1																																																																																																																																																																																																																																																												1
CCCCCA	1																																																																																																																																																																																																																																																													1
CCGCCA	1																																																																																																																																																																																																																																																													1
CGATAT	1																																																																																																																																																																																																																																																													1
CGCACA	1																																																																																																																																																																																																																																																													1
CGTGTG				1																																																																																																																																																																																																																																																										1
CTAGTT	1																																																																																																																																																																																																																																																													1
CTATCT	1																																																																																																																																																																																																																																																													1
CTCCCT		1																																																																																																																																																																																																																																																												1
CTGCCC	1																																																																																																																																																																																																																																																													1
CTTAGA	1																																																																																																																																																																																																																																																													1
GAATAA	1																																																																																																																																																																																																																																																													1
GAATAT	1																																																																																																																																																																																																																																																													1
GAATCA	1																																																																																																																																																																																																																																																													1
GAATTA	1																																																																																																																																																																																																																																																													1
GAATTT	1																																																																																																																																																																																																																																																													1
GAGGAA	1																																																																																																																																																																																																																																																													1
GATAAT	2																																																																																																																																																																																																																																																													2
GATGCT	1																																																																																																																																																																																																																																																													1
GATTAA	1																																																																																																																																																																																																																																																													1
GCAGAG	1																																																																																																																																																																																																																																																													1
GCAGTT	1																																																																																																																																																																																																																																																													1
GCCGTG	1																																																																																																																																																																																																																																																													1
GGATCG		1																																																																																																																																																																																																																																																												1
GGGAGG	1																																																																																																																																																																																																																																																													1
GGTAAC	1																																																																																																																																																																																																																																																													1
GTAGTT	1																																																																																																																																																																																																																																																													1
GTATAT	2																																																																																																																																																																																																																																																													2
GTATTA	1																																																																																																																																																																																																																																																													1
GTCAAA	1																																																																																																																																																																																																																																																													1
GTCAAT	1																																																																																																																																																																																																																																																													1
GTCCAG	1																																																																																																																																																																																																																																																													1
GTGTGC					1			1																																																																																																																																																																																																																																																						2
GTTATT	1																																																																																																																																																																																																																																																													1
GTTCGC	1																																																																																																																																																																																																																																																													1
GTTGAT	1																																																																																																																																																																																																																																																													1
GTTTAT	1																																																																																																																																																																																																																																																													1
GTTTTT		1																																																																																																																																																																																																																																																												1
TAAAAA	2																																																																																																																																																																																																																																																													2
TAAAAT	6																																																																																																																																																																																																																																																													6
TAAACA	1																																																																																																																																																																																																																																																													1
TAAAGA	1																																																																																																																																																																																																																																																													1
TAAATA	4																																																																																																																																																																																																																																																													4
TAAATG	2																																																																																																																																																																																																																																																													2
TAAATT	7																																																																																																																																																																																																																																																													7
TAACAA	2																																																																																																																																																																																																																																																													2
TAAGAA	1																																																																																																																																																																																																																																																													1
TAAGAT	1																																																																																																																																																																																																																																																													1
TAATAG	1																																																																																																																																																																																																																																																													1
TAATAT	4																																																																																																																																																																																																																																																													4
TAATGA	1																																																																																																																																																																																																																																																													1
TAATGT	1																																																																																																																																																																																																																																																													1
TAATTA	5																																																																																																																																																																																																																																																													5
TAATTT	2																																																																																																																																																																																																																																																													2
TACAAA	1																																																																																																																																																																																																																																																													1
TACACA	1																																																																																																																																																																																																																																																													1
TACATA	1																																																																																																																																																																																																																																																													1
TAGTAA	2																																																																																																																																																																																																																																																													2
TATAAA	6																																																																																																																																																																																																																																																													6
TATAAT	4																																																																																																																																																																																																																																																													4
TATATC	1																																																																																																																																																																																																																																																													1
TATATG	1																																																																																																																																																																																																																																																													1
TATATT	3	1																																																																																																																																																																																																																																																												4
TATCAT	2																																																																																																																																																																																																																																																													2
TATGAT	1																																																																																																																																																																																																																																																													1
TATGTA	1																																																																																																																																																																																																																																																													1
TATTAA	1																																																																																																																																																																																																																																																													1
TATTCT	2																																																																																																																																																																																																																																																													2
TATTGA	1																																																																																																																																																																																																																																																													1
TATTGT	2																																																																																																																																																																																																																																																													2
TATTTA	13																																																																																																																																																																																																																																																													13
TATTTT	7		1																																																																																																																																																																																																																																																											8
TCAAAA	1																																																																																																																																																																																																																																																													1
TCAAAT	3																																																																																																																																																																																																																																																													3
TCAATA	1					1																																																																																																																																																																																																																																																								2
TCATGG	1																																																																																																																																																																																																																																																													1
TCATTA	1																																																																																																																																																																																																																																																													1
TCATTT	1																																																																																																																																																																																																																																																													1
TCTGTC	1																																																																																																																																																																																																																																																													1
TCTTCA		1																																																																																																																																																																																																																																																												1
TCTTTC	1																																																																																																																																																																																																																																																													1
TCTTTT	1																																																																																																																																																																																																																																																													1
TGAAAA	2																																																																																																																																																																																																																																																													2
TGAAGA	1																																																																																																																																																																																																																																																													1
TGAAGT	1																																																																																																																																																																																																																																																													1
TGAATT	3																																																																																																																																																																																																																																																													3
TGACAG	1																																																																																																																																																																																																																																																													1
TGATAA	1	1																																																																																																																																																																																																																																																												2
TGATAG	1																																																																																																																																																																																																																																																													1
TGATGG	1																																																																																																																																																																																																																																																													1
TGATGT	1																																																																																																																																																																																																																																																													1
TGATTG	1																																																																																																																																																																																																																																																													1
TGATTT	1																																																																																																																																																																																																																																																													1
TGTAAG	1																																																																																																																																																																																																																																																													1
TGTAAT	1																																																																																																																																																																																																																																																													1
TGTACA	1																																																																																																																																																																																																																																																													1
TGTATA	2																																																																																																																																																																																																																																																													2
TGTTAT	1																																																																																																																																																																																																																																																													1
TGTTTA	2																																																																																																																																																																																																																																																													2
TGTTTG	1																																																																																																																																																																																																																																																													1
TTAAAA	5																																																																																																																																																																																																																																																													5
TTAAAG	1																																																																																																																																																																																																																																																													1
TTAAAT	4																																																																																																																																																																																																																																																													4
TTAACA	1																																																																																																																																																																																																																																																													1
TTAATA	3																																																																																																																																																																																																																																																													3
TTAATT	1	1																																																																																																																																																																																																																																																												2
TTACAA	1																																																																																																																																																																																																																																																													1
TTAGAG	1																																																																																																																																																																																																																																																													1
TTATAA	8																																																																																																																																																																																																																																																													8
TTATAT	3	1																																																																																																																																																																																																																																																												4
TTATCA	1																																																																																																																																																																																																																																																													1
TTATCT	1																																																																																																																																																																																																																																																													1
TTATGA	1																																																																																																																																																																																																																																																													1
TTATTC	2																																																																																																																																																																																																																																																													2
TTATTG	2																																																																																																																																																																																																																																																													2
TTATTT	6																																																																																																																																																																																																																																																													6
TTCTGG	1																																																																																																																																																																																																																																																													1
TTCTGT	1																																																																																																																																																																																																																																																													1
TTCTTA	2																																																																																																																																																																																																																																																													2
TTGAAT	1																																																																																																																																																																																																																																																													1
TTGATG	1																																																																																																																																																																																																																																																													1
TTGATT	2																																																																																																																																																																																																																																																													2
TTGCTA	1																																																																																																																																																																																																																																																													1
TTGTTT	1																																																																																																																																																																																																																																																													1
TTTAAA	6																																																																																																																																																																																																																																																													6
TTTAAT	7																																																																																																																																																																																																																																																													7
TTTAGT	2																																																																																																																																																																																																																																																													2
TTTATA	4																																																																																																																																																																																																																																																													4
TTTATC	1																																																																																																																																																																																																																																																													1
TTTATG	1																																																																																																																																																																																																																																																													1
TTTATT	4																																																																																																																																																																																																																																																													4
TTTCAG	1																																																																																																																																																																																																																																																													1
TTTCTT	1																																																																																																																																																																																																																																																													1
TTTGAA	1																																																																																																																																																																																																																																																													1
TTTGAT		1																																																																																																																																																																																																																																																												1
TTTGTA	1																																																																																																																																																																																																																																																													1
TTTGTT	1																																																																																																																																																																																																																																																													1
TTTTAA	7																																																																																																																																																																																																																																																													7
TTTTAC	1																																																																																																																																																																																																																																																													1
TTTTAT	4																																																																																																																																																																																																																																																													4
TTTTTA	5																																																																																																																																																																																																																																																													5
TTTTTC	4																																																																																																																																																																																																																																																													4

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	189	190	191	192	193	194	195	196	197	198	199	200	201	202	203	204	205	206	207	208	209	210	211	212	213	214	215	216	217	218	219	220	221	222	223	224	225	226	227	228	229	230	231	232	233	234	235	236	237	238	239	240	241	242	243	244	245	246	247	248	249	250	251	252	253	254	255	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	52	41	29	19	32	15	14	9	7	9	7	8	3	1	4	2	1	1	3	1			2		2	1	2			1		1	3	3		1	2				1	2	1	1	2		1			1						2	1				1					1		1		1		1				1																					1																																									1																																																					1																																														297
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	22	17	13	6	12	9	13	5	5	4	5	4	3	1	6	5	3	2	4			2	2	3	2		4	2		2	2	1		2	1		1			1	1	3						1		1			2	1	1						1				1		1	1	2			1					2	1			1												1								2						1																																																																	1																																																																1	191
AC/GT	-	-	-	144	56	52	32	13	18	10	6	3	3		4		1		1	3	1		1					1	1																																																																																																																																																																																																																																	350
AG/CT	-	-	-	190	109	81	44	21	13	4	14	4	3	1	4		1	1	1	1	2	1	1	1								1																																																																																																																																																																																																																														498
AT/AT	-	-	-	1117	639	377	235	151	86	55	42	36	20	12	8	6	5	4	2	2	2																																																																																																																																																																																																																																									2799
CG/CG	-	-	-	52	20	4	1	1																																																																																																																																																																																																																																																						78
AAC/GTT	-	-	66	25	10	6	4	1	2			1	1		1																																																																																																																																																																																																																																															117
AAG/CTT	-	-	52	16	12	3	4	1	2	1				1																																																																																																																																																																																																																																																92
AAT/ATT	-	-	843	291	129	58	39	19	9	12	6	7	3		3				1	1								1				1																																																																																																																																																																																																																														1423
ACC/GGT	-	-	5	2				1																																																																																																																																																																																																																																																						8
ACG/CGT	-	-	11	4	3	1	1		1		1																																																																																																																																																																																																																																																			22
ACT/AGT	-	-	7	4	1	1	1																																																																																																																																																																																																																																																							14
AGC/CTG	-	-	10	3	1			3	1				1																																																																																																																																																																																																																																																	19
AGG/CCT	-	-	13	5	3	1	3			2																																																																																																																																																																																																																																																				27
ATC/ATG	-	-	31	8	6	1	1	1			1							1							1																																																																																																																																																																																																																																					51
CCG/CGG	-	-	5	3																																																																																																																																																																																																																																																										8
AAAC/GTTT	-	37	6	3	1																																																																																																																																																																																																																																																									47
AAAG/CTTT	-	12	3	3												1																																																																																																																																																																																																																																														19
AAAT/ATTT	-	561	119	29	7	5		2	2																																																																																																																																																																																																																																																					725
AACC/GGTT	-		1																																																																																																																																																																																																																																																											1
AACG/CGTT	-	5																																																																																																																																																																																																																																																												5
AACT/AGTT	-	6																																																																																																																																																																																																																																																												6
AAGG/CCTT	-	2	1		1		1																																																																																																																																																																																																																																																							5
AAGT/ACTT	-	6		1																																																																																																																																																																																																																																																										7
AATC/ATTG	-	14	2	1																																																																																																																																																																																																																																																										17
AATG/ATTC	-	22	4																																																																																																																																																																																																																																																											26
AATT/AATT	-	182	41	7	2	1																																																																																																																																																																																																																																																								233
ACAG/CTGT	-	1																																																																																																																																																																																																																																																												1
ACAT/ATGT	-	18	6	1	1		1																																																																																																																																																																																																																																																							27
ACCG/CGGT	-		1																																																																																																																																																																																																																																																											1
ACCT/AGGT	-	1																																																																																																																																																																																																																																																												1
ACGC/CGTG	-	6	2	1	1																			1																																																																																																																																																																																																																																						11
ACGG/CCGT	-	2	1																																																																																																																																																																																																																																																											3
ACTC/AGTG	-	2	1																																																																																																																																																																																																																																																											3
ACTG/AGTC	-	2	1																																																																																																																																																																																																																																																											3
AGAT/ATCT	-	28	8	5	2	2	5	1	1		1		1			1		2		1		1																																																																																																																																																																																																																																								59
AGCC/CTGG	-		1																																																																																																																																																																																																																																																											1
AGCG/CGCT	-	2	1																																																																																																																																																																																																																																																											3
AGGG/CCCT	-	2	1																																																																																																																																																																																																																																																											3
ATCC/ATGG	-	3	1		1														1																																																																																																																																																																																																																																											6
ATCG/ATCG	-	1																																																																																																																																																																																																																																																												1
ATGC/ATGC	-	1																																																																																																																																																																																																																																																												1
CCGG/CCGG	-	1																																																																																																																																																																																																																																																												1
AAAAC/GTTTT	59	5																																																																																																																																																																																																																																																												64
AAAAG/CTTTT	55	5		1																																																																																																																																																																																																																																																										61
AAAAT/ATTTT	581	40	2				1																																																																																																																																																																																																																																																							624
AAACC/GGTTT	1																																																																																																																																																																																																																																																													1
AAACG/CGTTT	3																																																																																																																																																																																																																																																													3
AAACT/AGTTT	9	1																																																																																																																																																																																																																																																												10
AAAGC/CTTTG	1																																																																																																																																																																																																																																																													1
AAAGG/CCTTT	13																																																																																																																																																																																																																																																													13
AAAGT/ACTTT	44	2		1																																																																																																																																																																																																																																																										47
AAATC/ATTTG	31	2																																																																																																																																																																																																																																																												33
AAATG/ATTTC	71	2		1																																																																																																																																																																																																																																																										74
AAATT/AATTT	558	52	4	2	2	1			1	1																																																																																																																																																																																																																																																				621
AACAC/GTGTT	3																																																																																																																																																																																																																																																													3
AACAG/CTGTT	2	1																																																																																																																																																																																																																																																												3
AACAT/ATGTT	30	1																																																																																																																																																																																																																																																												31
AACCC/GGGTT	1																																																																																																																																																																																																																																																													1
AACCG/CGGTT	17																																																																																																																																																																																																																																																													17
AACCT/AGGTT	7																																																																																																																																																																																																																																																													7
AACGC/CGTTG	3																																																																																																																																																																																																																																																													3
AACGG/CCGTT	2																																																																																																																																																																																																																																																													2
AACGT/ACGTT	2		1																																																																																																																																																																																																																																																											3
AACTC/AGTTG	1																																																																																																																																																																																																																																																													1
AACTT/AAGTT	10	1	1																																																																																																																																																																																																																																																											12
AAGAC/CTTGT	3																																																																																																																																																																																																																																																													3
AAGAG/CTCTT	5	1																																																																																																																																																																																																																																																												6
AAGAT/ATCTT	13	2																																																																																																																																																																																																																																																												15
AAGCG/CGCTT	1																																																																																																																																																																																																																																																													1
AAGGC/CCTTG	1																																																																																																																																																																																																																																																													1
AAGGG/CCCTT	8																																																																																																																																																																																																																																																													8
AAGTC/ACTTG	1																																																																																																																																																																																																																																																													1
AAGTG/ACTTC	2	1	1	1																																																																																																																																																																																																																																																										5
AATAC/ATTGT	32	3																																																																																																																																																																																																																																																												35
AATAG/ATTCT	16	3																																																																																																																																																																																																																																																												19
AATAT/ATATT	424	42	8	3	1																																																																																																																																																																																																																																																									478
AATCC/ATTGG	3																																																																																																																																																																																																																																																													3
AATCG/ATTCG	4																																																																																																																																																																																																																																																													4
AATCT/AGATT	9	2																																																																																																																																																																																																																																																												11
AATGC/ATTGC	4	1																																																																																																																																																																																																																																																												5
AATGG/ATTCC	19	9	2	1	2	2	1	1	1		1																																																																																																																																																																																																																																																			39
AATGT/ACATT	31		1																																																																																																																																																																																																																																																											32
AATTC/AATTG	33	4																																																																																																																																																																																																																																																												37
ACACC/GGTGT	1	2																																																																																																																																																																																																																																																												3
ACAGT/ACTGT	4	1																																																																																																																																																																																																																																																												5
ACATC/ATGTG	2																																																																																																																																																																																																																																																													2
ACATG/ATGTC	2																																																																																																																																																																																																																																																													2
ACCAT/ATGGT	3	1																																																																																																																																																																																																																																																												4
ACCCC/GGGGT	4																																																																																																																																																																																																																																																													4
ACCGG/CCGGT	1																																																																																																																																																																																																																																																													1
ACGAT/ATCGT	2																																																																																																																																																																																																																																																													2
ACGCG/CGCGT	1																																																																																																																																																																																																																																																													1
ACGTC/ACGTG	1		1																																																																																																																																																																																																																																																											2
ACTAG/AGTCT	1																																																																																																																																																																																																																																																													1
ACTAT/AGTAT	17																																																																																																																																																																																																																																																													17
ACTCC/AGTGG	1	1																																																																																																																																																																																																																																																												2
ACTCG/AGTCG	2																																																																																																																																																																																																																																																													2
ACTCT/AGAGT	4																																																																																																																																																																																																																																																													4
ACTGC/AGTGC		1																																																																																																																																																																																																																																																												1
AGAGG/CCTCT	7		1	1																																																																																																																																																																																																																																																										9
AGCTC/AGCTG	24	7		1																																																																																																																																																																																																																																																										32
AGGAT/ATCCT	1																																																																																																																																																																																																																																																													1
AGGGG/CCCCT	6	1																																																																																																																																																																																																																																																												7
ATATC/ATATG	11	1																																																																																																																																																																																																																																																												12
ATCGC/ATGCG	1																																																																																																																																																																																																																																																													1
CCCCG/CGGGG	1																																																																																																																																																																																																																																																													1
CCGCG/CGCGG	1																																																																																																																																																																																																																																																													1
AAAAAC/GTTTTT	9	1																																																																																																																																																																																																																																																												10
AAAAAG/CTTTTT	10																																																																																																																																																																																																																																																													10
AAAAAT/ATTTTT	54		1																																																																																																																																																																																																																																																											55
AAAACT/AGTTTT	2																																																																																																																																																																																																																																																													2
AAAAGT/ACTTTT	2																																																																																																																																																																																																																																																													2
AAAATC/ATTTTG	6	1																																																																																																																																																																																																																																																												7
AAAATG/ATTTTC	9																																																																																																																																																																																																																																																													9
AAAATT/AATTTT	56	2																																																																																																																																																																																																																																																												58
AAACAC/GTGTTT	1																																																																																																																																																																																																																																																													1
AAACAG/CTGTTT	1																																																																																																																																																																																																																																																													1
AAACAT/ATGTTT	10																																																																																																																																																																																																																																																													10
AAACGC/CGTTTG	1																																																																																																																																																																																																																																																													1
AAACTG/AGTTTC	2																																																																																																																																																																																																																																																													2
AAAGAG/CTCTTT	1																																																																																																																																																																																																																																																													1
AAAGAT/ATCTTT	7																																																																																																																																																																																																																																																													7
AAAGTC/ACTTTG	2																																																																																																																																																																																																																																																													2
AAAGTT/AACTTT	1																																																																																																																																																																																																																																																													1
AAATAC/ATTTGT	3	1																																																																																																																																																																																																																																																												4
AAATAG/ATTTCT	2																																																																																																																																																																																																																																																													2
AAATAT/ATATTT	60	3																																																																																																																																																																																																																																																												63
AAATCG/ATTTCG	1																																																																																																																																																																																																																																																													1
AAATGC/ATTTGC	1																																																																																																																																																																																																																																																													1
AAATGT/ACATTT	4		1																																																																																																																																																																																																																																																											5
AAATTC/AATTTG	15																																																																																																																																																																																																																																																													15
AAATTG/AATTTC	4																																																																																																																																																																																																																																																													4
AAATTT/AAATTT	35																																																																																																																																																																																																																																																													35
AACAAT/ATTGTT	17	4																																																																																																																																																																																																																																																												21
AACAGC/CTGTTG	1	1																																																																																																																																																																																																																																																												2
AACATC/ATGTTG	3																																																																																																																																																																																																																																																													3
AACATG/ATGTTC	1																																																																																																																																																																																																																																																													1
AACATT/AATGTT	3																																																																																																																																																																																																																																																													3
AACCAC/GGTTGT	1																																																																																																																																																																																																																																																													1
AACCAG/CTGGTT	1																																																																																																																																																																																																																																																													1
AACCAT/ATGGTT		1																																																																																																																																																																																																																																																												1
AACCGG/CCGGTT	1																																																																																																																																																																																																																																																													1
AACGCG/CGCGTT	1																																																																																																																																																																																																																																																													1
AACGGT/ACCGTT	1																																																																																																																																																																																																																																																													1
AACTAC/AGTTGT	1																																																																																																																																																																																																																																																													1
AACTAG/AGTTCT	1																																																																																																																																																																																																																																																													1
AACTCT/AGAGTT	2																																																																																																																																																																																																																																																													2
AACTGC/AGTTGC	1																																																																																																																																																																																																																																																													1
AACTTC/AAGTTG	1																																																																																																																																																																																																																																																													1
AACTTG/AAGTTC	1																																																																																																																																																																																																																																																													1
AAGAAT/ATTCTT	9																																																																																																																																																																																																																																																													9
AAGAGC/CTCTTG	1																																																																																																																																																																																																																																																													1
AAGAGG/CCTCTT	1																																																																																																																																																																																																																																																													1
AAGATG/ATCTTC	2	1		1																																																																																																																																																																																																																																																										4
AAGATT/AATCTT	3																																																																																																																																																																																																																																																													3
AAGTAT/ACTTAT	2																																																																																																																																																																																																																																																													2
AAGTCT/ACTTAG	1																																																																																																																																																																																																																																																													1
AAGTGT/ACACTT	2																																																																																																																																																																																																																																																													2
AATACC/ATTGGT	2				1																																																																																																																																																																																																																																																									3
AATACT/AGTATT	1																																																																																																																																																																																																																																																													1
AATAGC/ATTGCT	1																																																																																																																																																																																																																																																													1
AATAGT/ACTATT	7																																																																																																																																																																																																																																																													7
AATATC/ATATTG	3					1																																																																																																																																																																																																																																																								4
AATATG/ATATTC	2	1																																																																																																																																																																																																																																																												3
AATATT/AATATT	22	1																																																																																																																																																																																																																																																												23
AATCAC/ATTGTG	2																																																																																																																																																																																																																																																													2
AATCAG/ATTCTG	1																																																																																																																																																																																																																																																													1
AATCAT/ATGATT	6													1																																																																																																																																																																																																																																																7
AATGAC/ATTGTC	2	1																																																																																																																																																																																																																																																												3
AATGAG/ATTCTC	1																																																																																																																																																																																																																																																													1
AATGAT/ATCATT	24	2																																																																																																																																																																																																																																																												26
AATGGC/ATTGCC	1																																																																																																																																																																																																																																																													1
AATGGT/ACCATT	1																																																																																																																																																																																																																																																													1
AATGTC/ACATTG	1																																																																																																																																																																																																																																																													1
AATTAC/AATTGT	3																																																																																																																																																																																																																																																													3
AATTAG/AATTCT	7	1																																																																																																																																																																																																																																																												8
AATTAT/AATTAT	32	1																																																																																																																																																																																																																																																												33
AATTCC/AATTGG	2																																																																																																																																																																																																																																																													2
ACACAT/ATGTGT	1																																																																																																																																																																																																																																																													1
ACACGC/CGTGTG	4			1	1			1	1																																																																																																																																																																																																																																																					8
ACACTC/AGTGTG	1																																																																																																																																																																																																																																																													1
ACAGAG/CTCTGT	3																																																																																																																																																																																																																																																													3
ACAGTG/ACTGTC	1																																																																																																																																																																																																																																																													1
ACATAT/ATATGT	9																																																																																																																																																																																																																																																													9
ACATGT/ACATGT	1																																																																																																																																																																																																																																																													1
ACCATC/ATGGTG	1	1																																																																																																																																																																																																																																																												2
ACCATG/ATGGTC	1																																																																																																																																																																																																																																																													1
ACCCCC/GGGGGT	1																																																																																																																																																																																																																																																													1
ACCGCC/CGGTGG	1																																																																																																																																																																																																																																																													1
ACCTAT/AGGTAT	1																																																																																																																																																																																																																																																													1
ACCTGG/AGGTCC	1																																																																																																																																																																																																																																																													1
ACGAGG/CCTCGT		1																																																																																																																																																																																																																																																												1
ACGGCC/CCGTGG	1																																																																																																																																																																																																																																																													1
ACTATC/AGTGAT	2																																																																																																																																																																																																																																																													2
ACTATG/AGTCAT	1																																																																																																																																																																																																																																																													1
ACTCAT/AGTATG		1																																																																																																																																																																																																																																																												1
ACTGCT/AGCAGT			1																																																																																																																																																																																																																																																											1
AGAGAT/ATCTCT	1																																																																																																																																																																																																																																																													1
AGAGGC/CCTCTG	1																																																																																																																																																																																																																																																													1
AGAGGG/CCCTCT		1																																																																																																																																																																																																																																																												1
AGATAT/ATATCT	1																																																																																																																																																																																																																																																													1
AGCATC/ATGCTG	1																																																																																																																																																																																																																																																													1
AGGGGC/CCCCTG	1																																																																																																																																																																																																																																																													1
AGGGGG/CCCCCT	1																																																																																																																																																																																																																																																													1
ATATCG/ATATCG	2																																																																																																																																																																																																																																																													2
ATCCCG/ATCGGG		1																																																																																																																																																																																																																																																												1
