Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_021877175.1/fasta/hub_GCA_021877175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              67
Total size of examined sequences (bp):           4993604
Total number of identified SSRs:                 28
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	11
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	4				4
GC	-	-	-	1				1
AGC	-	-	1					1
CAG	-	-	1					1
CCG	-	-	3					3
CCT	-	-		1				1
CGC	-	-	1					1
GCC	-	-	1					1
GCG	-	-		1				1
TAA	-	-	1					1
TGG	-	-	1					1
AAAAT	1							1
CGCGC	1							1
CGCGG	1							1
GGCGC	1							1
ACCGAT	1							1
ATCACC	1							1
CCATGA							1	1
CGACTT	1							1
CGGCTT	1							1
CTGGCG	1							1
GCCAGC	1							1
TCGCTG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	5				5
AAT/ATT	-	-	1					1
ACC/GGT	-	-	1					1
AGC/CTG	-	-	2					2
AGG/CCT	-	-		1				1
CCG/CGG	-	-	5	1				6
AAAAT/ATTTT	1							1
CCGCG/CGCGG	3							3
AAGCCG/CGGCTT	1							1
AAGTCG/ACTTCG	1							1
ACAGCG/CGCTGT	1							1
ACCATC/ATGGTG	1							1
ACCATG/ATGGTC							1	1
ACCGAT/ATCGGT	1							1
AGCGCC/CGCTGG	2							2
