Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_021877135.1/fasta/hub_GCA_021877135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              57
Total size of examined sequences (bp):           5009763
Total number of identified SSRs:                 27
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	10
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4			4
GC	-	-	-	1			1
AGC	-	-	1				1
CAG	-	-	1				1
CCG	-	-	3				3
CGC	-	-	1				1
CGG	-	-	1				1
GCG	-	-		1			1
TAA	-	-	1				1
TGG	-	-	1				1
ATTTT	1						1
CGCGC	1						1
CGCGG	1						1
GGCGC	1						1
ACCGAT	1						1
ATCACC	1						1
CCATGA						1	1
CGACTT	1						1
CGGCTT	1						1
CTGGCG	1						1
GCCAGC	1						1
TCGCTG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5			5
AAT/ATT	-	-	1				1
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2				2
CCG/CGG	-	-	5	1			6
AAAAT/ATTTT	1						1
CCGCG/CGCGG	3						3
AAGCCG/CGGCTT	1						1
AAGTCG/ACTTCG	1						1
ACAGCG/CGCTGT	1						1
ACCATC/ATGGTG	1						1
ACCATG/ATGGTC						1	1
ACCGAT/ATCGGT	1						1
AGCGCC/CGCTGG	2						2
