Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-38/megassr/results/hub_GCA_021875755.1/fasta/hub_GCA_021875755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              119
Total size of examined sequences (bp):           4961950
Total number of identified SSRs:                 26
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	11
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	4	4
GC	-	-	-	1	1
AGC	-	-	1		1
CAG	-	-	1		1
CCG	-	-	1		1
CCT	-	-		1	1
CGC	-	-	1		1
CGG	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1	1	2
TAA	-	-	1		1
TGG	-	-	1		1
CGCGC	1				1
CGCGG	1				1
GGCGC	1				1
AAGCCG	1				1
ACCGAT	1				1
ATCACC	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
TCGCTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	5	5
AAT/ATT	-	-	1		1
ACC/GGT	-	-	1		1
AGC/CTG	-	-	2		2
AGG/CCT	-	-		1	1
CCG/CGG	-	-	5	1	6
CCGCG/CGCGG	3				3
AAGCCG/CGGCTT	1				1
AAGTCG/ACTTCG	1				1
ACAGCG/CGCTGT	1				1
ACCATC/ATGGTG	1				1
ACCGAT/ATCGGT	1				1
AGCGCC/CGCTGG	2				2
