Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_020881295.1/fasta/hub_GCA_020881295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              172
Total size of examined sequences (bp):           1451997
Total number of identified SSRs:                 11
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	2
5	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-				1		1
TA	-	-	-	1					1
AAT	-	-	1						1
ATG	-	-						1	1
AAAT	-	2							2
AAAAG	1								1
ACTTT			1						1
TTTTC		1							1
AAACTT	1								1
TTCTTT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1			1		2
AAT/ATT	-	-	1						1
ATC/ATG	-	-						1	1
AAAT/ATTT	-	2							2
AAAAG/CTTTT	1	1							2
AAAGT/ACTTT			1						1
AAAAAG/CTTTTT	1								1
AAACTT/AAGTTT	1								1
