Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-137/megassr/results/hub_GCA_020548845.1/fasta/hub_GCA_020548845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           4708173
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	5
4	2
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-		1					1
CG	-	-	-	5						5
GC	-	-	-	1						1
CGG	-	-	1							1
GCA	-	-							1	1
GCC	-	-	1							1
GCG	-	-	1							1
GCT	-	-	1							1
GCCA	-	1								1
TAAA	-	1								1
GCGCA	1									1
GGCGC	1									1
AAATAC					1					1
AGACCG	1									1
CGACTT	1									1
CTGGCG	1									1
GCCAGC	1									1
TCGTTA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-		1					1
CG/CG	-	-	-	6						6
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	3							3
AAAT/ATTT	-	1								1
AGCC/CTGG	-	1								1
AGCGC/CGCTG	1									1
CCGCG/CGCGG	1									1
AAATAC/ATTTGT					1					1
AACGAT/ATCGTT	1									1
AAGTCG/ACTTCG	1									1
ACCGAG/CGGTCT	1									1
AGCGCC/CGCTGG	2									2
