Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCA_020548205.1/fasta/hub_GCA_020548205.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           4892604
Total number of identified SSRs:                 30
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	3
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3		1				4
GC	-	-	-	2						2
CCG	-	-	2							2
CGC	-	-	1							1
CGG	-	-	1							1
CTG	-	-	1						1	2
GCC	-	-	1							1
GCG	-	-	1							1
GCT	-	-	1							1
GCCA	-	1								1
AAAAT	1									1
CGCGC	1									1
GGCGC	1									1
AAAGCA		1								1
CAGCGC	1									1
CGACTT	1									1
CGGTCT						1				1
CTGGCG	1									1
GACCAC				1						1
GACCAT			1							1
GCAGGA			1							1
GCCAGC	1									1
TAAAAA	1									1
TGAGTA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5		1				6
AGC/CTG	-	-	2						1	3
CCG/CGG	-	-	6							6
AGCC/CTGG	-	1								1
AAAAT/ATTTT	1									1
CCGCG/CGCGG	2									2
AAAAAT/ATTTTT	1									1
AAAAGC/CTTTTG		1								1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT				1						1
ACCATG/ATGGTC			1							1
ACCGAG/CGGTCT						1				1
ACTCAT/AGTATG	1									1
AGCAGG/CCTGCT			1							1
AGCGCC/CGCTGG	3									3
