Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_020404365.1/fasta/hub_GCA_020404365.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              16
Total size of examined sequences (bp):           1357829
Total number of identified SSRs:                 17
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	6
4	1
5	1
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-		1			1
CT	-	-	-	1		1		2
TA	-	-	-	2	2		1	5
AAT	-	-	1					1
ATA	-	-	1					1
ATT	-	-	2					2
GGT	-	-	1	1				2
AAAT	-	1						1
AAATT	1							1
TTATTT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AG/CT	-	-	-	1		1		2
AT/AT	-	-	-	2	3		1	6
AAT/ATT	-	-	4					4
ACC/GGT	-	-	1	1				2
AAAT/ATTT	-	1						1
AAATT/AATTT	1							1
AAAAAT/ATTTTT	1							1
