Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCA_019932135.1/fasta/hub_GCA_019932135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           5283451
Total number of identified SSRs:                 27
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
TA	-	-	-	1							1
CCG	-	-	2								2
CTG	-	-						1			1
GCC	-	-	1								1
GCG	-	-	1								1
GCT	-	-	1								1
GGC	-	-	1								1
GCCA	-	1									1
TGTT	-				1						1
CAGCG	1										1
CGCGC	1										1
CGCTG	1										1
GGCGC	1										1
AAGCCG	1										1
AAGGAA	1										1
ACAGAA										1	1
ATTTGT			1								1
CGACTT	1										1
CTGGCG	1										1
GCAGAA			1								1
GCCAGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5							5
AGC/CTG	-	-	1					1			2
CCG/CGG	-	-	5								5
AAAC/GTTT	-				1						1
AGCC/CTGG	-	1									1
AGCGC/CGCTG	2										2
CCGCG/CGCGG	2										2
AAAAGG/CCTTTT	1										1
AAACAG/CTGTTT										1	1
AAATAC/ATTTGT			1								1
AAGCAG/CTGCTT			1								1
AAGCCG/CGGCTT	1										1
AAGTCG/ACTTCG	1										1
AGCGCC/CGCTGG	2										2
