Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCA_019932055.1/fasta/hub_GCA_019932055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           4671955
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	5		1	6
GC	-	-	-	1			1
AGC	-	-	1				1
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	1				1
GCA	-	-	1				1
GCC	-	-	1				1
GCG	-	-	2				2
TATT	-	1					1
AGGGA	1						1
CGCGC	1						1
GCGCA	1						1
GCGCG	1						1
GGCGC	1						1
CCATCA	1						1
CGACTT	1						1
CTGGCG	1						1
GCACAG	1						1
TGGTCG					1		1
TGTTTA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	6		1	7
AGC/CTG	-	-	2				2
CCG/CGG	-	-	6				6
AAAT/ATTT	-	1					1
AAGGG/CCCTT	1						1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	3						3
AAACAT/ATGTTT	1						1
AAGTCG/ACTTCG	1						1
ACAGGC/CCTGTG	1						1
ACCACG/CGTGGT					1		1
ACCATC/ATGGTG	1						1
AGCGCC/CGCTGG	1						1
