Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCA_019931995.1/fasta/hub_GCA_019931995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              60
Total size of examined sequences (bp):           4654865
Total number of identified SSRs:                 31
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	10
4	1
5	3
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	4			4
GC	-	-	-	1			1
CCG	-	-	2				2
CGC	-	-	1				1
CGG	-	-	1				1
CTG	-	-		1			1
GCC	-	-	1				1
GCG	-	-	1				1
GCT	-	-	2				2
GGT	-	-	1				1
GCCA	-	1					1
CGCGC	1						1
GCGCA	1						1
GGCGC	1						1
AAAGCA	1						1
CACGAC	1						1
CCACGA						1	1
CCATGA	2						2
CCGGAG		1					1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
TGAGTA	1						1
TTTTTA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	5			5
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2	1			3
CCG/CGG	-	-	6				6
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAAAAT/ATTTTT	1						1
AAAAGC/CTTTTG	1						1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT	1					1	2
ACCATG/ATGGTC	2						2
ACTCAT/AGTATG	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	2						2
