Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-117/megassr/results/hub_GCA_019931945.1/fasta/hub_GCA_019931945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              57
Total size of examined sequences (bp):           4806195
Total number of identified SSRs:                 20
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	10
5	2
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4		4
GC	-	-	-	2		2
AGC	-	-	1			1
ATA	-	-	1			1
CCG	-	-	1			1
CGC	-	-	1			1
CGG	-	-	1			1
CTG	-	-	1		1	2
GCC	-	-	1			1
GCG	-	-	1			1
TAA	-	-	1			1
CGCGC	1					1
GGCGC	1					1
CGACTT	1					1
GCCAGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	6		6
AAT/ATT	-	-	2			2
AGC/CTG	-	-	2		1	3
CCG/CGG	-	-	5			5
CCGCG/CGCGG	2					2
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	1					1
