Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCA_019931915.1/fasta/hub_GCA_019931915.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           5231167
Total number of identified SSRs:                 28
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AT	-	-	-	1								1
CG	-	-	-	3								3
GC	-	-	-	2								2
CCG	-	-	1									1
CGG	-	-	1									1
CTG	-	-				1						1
GCC	-	-	2									2
GCG	-	-	1									1
GCT	-	-	1									1
GCCA	-	1										1
TGTT	-									1		1
AAAAT	1											1
CAGCG	1											1
CGCGC	1											1
CGCTG	1											1
GGCGC	1											1
ACAGAA											1	1
ACCACG									1			1
ATTTGT			1									1
CGACTT	1											1
CGGCTT	1											1
CTGGCG	1											1
GCAGAA			1									1
GCCAGC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AT/AT	-	-	-	1								1
CG/CG	-	-	-	5								5
AGC/CTG	-	-	1			1						2
CCG/CGG	-	-	5									5
AAAC/GTTT	-									1		1
AGCC/CTGG	-	1										1
AAAAT/ATTTT	1											1
AGCGC/CGCTG	2											2
CCGCG/CGCGG	2											2
AAACAG/CTGTTT											1	1
AAATAC/ATTTGT			1									1
AAGCAG/CTGCTT			1									1
AAGCCG/CGGCTT	1											1
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT									1			1
AGCGCC/CGCTGG	2											2
