Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_019802515.2/fasta/hub_GCA_019802515.2_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              73
Total size of examined sequences (bp):           21789544
Total number of identified SSRs:                 69246
Number of SSR containing sequences:              72
Number of sequences containing more than 1 SSR:  72
Number of SSRs present in compound formation:    29975


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11770
2	38214
3	6869
4	5286
5	4958
6	2149

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	646	540	498	461	453	403	353	332	293	298	214	189	174	106	113	96	104	71	86	90	55	47	40	25	29	21	16	22	15	11	11	9	12	5	6	6	2	6	4	5	6	1	1		1	2	3			2	1	1	2			2	1	2		1		3			2		4	2	2		1			1		5		2															1	1																	1	5918
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																											1															1																																																																						2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1																																																																																														1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	611	554	508	464	406	396	361	319	305	244	246	188	154	103	121	118	107	101	74	80	53	61	40	28	25	10	10	20	7	9	8	10	8	6	4	5	8	5	4	3	8	2	4	3		2	1	2	3		1	4	1	3	3		3	2	1	1		1	1			1	2		3				1	1	1	4	2						1					1	2																							5849
AC	-	-	-	24	10	12	1	1	1	1																																																																																																																							50
AG	-	-	-	9	2	3	1			2																																																																																																																							17
AT	-	-	-	3556	2406	2039	1991	1955	1848	1831	1666	1461	1187	990	765	572	427	358	218	156	105	54	38	14	9	8	8	4	2	4	1	3	2				1																																																																																												23679
CA	-	-	-	13	7	5		2																																																																																																																									27
CT	-	-	-	4	3			1																																																																																																																									8
GA	-	-	-	3	3																																																																																																																												6
GC	-	-	-	1																																																																																																																													1
GT	-	-	-	20	11	5	3	2																																																																																																																									41
TA	-	-	-	2813	1763	1400	1295	1111	1016	931	939	716	578	473	427	258	230	140	95	62	20	26	12	5	3	2	1					1																																																																																																	14317
TC	-	-	-	10	4	2				1																																																																																																																							17
TG	-	-	-	32	8	6	2		2				1																																																																																																																				51
AAC	-	-	23	12	4	7	1	3	2	1	1					1						1																																																																																																											56
AAG	-	-	17	4	5	3	1		1																																																																																																																								31
AAT	-	-	413	251	198	139	94	56	40	15	15	12	5	1	4	4		1	1			1																																																																																																											1250
ACA	-	-	7	1	3	3		1	1				1																																																																																																																				17
ACC	-	-			1																																																																																																																												1
ACG	-	-	1																																																																																																																														1
ACT	-	-	8	7	3	1		1																																																																																																																									20
AGA	-	-	10	6			1																																																																																																																										17
AGG	-	-	1		1	1																																																																																																																											3
AGT	-	-	5	3		1																																																																																																																											9
ATA	-	-	406	198	153	100	72	52	36	18	17	8	3	4	4										1																																																																																																								1072
ATC	-	-	49	20	4	6	3			1																																																																																																																							83
ATG	-	-	53	12	5	1	1	1	1	1																	1																																																																																																						76
ATT	-	-	314	218	152	140	72	42	33	22	16	5	7	2	5			2	1			1																																																																																																											1032
CAA	-	-	7	6	1	2		3	1	1							1	1																																																																																																															23
CAC	-	-	1																																																																																																																														1
CAT	-	-	17	7	3	1	2																																																																																																																										30
CCA	-	-	5																																																																																																																														5
CCT	-	-	1																																																																																																																														1
CGA	-	-	1																																																																																																																														1
CTA	-	-	6	2		1																																																																																																																											9
CTC	-	-	1	1																																																																																																																													2
CTT	-	-	10	5	1		1		1																																																																																																																								18
GAA	-	-	26	16	7	4	1	1	1	1																																																																																																																							57
GAC	-	-				1																																																																																																																											1
GAG	-	-	6	2		2																																																																																																																											10
GAT	-	-	67	15	8	1	5	1	2	1																																																																																																																							100
GGA	-	-		3																																																																																																																													3
GGT	-	-	1	1		1																																																																																																																											3
GTA	-	-	6	3	3				1																																																																																																																								13
GTG	-	-	2		1																																																																																																																												3
GTT	-	-	3	2	3	2	2	1										1																																																																																																															14
TAA	-	-	206	119	87	57	36	40	18	6	5	6	4	2	2	1	1								1																																																																																																								591
TAC	-	-	15	7	2	6	1	1				1						1			1																																																																																																												35
TAG	-	-	13	10	2	4		2												1																																																																																																													32
TAT	-	-	382	221	201	125	93	57	38	12	15	5	6	5	2	2	1	1					1																																																																																																										1167
TCA	-	-	33	13	9	2	2										1																																																																																																																60
TCC	-	-	1		1																																																																																																																												2
TCG	-	-	2																																																																																																																														2
TCT	-	-	12	6	8	4	1	2	1																																																																																																																								34
TGA	-	-	12	7	4	2				1	1	1																																																																																																																					28
TGG	-	-	1																																																																																																																														1
TGT	-	-	16	3	4	3	4	1	1				1					1	1																																																																																																														35
TTA	-	-	307	140	106	78	63	53	28	13	11	8	4	1	2																																																																																																																		814
TTC	-	-	30	12	10	2	2	1	1	1																																																																																																																							59
TTG	-	-	24	8	5	3	1	1	3			1			1																																																																																																																		47
AAAC	-	13	2	1	1	2																																																																																																																											19
AAAG	-	8	5	1	1	1				1																																																																																																																							17
AAAT	-	407	222	136	47	18	11	5	1		1																																																																																																																						848
AACA	-	2	1																																																																																																																														3
AAGA	-	5		2																																																																																																																													7
AAGG	-	1																																																																																																																															1
AAGT	-	1																																																																																																																															1
AATA	-	235	153	97	42	18	11		4	2																																																																																																																							562
AATC	-			1																																																																																																																													1
AATG	-	2		4																																																																																																																													6
AATT	-	3	2	1																																																																																																																													6
ACAA	-		1																																																																																																																														1
ACAT	-	18	13	4		2	1			1	1					1	1			1			1	1						1																																																																																																			46
AGAA	-	2	3																																																																																																																														5
ATAA	-	407	164	86	39	10	8	4	3		1				2																																																																																																																		724
ATAC	-	59	24	7	4	2	3	3	2	1		1	1			1										1																																																																																																							109
ATCT	-	1																																																																																																																															1
ATGA	-	1					1																																																																																																																										2
ATGT	-	16	6	3	1	2	1	1											1																																																																																																														31
ATTA	-	5		2																																																																																																																													7
ATTC	-	5	3	1																																																																																																																													9
ATTG	-	1																																																																																																																															1
ATTT	-	208	117	65	25	13	5	5	2	1																																																																																																																							441
CAAA	-	2																																																																																																																															2
CAAT	-	1	1																																																																																																																														2
CATA	-	15	4	2	1	1			1																									1																																																																																															25
CATC	-			1																																																																																																																													1
CTTA	-			1																																																																																																																													1
CTTT	-			2																																																																																																																													2
GAAA	-	8	4		2																																																																																																																												14
GAAT	-		1																																																																																																																														1
GATA	-	1																																																																																																																															1
GTAT	-	16	10	2		1					1			1				1																																																																																																															32
GTTT	-	4			1																																																																																																																												5
TAAA	-	143	57	24	15	6				1																																																																																																																							246
TAAC	-	1																																																																																																																															1
TAAT	-	6	1																																																																																																																														7
TACA	-	7	9	1			1										1							1				1																																																																																																					21
TAGA	-	2																																																																																																																															2
TAGC	-	1																																																																																																																															1
TATC	-	2																																																																																																																															2
TATG	-	53	27	8	8	3	1	1	1	1											1																																																																																																												104
TATT	-	417	214	104	56	23	12		7	2																																																																																																																							835
TCAT	-		1																																																																																																																														1
TCTT	-	4			1																																																																																																																												5
TGAA	-	1																																																																																																																															1
TGAT	-				1																																																																																																																												1
TGCA	-	1																																																																																																																															1
TGTA	-	20	4	4		1											1													1																																																																																																			31
TGTT	-	5		1															1																																																																																																														7
TTAA	-	3	2		1																																																																																																																												6
TTAG	-	1																																																																																																																															1
TTAT	-	241	107	70	27	14	4	1	4	1																																																																																																																							469
TTCA	-		1																																																																																																																														1
TTCC	-	1																																																																																																																															1
TTCT	-	9	2	1																																																																																																																													12
TTGT	-	1	1			1	1																																																																																																																										4
TTTA	-	277	121	69	26	23	7	5	1	2	1																																																																																																																						532
TTTC	-	12	8	4	4	2				1																																																																																																																							31
TTTG	-	17	4	3	2	1										2																																																																																																																	29
AAAAC	24	5	7	1																																																																																																																													37
AAAAG	51	13	5																																																																																																																														69
AAAAT	424	175	69	20	5	1											1																																																																																																																695
AAACA	4	1																																																																																																																															5
AAAGA	10	3	1	1		1																																																																																																																											16
AAAGC	1																																																																																																																																1
AAAGG	1	1														1																																																																																																																	3
AAATA	117	47	21	3	3	2																																																																																																																											193
AAATC	2	1	1																																																																																																																														4
AAATG	13	3	2																																																																																																																														18
AAATT	10	1	4	1																																																																																																																													16
AACAA	3	1		1																																																																																																																													5
AACAC	2																																																																																																																																2
AACAG		1																																																																																																																															1
AACAT	1		1																																																																																																																														2
AAGAA	11	2	5																																																																																																																														18
AAGAT	2			1																																																																																																																													3
AATAA	134	37	9	3	2																																																																																																																												185
AATAC	6	1			1	1																																																																																																																											9
AATAG	2			1																																																																																																																													3
AATAT	89	17	12	5	3	1				1	1			2																																																																																																																			131
AATTA	8	1																																																																																																																															9
AATTC		2	1																																																																																																																														3
AATTG			2																																																																																																																														2
AATTT	2																																																																																																																																2
ACAAA	4	2			1																																																																																																																												7
ACAAC	1																																																																																																																																1
ACAAG	1																																																																																																																																1
ACAAT		2																																																																																																																															2
ACATA	1																																																																																																																																1
ACATC	1																																																																																																																																1
AGAAA	12	3	4																																																																																																																														19
AGAAC	1																																																																																																																																1
AGAAT	2																																																																																																																																2
AGGAA	2	1																																																																																																																															3
AGGGA	1																																																																																																																																1
AGTAT		1																																																																																																																															1
ATAAA	88	22	11																																																																																																																														121
ATAAC	1																																																																																																																																1
ATAAG	1																																																																																																																																1
ATAAT	66	18	6	3		1	1																																																																																																																										95
ATACA	1																																																																																																																																1
ATACT		1																																																																																																																															1
ATAGA	1																																																																																																																																1
ATATA	320	66	18	6	3	3		3	1	2			1	1																																																																																																																			424
ATATC	1		1																																																																																																																														2
ATATG	3	1	1						1																																																																																																																								6
ATATT	45	16	8	3	1	1	1		1		1				1																																																																																																																		78
ATCAA	1																																																																																																																																1
ATCTA	1																																																																																																																																1
ATGAA	3	1																																																																																																																															4
ATGAG		1																																																																																																																															1
ATGAT		1																																																																																																																															1
ATGTT	1																																																																																																																																1
ATTAA	4	5																																																																																																																															9
ATTAT	56	17	3	1	2	1			1			1																																																																																																																					82
ATTCT	1																																																																																																																																1
ATTTA	11	3		1																																																																																																																													15
ATTTC	13	3	1			1																																																																																																																											18
ATTTG	3			2																																																																																																																													5
ATTTT	121	34	19	5	1																																																																																																																												180
CAAAA	2		1					1																																																																																																																									4
CAAAT		1																																																																																																																															1
CAATA	1	1																																																																																																																															2
CAATT	1																																																																																																																																1
CACAT	1																																																																																																																																1
CACCA	1																																																																																																																																1
CATAA	1																																																																																																																																1
CATAT	2																																																																																																																																2
CATCA	3																																																																																																																																3
CATTC	2																																																																																																																																2
CATTT		1																																																																																																																															1
CCACA	2																																																																																																																																2
CCTTC		1																																																																																																																															1
CTTTC	2																																																																																																																																2
CTTTT	15	3																																																																																																																															18
GAAAA	31	6	3																																																																																																																														40
GAAAG		1																																																																																																																															1
GAAAT	5	1																																																																																																																															6
GAATA	1																																																																																																																																1
GAATT		1																																																																																																																															1
GATAA	1																																																																																																																																1
GATAT	1		2																																																																																																																														3
GATTT	1																																																																																																																																1
GCCAA	1																																																																																																																																1
GGAAA			1																																																																																																																														1
GTATA	1																																																																																																																																1
GTGGT	1																																																																																																																																1
GTTTG		1																																																																																																																															1
GTTTT	1																																																																																																																																1
TAAAA	64	25	8	2	2							1																																																																																																																					102
TAAAG	1																																																																																																																																1
TAAAT	14																																																																																																																																14
TAATA	25	12	5	1							1				1																																																																																																																		45
TAATG	2																																																																																																																																2
TAATT	5	2																																																																																																																															7
TACAA		1																																																																																																																															1
TACAT	1																																																																																																																																1
TATAA	52	14	1	1											1																																																																																																																		69
TATAC	1																																																																																																																																1
TATAT	333	50	21	8	2	2	1	1	1			1																																																																																																																					420
TATCA	1			1																																																																																																																													2
TATGT	3	1																																																																																																																															4
TATTA	74	22	5	6	6	2			1				2		1					1																																																																																																													120
TATTC	2																																																																																																																																2
TATTG	5	2			1																																																																																																																												8
TATTT	139	43	21	3	3	1	1		1																																																																																																																								212
TCAAA	2																																																																																																																																2
TCATA	1		1																																																																																																																														2
TCATT	2																																																																																																																																2
TCCAT	1																																																																																																																																1
TCTCT	1																																																																																																																																1
TCTTA	1																																																																																																																																1
TCTTC	1																																																																																																																																1
TCTTT	7		1																																																																																																																														8
TGAAA	1																																																																																																																																1
TGATA	4		2	1																																																																																																																													7
TGATG	5																																																																																																																																5
TGTAT	1	1																																																																																																																															2
TGTTC			1																																																																																																																														1
TGTTT	8	3	1																																																																																																																														12
TTAAA	3	1	1																																																																																																																														5
TTAAT	10	1																																																																																																																															11
TTATA	55	16	5	5		3		1	2				1																																																																																																																				88
TTATC	1																																																																																																																																1
TTATG		1																																																																																																																															1
TTATT	198	59	28	9		2					1																																																																																																																						297
TTCAT	1																																																																																																																																1
TTCTA	1		1																																																																																																																														2
TTCTT	14	3	3																																																																																																																														20
TTGAT		1																																																																																																																															1
TTGTA	2	1																																																																																																																															3
TTGTT	4	1	1		1																																																																																																																												7
TTTAA	7	2																																																																																																																															9
TTTAT	162	66	21	5	1																																																																																																																												255
TTTCA	4	3		1																																																																																																																													8
TTTCC	3	3																																																																																																																															6
TTTCT	19	5	1	2																																																																																																																													27
TTTGA	1																																																																																																																																1
TTTGC	1																																																																																																																																1
TTTGT	9	2	1																																																																																																																														12
TTTTA	257	98	41	5	3	1	3						1																																																																																																																				409
TTTTC	58	13		4																																																																																																																													75
TTTTG	23	7	4	1	2																																																																																																																												37
AAAAAC	7	3	1	1			2																																																																																																																										14
AAAAAG	37	8	1																																																																																																																														46
AAAAAT	85	25	6	2																																																																																																																													118
AAAACA	1																																																																																																																																1
AAAAGA	13	3	1	1																																																																																																																													18
AAAAGG	1		1																																																																																																																														2
AAAATA	35	10	2																																																																																																																														47
AAAATC	1																																																																																																																																1
AAAATG	4	3	1																																																																																																																														8
AAAATT	6																																																																																																																																6
AAACAA	1	1		1																																																																																																																													3
AAACAT	2	1		2																																																																																																																													5
AAACGG		1																																																																																																																															1
AAAGAA	8	1	1																																																																																																																														10
AAAGAG		1																																																																																																																															1
AAAGAT	10																																																																																																																																10
AAAGGA	1	1	2		1																																																																																																																												5
AAAGTA		1																																																																																																																															1
AAATAA	28	2	2																																																																																																																														32
AAATAG						1																																																																																																																											1
AAATAT	41	14	3			1					1																																																																																																																						60
AAATCA	1																																																																																																																																1
AAATGA		3																																																																																																																															3
AAATGG	1																																																																																																																																1
AAATGT	2																																																																																																																																2
AAATTA	1																																																																																																																																1
AAATTT	1																																																																																																																																1
AACAAA	1	1																																																																																																																															2
AACAAT	1		1																																																																																																																														2
AACAGA	1																																																																																																																																1
AACATA	2																																																																																																																																2
AACATC		1																																																																																																																															1
AACCAT	1																																																																																																																																1
AACTAT	1																																																																																																																																1
AAGAAA	10	4																																																																																																																															14
AAGATG	2																																																																																																																																2
AAGGAA	3		1																																																																																																																														4
AAGGAC	1																																																																																																																																1
AAGGTC					1																																																																																																																												1
AATAAA	23	5	1																																																																																																																														29
AATAAC	6	1																																																																																																																															7
AATAAG	1																																																																																																																																1
AATAGT	2	2																																																																																																																															4
AATATA	29	7	1	1																																																																																																																													38
AATATT	5																																																																																																																																5
AATCAG			1																																																																																																																														1
AATCAT		1																																																																																																																															1
AATGAA	2	1																																																																																																																															3
AATGAT	3																																																																																																																																3
AATGGA																		1																																																																																																															1
AATGTT	1																																																																																																																																1
AATTAA	2																																																																																																																																2
AATTAT	3	2																																																																																																																															5
AATTCT	1																																																																																																																																1
AATTGA		1																																																																																																																															1
AATTTA	1																																																																																																																																1
AATTTT	1																																																																																																																																1
ACAAAA	1				1																																																																																																																												2
ACAAAC		3	1																																																																																																																														4
ACAAAT	6										1																																																																																																																						7
ACAAGA	2																																																																																																																																2
ACAATA	2																																																																																																																																2
ACACAT		1																																																																																																																															1
ACATAA	2	1																																																																																																																															3
ACATAT	3	1																																																																																																																															4
ACATCA	1																																																																																																																																1
ACATGT	1																																																																																																																																1
ACATTT	1	1																																																																																																																															2
ACCTCC	1																																																																																																																																1
ACTATG	1																																																																																																																																1
ACTATT	5		1																																																																																																																														6
AGAAAA	3	4	1																																																																																																																														8
AGAAAC	1																																																																																																																																1
AGAAGG	1	1																																																																																																																															2
AGAATA		1																																																																																																																															1
AGAGAA	2	1																																																																																																																															3
AGAGAT	1																																																																																																																																1
AGATAA	2	1																																																																																																																															3
AGATAT	1																																																																																																																																1
AGGAAA	1	1																																																																																																																															2
AGGAAG			1																																																																																																																														1
AGTAAT		1																																																																																																																															1
AGTATT	1																																																																																																																																1
AGTTGC	1																																																																																																																																1
ATAAAA	20	2	2																																																																																																																														24
ATAAAC	5	3																																																																																																																															8
ATAAAG	2				1																																																																																																																												3
ATAAAT	82	16	2	2		1																																																																																																																											103
ATAATG	5	2		1																																																																																																																													8
ATAATT	6	3																																																																																																																															9
ATACAC	1	2																																																																																																																															3
ATACAT	3	1																																																																																																																															4
ATAGTA	1																																																																																																																																1
ATATAA	71	5	2	1	1		1																																																																																																																										81
ATATAC	5			1																																																																																																																													6
ATATAG	4																																																																																																																																4
ATATGC	2																																																																																																																																2
ATATGT	7			1																																																																																																																													8
ATATTA	1																																																																																																																																1
ATATTC	2																																																																																																																																2
ATATTT	23	9	2		1						1																																																																																																																						36
ATCATA	1																																																																																																																																1
ATCATT	7	1				1																																																																																																																											9
ATCGTC						1																																																																																																																											1
ATCTTC	1																																																																																																																																1
ATCTTT	2																																																																																																																																2
ATGAAA		1																																																																																																																															1
ATGAAG	1																																																																																																																																1
ATGATA	7	1		1																																																																																																																													9
ATGATC	2																																																																																																																																2
ATGTAA	1																																																																																																																																1
ATGTAT	2	1		1																																																																																																																													4
ATGTTC	2	1			1																																																																																																																												4
ATGTTG	1																																																																																																																																1
ATGTTT	2		1																																																																																																																														3
ATTAAC	1																																																																																																																																1
ATTAAT	4																																																																																																																																4
ATTACA	1																																																																																																																																1
ATTACC	2	1																																																																																																																															3
ATTAGC		1																																																																																																																															1
ATTATA	7	1	1																																																																																																																														9
ATTATC	8	1																																																																																																																															9
ATTCCT	1																																																																																																																																1
ATTGAC	1																																																																																																																																1
ATTGTT	2	1			1																																																																																																																												4
ATTTAA	1	1																																																																																																																															2
ATTTAC	2	3																																																																																																																															5
ATTTAT	18	7	2																																																																																																																														27
ATTTGC	1																																																																																																																																1
ATTTGT	1																																																																																																																																1
ATTTTA	4																																																																																																																																4
ATTTTC	5	2	2	1																																																																																																																													10
ATTTTG	1																																																																																																																																1
ATTTTT	22	4	1	1		1																																																																																																																											29
CAAAAA	3																																																																																																																																3
CAAATG		1																																																																																																																															1
CAACAG	1																																																																																																																																1
CAATAA	1	3						1																																																																																																																									5
CATAAA	2																																																																																																																																2
CATATA	3																																																																																																																																3
CATCAA	2																																																																																																																																2
CATCCC	1																																																																																																																																1
CATCTG	1																																																																																																																																1
CATGAC			1																																																																																																																														1
CATGAT			1																																																																																																																														1
CATTAA	3																																																																																																																																3
CATTAC			1																																																																																																																														1
CATTAT	2		1																																																																																																																														3
CATTTA	1	1																																																																																																																															2
CATTTC			2																																																																																																																														2
CATTTG	1																																																																																																																																1
CATTTT		1																																																																																																																															1
CCACCT	1																																																																																																																																1
CCATTA	2																																																																																																																																2
CCATTT	1																																																																																																																																1
CCTTAT	1																																																																																																																																1
CCTTCC	1																																																																																																																																1
CCTTTA	2	1																																																																																																																															3
CCTTTC		1																																																																																																																															1
CCTTTT		1																																																																																																																															1
CGATGA	1																																																																																																																																1
CTATTA	2																																																																																																																																2
CTCTTT			1																																																																																																																														1
CTTATT	1																																																																																																																																1
CTTCAC		1																																																																																																																															1
CTTCAT	1																																																																																																																																1
CTTTTA	1	1																																																																																																																															2
CTTTTC	2	1																																																																																																																															3
CTTTTT	8	4	1																																																																																																																														13
GAAAAA	14	1	3	2					1																																																																																																																								21
GAAAAC		1																																																																																																																															1
GAAAAG	2	1																																																																																																																															3
GAAAAT	3	2																																																																																																																															5
GAAATA	2																																																																																																																																2
GAAATG																1																																																																																																																	1
GAAATT		1																																																																																																																															1
GAACAT	1																																																																																																																																1
GAACCT				1																																																																																																																													1
GAAGAC	1																																																																																																																																1
GAAGAT	3																																																																																																																																3
GAATAA	1																																																																																																																																1
GAATAT	1	1																																																																																																																															2
GACTCA		1																																																																																																																															1
GAGAAA	2																																																																																																																																2
GAGGAA		1																																																																																																																															1
GATAAA	2		1																																																																																																																														3
GATAAC	1			1																																																																																																																													2
GATAAT	2																																																																																																																																2
GATATA	2																																																																																																																																2
GATGAA	2																																																																																																																																2
GATGAC	1			1																																																																																																																													2
GCATTT	1																																																																																																																																1
GGAAAA	2																																																																																																																																2
GGAAAT	1																																																																																																																																1
GGTCTT	1																																																																																																																																1
GGTGAA	1																																																																																																																																1
GGTGGA	2																																																																																																																																2
GTAAAA	2																																																																																																																																2
GTAAAT	1																																																																																																																																1
GTAATA	2	1																																																																																																																															3
GTAATG	1																																																																																																																																1
GTATAT	5																																																																																																																																5
GTATTG	1																																																																																																																																1
GTATTT	1																																																																																																																																1
GTCAAT				1																																																																																																																													1
GTCTTC	1																																																																																																																																1
GTGAAG	1																																																																																																																																1
GTGATG	1																																																																																																																																1
GTGTTA		1																																																																																																																															1
GTGTTG	2																																																																																																																																2
GTTAAA	1																																																																																																																																1
GTTATC				1																																																																																																																													1
GTTATT	1																																																																																																																																1
GTTTAT		1	2		2																																																																																																																												5
TAAAAA	16	6																																																																																																																															22
TAAAAT	5	1																																																																																																																															6
TAAACA	2																																																																																																																																2
TAAATA	11	4	1																																																																																																																														16
TAAATG	1																																																																																																																																1
TAAATT	1																																																																																																																																1
TAACAA	1																																																																																																																																1
TAATAC	1																																																																																																																																1
TAATAG	6	5	2																																																																																																																														13
TAATGA	4																																																																																																																																4
TAATTA	3	1																																																																																																																															4
TAATTG		1	1																																																																																																																														2
TAATTT	1																																																																																																																																1
TACATA	1																																																																																																																																1
TACTAT	1	1																																																																																																																															2
TACTTC	1																																																																																																																																1
TAGATA	1																																																																																																																																1
TAGTAA	2		1																																																																																																																														3
TAGTGC	1																																																																																																																																1
TAGTGG	1																																																																																																																																1
TAGTTC	1																																																																																																																																1
TATAAA	15	1																																																																																																																															16
TATAAT	6	3																																																																																																																															9
TATACA			1			1																																																																																																																											2
TATAGA	1																																																																																																																																1
TATATC	1		1																																																																																																																														2
TATATG	6	3																																																																																																																															9
TATATT	76	16	4																																																																																																																														96
TATCAT	2	2																																																																																																																															4
TATCTA		1																																																																																																																															1
TATGTA	2	1																																																																																																																															3
TATGTG	1	1																																																																																																																															2
TATGTT	4	1																																																																																																																															5
TATTAA	2	1																																																																																																																															3
TATTAC	6	2	1	1																																																																																																																													10
TATTGT				1																																																																																																																													1
TATTTA	69	12	3		1																																																																																																																												85
TATTTC	1																																																																																																																																1
TATTTG	1	2																																																																																																																															3
TATTTT	36	13	1	1																																																																																																																													51
TCAAAA	3																																																																																																																																3
TCAAGA	1																																																																																																																																1
TCACCT	1																																																																																																																																1
TCATAA		1																																																																																																																															1
TCATAT		1																																																																																																																															1
TCATCG	2																																																																																																																																2
TCATCT	1			1																																																																																																																													2
TCATTA	2																																																																																																																																2
TCATTG		1																																																																																																																															1
TCATTT	1	1																																																																																																																															2
TCCATT	1																																																																																																																																1
TCCTCA	1																																																																																																																																1
TCCTCT	1																																																																																																																																1
TCCTTC	1																																																																																																																																1
TCCTTT	2																																																																																																																																2
TCGTCA		2																																																																																																																															2
TCGTGT	1																																																																																																																																1
TCTATA	1																																																																																																																																1
TCTCCT		1																																																																																																																															1
TCTCTA	1	1																																																																																																																															2
TCTGTA	1																																																																																																																																1
TCTGTT	1																																																																																																																																1
TCTTAT	1																																																																																																																																1
TCTTCA		1																																																																																																																															1
TCTTCC	2																																																																																																																																2
TCTTGA	1																																																																																																																																1
TCTTGT	1																																																																																																																																1
TCTTTA	1																																																																																																																																1
TCTTTC	1	1																																																																																																																															2
TCTTTG	2																																																																																																																																2
TCTTTT	4	2	1																																																																																																																														7
TGAAAA	1																																																																																																																																1
TGAACA	1																																																																																																																																1
TGAAGA		1																																																																																																																															1
TGAATC	1																																																																																																																																1
TGACGT	1																																																																																																																																1
TGATAA	2			1																																																																																																																													3
TGATGG	1																																																																																																																																1
TGATGT	1																																																																																																																																1
TGCTCT	3	1																																																																																																																															4
TGGTGC		1																																																																																																																															1
TGTATA	4																																																																																																																																4
TGTATG										1																																																																																																																							1
TGTATT	1																																																																																																																																1
TGTGTA	1																																																																																																																																1
TGTGTT	1																																																																																																																																1
TGTTCA	2		1																																																																																																																														3
TGTTCT		1																																																																																																																															1
TGTTGA	1																																																																																																																																1
TGTTTA	2		1																																																																																																																														3
TGTTTG		1																																																																																																																															1
TTAAAT	1																																																																																																																																1
TTAATA	1																																																																																																																																1
TTAATG	2																																																																																																																																2
TTAATT	1																																																																																																																																1
TTATAT	10																																																																																																																																10
TTATCA	1																																																																																																																																1
TTATCC	2		1																																																																																																																														3
TTATCT	3	1																																																																																																																															4
TTATGT	2																																																																																																																																2
TTATTC	3																																																																																																																																3
TTATTG	3	3		1																																																																																																																													7
TTATTT	19	3																																																																																																																															22
TTCATA		1																																																																																																																															1
TTCATC	2																																																																																																																																2
TTCATG	1																																																																																																																																1
TTCATT		2																																																																																																																															2
TTCCTC	1																																																																																																																																1
TTCCTT	1																																																																																																																																1
TTCTAT		1																																																																																																																															1
TTCTCC		1																																																																																																																															1
TTCTTA	2	1																																																																																																																															3
TTCTTT	13	3																																																																																																																															16
TTGTAA			1																																																																																																																														1
TTGTAT	2																																																																																																																																2
TTGTGT		1																																																																																																																															1
TTGTTA	2	1																																																																																																																															3
TTGTTC	1	1																																																																																																																															2
TTGTTT		1																																																																																																																															1
TTTAAT	3																																																																																																																																3
TTTACA		1																																																																																																																															1
TTTATA	38	4		1																																																																																																																													43
TTTATG	5	1	3	3																																																																																																																													12
TTTATT	38	5	1	1																																																																																																																													45
TTTCAT	1	1																																																																																																																															2
TTTCCT	3	1																																																																																																																															4
TTTCTA	1																																																																																																																																1
TTTCTC	3	1																																																																																																																															4
TTTCTT	11	4	3																																																																																																																														18
TTTGTA	1																																																																																																																																1
TTTGTC	1																																																																																																																																1
TTTGTG		4																																																																																																																															4
TTTGTT	1		1																																																																																																																														2
TTTTAA	8	1																																																																																																																															9
TTTTAC	3																																																																																																																																3
TTTTAT	25	6																																																																																																																															31
TTTTCA	3																																																																																																																																3
TTTTCC		1																																																																																																																															1
TTTTCT	12	6											1																																																																																																																				19
TTTTGT	1	1	2	2																																																																																																																													6
TTTTTA	55	19	6																																																																																																																														80
TTTTTC	32	13	6	2						1																																																																																																																							54
TTTTTG	8	3	1		1																																																																																																																												13

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1257	1094	1006	925	859	799	714	651	598	542	460	377	328	209	234	214	211	172	160	170	108	108	80	53	54	31	26	42	22	20	19	19	20	11	10	11	10	11	8	8	14	3	5	3	1	4	4	2	3	2	2	5	3	3	3	2	4	4	1	2		4	1		2	1	6	2	5		1		1	2	1	9	2	2					1					1	2				1	1																	1	11767
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1									1															1																																																																						3
AC/GT	-	-	-	89	36	28	6	5	3	1			1																																																																																																																				169
AG/CT	-	-	-	26	12	5	1	1		3																																																																																																																							48
AT/AT	-	-	-	6369	4169	3439	3286	3066	2864	2762	2605	2177	1765	1463	1192	830	657	498	313	218	125	80	50	19	12	10	9	4	2	4	1	4	2				1																																																																																												37996
CG/CG	-	-	-	1																																																																																																																													1
AAC/GTT	-	-	80	32	20	20	8	10	8	2	1	1	2		1	1	1	3	1			1																																																																																																											192
AAG/CTT	-	-	105	49	31	13	7	4	5	2																																																																																																																							216
AAT/ATT	-	-	2028	1147	897	639	430	300	193	86	79	44	29	15	19	7	2	4	2			2	1		2																																																																																																								5926
ACC/GGT	-	-	10	1	2	1																																																																																																																											14
ACG/CGT	-	-	4			1																																																																																																																											5
ACT/AGT	-	-	53	32	10	13	1	4	1			1						1		1	1																																																																																																												118
AGG/CCT	-	-	10	6	2	3																																																																																																																											21
ATC/ATG	-	-	231	74	33	13	13	2	3	4	1	1					1										1																																																																																																						377
AAAC/GTTT	-	44	9	5	4	4	1									2			1																																																																																																														70
AAAG/CTTT	-	48	22	10	8	3				2																																																																																																																							93
AAAT/ATTT	-	2335	1155	651	277	125	58	20	22	9	3				2																																																																																																																		4657
AACT/AGTT	-	2																																																																																																																															2
AAGG/CCTT	-	2																																																																																																																															2
AAGT/ACTT	-	1		1																																																																																																																													2
AATC/ATTG	-	2	1	1	1																																																																																																																												5
AATG/ATTC	-	9	6	5			1																																																																																																																										21
AATT/AATT	-	17	5	3	1																																																																																																																												26
ACAT/ATGT	-	204	97	31	14	12	7	5	4	3	2	1	1	1		2	3	1	1	1	1		1	2		1		1		2				1																																																																																															399
AGAT/ATCT	-	6																																																																																																																															6
AGCT/AGCT	-	1																																																																																																																															1
ATCC/ATGG	-			1																																																																																																																													1
ATGC/ATGC	-	1																																																																																																																															1
AAAAC/GTTTT	82	22	15	3	4			1																																																																																																																									127
AAAAG/CTTTT	228	51	23	7		1																																																																																																																											310
AAAAT/ATTTT	1704	606	248	55	20	7	4		1		1	1	1				1																																																																																																																2649
AAACC/GGTTT		1																																																																																																																															1
AAAGC/CTTTG	2																																																																																																																																2
AAAGG/CCTTT	8	6	1													1																																																																																																																	16
AAAGT/ACTTT	1																																																																																																																																1
AAATC/ATTTG	10	3	1	2																																																																																																																													16
AAATG/ATTTC	42	12	3	1		1																																																																																																																											59
AAATT/AATTT	74	16	5	2																																																																																																																													97
AACAC/GTGTT	3																																																																																																																																3
AACAG/CTGTT	1	1	1																																																																																																																														3
AACAT/ATGTT	8	2	1																																																																																																																														11
AAGAC/CTTGT	1																																																																																																																																1
AAGAG/CTCTT	2																																																																																																																																2
AAGAT/ATCTT	6			1																																																																																																																													7
AAGCC/CTTGG	1																																																																																																																																1
AAGGG/CCCTT	1	1																																																																																																																															2
AATAC/ATTGT	16	9			2	1																																																																																																																											28
AATAG/ATTCT	10		1	1																																																																																																																													12
AATAT/ATATT	1115	248	84	39	17	14	3	5	7	3	3	2	4	3	4					1																																																																																																													1552
AATCT/AGATT	1																																																																																																																																1
AATGG/ATTCC	3																																																																																																																																3
AATGT/ACATT	3																																																																																																																																3
AATTC/AATTG	1	3	3																																																																																																																														7
ACACC/GGTGT	4																																																																																																																																4
ACATC/ATGTG	10																																																																																																																																10
ACTAT/AGTAT	2	2																																																																																																																															4
AGATG/ATCTC		1																																																																																																																															1
ATATC/ATATG	13	2	7	2					1																																																																																																																								25
AAAAAC/GTTTTT	24	10	5	4	2		2																																																																																																																										47
AAAAAG/CTTTTT	165	53	18	5					1	1			1																																																																																																																				244
AAAAAT/ATTTTT	402	100	22	5		1																																																																																																																											530
AAAACG/CGTTTT		1																																																																																																																															1
AAAAGG/CCTTTT	18	7	4		1																																																																																																																												30
AAAAGT/ACTTTT	6	2																																																																																																																															8
AAAATC/ATTTTG	6																																																																																																																																6
AAAATG/ATTTTC	20	17	3	1																																																																																																																													41
AAAATT/AATTTT	32	2																																																																																																																															34
AAACAC/GTGTTT	1	9	1																																																																																																																														11
AAACAG/CTGTTT	3																																																																																																																																3
AAACAT/ATGTTT	30	8	7	5	2																																																																																																																												52
AAACGG/CCGTTT		1																																																																																																																															1
AAAGAC/CTTTGT	3																																																																																																																																3
AAAGAG/CTCTTT	8	4	1																																																																																																																														13
AAAGAT/ATCTTT	22	2	1		1																																																																																																																												26
AAAGGG/CCCTTT		1																																																																																																																															1
AAAGGT/ACCTTT	2	1																																																																																																																															3
AAAGTT/AACTTT	1																																																																																																																																1
AAATAC/ATTTGT	13	2									1																																																																																																																						16
AAATAG/ATTTCT	4	1				1																																																																																																																											6
AAATAT/ATATTT	483	95	20	5	3	2	1				2																																																																																																																						611
AAATGC/ATTTGC	3	1																																																																																																																															4
AAATGG/ATTTCC	4		2													1		1																																																																																																															8
AAATGT/ACATTT	9	6																																																																																																																															15
AAATTG/AATTTC		2																																																																																																																															2
AAATTT/AAATTT	5	1																																																																																																																															6
AACAAG/CTTGTT	4	2																																																																																																																															6
AACAAT/ATTGTT	19	9	1	2	1			1																																																																																																																									33
AACACC/GGTGTT	2																																																																																																																																2
AACACG/CGTGTT	1																																																																																																																																1
AACACT/AGTGTT		1																																																																																																																															1
AACAGC/CTGTTG	1																																																																																																																																1
AACATC/ATGTTG	6	1																																																																																																																															7
AACATG/ATGTTC	7	1	1		1																																																																																																																												10
AACATT/AATGTT	7																																																																																																																																7
AACCAT/ATGGTT	1																																																																																																																																1
AACCTG/AGGTTC				1																																																																																																																													1
AACGAT/ATCGTT	1			2																																																																																																																													3
AACGTC/ACGTTG	1																																																																																																																																1
AACTAG/AGTTCT	1																																																																																																																																1
AACTAT/AGTTAT	1																																																																																																																																1
AACTGC/AGTTGC	1																																																																																																																																1
AAGAAT/ATTCTT	9	2																																																																																																																															11
AAGACC/CTTGGT	1																																																																																																																																1
AAGACG/CGTCTT	2																																																																																																																																2
AAGAGC/CTCTTG	3	1																																																																																																																															4
AAGAGG/CCTCTT	4	1	1																																																																																																																														6
AAGATC/ATCTTG	2																																																																																																																																2
AAGATG/ATCTTC	13	2		1																																																																																																																													16
AAGGAC/CCTTGT	1																																																																																																																																1
AAGGAG/CCTTCT	2	3																																																																																																																															5
AAGGAT/ATCCTT	3		1																																																																																																																														4
AAGGGG/CCCCTT	1																																																																																																																																1
AAGGTC/ACCTTG					1																																																																																																																												1
AAGGTG/ACCTTC	3	1																																																																																																																															4
AAGTAG/ACTTCT	1																																																																																																																																1
AATACC/ATTGGT	1																																																																																																																																1
AATACT/AGTATT	2																																																																																																																																2
AATAGG/ATTCCT	1																																																																																																																																1
AATAGT/ACTATT	27	12	5	1																																																																																																																													45
AATATG/ATATTC	3	3																																																																																																																															6
AATATT/AATATT	13	1																																																																																																																															14
AATCAG/ATTCTG			1																																																																																																																														1
AATCAT/ATGATT	1	2																																																																																																																															3
AATCTG/AGATTC	1																																																																																																																																1
AATGAC/ATTGTC		1																																																																																																																															1
AATGAT/ATCATT	45	7	1	3		1																																																																																																																											57
AATGCT/AGCATT		1																																																																																																																															1
AATGGT/ACCATT	5	1	1																																																																																																																														7
AATGTC/ACATTG	1			1																																																																																																																													2
AATTAC/AATTGT	1	1	2																																																																																																																														4
AATTAG/AATTCT	1																																																																																																																																1
AATTAT/AATTAT	25	10	1																																																																																																																														36
ACACAT/ATGTGT	3	4								1																																																																																																																							8
ACAGAT/ATCTGT	1																																																																																																																																1
ACATAT/ATATGT	41	7	1	3		1																																																																																																																											53
ACATGT/ACATGT	1																																																																																																																																1
ACCACT/AGTGGT	1																																																																																																																																1
ACCAGC/CTGGTG		1																																																																																																																															1
ACCATC/ATGGTG	2																																																																																																																																2
ACCATG/ATGGTC			1																																																																																																																														1
ACCTCC/AGGTGG	4																																																																																																																																4
ACGATG/ATCGTC	4	2		1		1																																																																																																																											8
ACTAGC/AGTGCT	1																																																																																																																																1
ACTATG/AGTCAT	1																																																																																																																																1
ACTCAG/AGTCTG		1																																																																																																																															1
AGAGAT/ATCTCT	2	1																																																																																																																															3
AGATAT/ATATCT	11	1	1																																																																																																																														13
AGATGC/ATCTGC	1																																																																																																																																1
AGGATG/ATCCTC	1																																																																																																																																1
ATATGC/ATATGC	2																																																																																																																																2
ATCATG/ATCATG	2		1																																																																																																																														3
ATCCCC/ATGGGG	1																																																																																																																																1
