Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-111/megassr/results/hub_GCA_019645075.1/fasta/hub_GCA_019645075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              49
Total size of examined sequences (bp):           4628046
Total number of identified SSRs:                 28
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	5		1			6
GC	-	-	-	1					1
CCG	-	-	2						2
CGC	-	-	1						1
CGG	-	-	1						1
GCA	-	-	1						1
GCC	-	-	1						1
GCG	-	-	2						2
GCT	-	-	1						1
TATT	-	1							1
AGGGA	1								1
CGCGG	1								1
GCGCA	1								1
GCGCG	1								1
GGCGC	1								1
CATAAA	1								1
CCATCA	1								1
CGACTT	1								1
CTGGCG	1								1
GCACAG	1								1
TGGTCG								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	6		1			7
AGC/CTG	-	-	2						2
CCG/CGG	-	-	7						7
AAAT/ATTT	-	1							1
AAGGG/CCCTT	1								1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	3								3
AAACAT/ATGTTT	1								1
AAGTCG/ACTTCG	1								1
ACAGGC/CCTGTG	1								1
ACCACG/CGTGGT								1	1
ACCATC/ATGGTG	1								1
AGCGCC/CGCTGG	1								1
