Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCA_019645025.1/fasta/hub_GCA_019645025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              49
Total size of examined sequences (bp):           4830948
Total number of identified SSRs:                 25
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	9
4	2
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	2				2
CGG	-	-	2					2
CTG	-	-			1			1
GCC	-	-	1					1
GCG	-	-	3					3
GCT	-	-	1					1
TGG	-	-	1					1
GCCA	-	1						1
TAAA	-	1						1
CGCGC	1							1
CGCTG	1							1
GCGCA	1							1
GGCGC	1							1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1
TCGGCA	1							1
TGGTCG							1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	5				5
ACC/GGT	-	-	1					1
AGC/CTG	-	-	1		1			2
CCG/CGG	-	-	6					6
AAAT/ATTT	-	1						1
AGCC/CTGG	-	1						1
AGCGC/CGCTG	2							2
CCGCG/CGCGG	2							2
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT							1	1
AGCGCC/CGCTGG	2							2
ATCGGC/ATGCCG	1							1
