Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-104/megassr/results/hub_GCA_019644455.1/fasta/hub_GCA_019644455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           5299250
Total number of identified SSRs:                 28
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	2
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CG	-	-	-	3						3
GC	-	-	-	2						2
CCG	-	-	1							1
CTG	-	-							1	1
GCC	-	-	2							2
GCG	-	-	1							1
GCT	-	-	1							1
GCCA	-	1								1
TGTT	-		1							1
AAAAT	1									1
CAGCG	1									1
CGCGC	2									2
CGCTG	1									1
GGCGC	1									1
AAGCCG	1									1
AAGGAA	1									1
ACCACG								1		1
ATTTGT			1							1
CGACTT	1									1
CTGGCG	1									1
GCCAGC	1									1
TTCTGC		1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	5						5
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	4							4
AAAC/GTTT	-		1							1
AGCC/CTGG	-	1								1
AAAAT/ATTTT	1									1
AGCGC/CGCTG	2									2
CCGCG/CGCGG	3									3
AAAAGG/CCTTTT	1									1
AAATAC/ATTTGT			1							1
AAGCAG/CTGCTT		1								1
AAGCCG/CGGCTT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT								1		1
AGCGCC/CGCTGG	2									2
