Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-103/megassr/results/hub_GCA_019644435.1/fasta/hub_GCA_019644435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              74
Total size of examined sequences (bp):           4862634
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	1
5	4
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CG	-	-	-	3						3
GC	-	-	-	2						2
CCG	-	-	1							1
CTG	-	-							1	1
GCC	-	-	2							2
GCG	-	-	1							1
GCT	-	-	1							1
GCCA	-	1								1
CAGCG	1									1
CGCGC	2									2
GCGCC	1									1
AAGCCG	1									1
ACCACG								1		1
ATTTGT			1							1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	5						5
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	4							4
AGCC/CTGG	-	1								1
AGCGC/CGCTG	1									1
CCGCG/CGCGG	3									3
AAATAC/ATTTGT			1							1
AAGCCG/CGGCTT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT								1		1
AGCGCC/CGCTGG	2									2
