Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCA_019644415.1/fasta/hub_GCA_019644415.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              47
Total size of examined sequences (bp):           4873346
Total number of identified SSRs:                 24
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT	-	-	-	1										1
CG	-	-	-	2										2
GC	-	-	-	2										2
AGC	-	-	1											1
CCG	-	-	1											1
CGG	-	-	1											1
CTG	-	-	1										1	2
GCC	-	-	1											1
GCG	-	-	1											1
ATAAA	1													1
CGCGC	1													1
GGCGC	1													1
TGCGC	1													1
AAATAC	1													1
ACTAAC		1												1
CACGAC	1													1
CATGAC							1							1
CGACTT	1													1
CTGGCG	1													1
GCTGGC	1													1
TTGTTC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
AT/AT	-	-	-	1										1
CG/CG	-	-	-	4										4
AGC/CTG	-	-	2										1	3
CCG/CGG	-	-	4											4
AAAAT/ATTTT	1													1
AGCGC/CGCTG	1													1
CCGCG/CGCGG	2													2
AAATAC/ATTTGT	1													1
AACAAG/CTTGTT	1													1
AACACT/AGTGTT		1												1
AAGTCG/ACTTCG	1													1
ACCACG/CGTGGT	1													1
ACCATG/ATGGTC							1							1
AGCGCC/CGCTGG	2													2
