Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-32/megassr/results/hub_GCA_019515745.1/fasta/hub_GCA_019515745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           4624430
Total number of identified SSRs:                 34
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	11
4	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
CG	-	-	-	4		1	5
GC	-	-	-	2			2
AGC	-	-	1				1
CCG	-	-	2				2
CGG	-	-	1				1
GCA	-	-			1		1
GCC	-	-	1				1
GCG	-	-	3	1			4
GCT	-	-	1				1
TGGC	-	1					1
AAAAT	1						1
CGCCG	1						1
CGCGG	1						1
GGCGC	1						1
ACCAGC	1						1
ATGAAT	1						1
CACGAC		1					1
CCGGAG	1						1
CCGTCG	1						1
CGACCA					1		1
CGACTT	1						1
CTGGCG	1						1
GCTGGC	1						1
GTAGTT		1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	6		1	7
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	7	1			8
AGCC/CTGG	-	1					1
AAAAT/ATTTT	1						1
CCGCG/CGCGG	3						3
AACTAC/AGTTGT		1					1
AAGTCG/ACTTCG	1						1
AATATG/ATATTC	1						1
ACCACG/CGTGGT		1			1		2
ACCAGC/CTGGTG	1						1
ACGGCG/CCGTCG	1						1
AGCCGG/CCGGCT	1						1
AGCGCC/CGCTGG	2						2
