Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-26/megassr/results/hub_GCA_019515565.1/fasta/hub_GCA_019515565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              70
Total size of examined sequences (bp):           4624690
Total number of identified SSRs:                 24
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3		1	4
GC	-	-	-	2			2
AGC	-	-	1				1
CAG	-	-	1				1
CCG	-	-	1				1
GCA	-	-			1		1
GCG	-	-	2				2
TAA	-	-	1				1
TGG	-	-	1				1
TGGC	-	1					1
GCGCA	1						1
GCGCG	1						1
GGCGC	1						1
ATGGTC			1				1
CGACTT	1						1
CTGGCG	1						1
GCCAGC	1						1
GTCATT	1						1
GTGGTC			1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5		1	6
AAT/ATT	-	-	1				1
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	3				3
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGTCG/ACTTCG	1						1
AATGAC/ATTGTC	1						1
ACCACG/CGTGGT			1				1
ACCATG/ATGGTC			1				1
AGCGCC/CGCTGG	2						2
