Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-11/megassr/results/hub_GCA_019515065.1/fasta/hub_GCA_019515065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              74
Total size of examined sequences (bp):           4799636
Total number of identified SSRs:                 25
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	4							4
GC	-	-	-	2							2
CCG	-	-		1							1
CGC	-	-	2								2
CGG	-	-	2								2
CTG	-	-								1	1
GCG	-	-	1								1
GCT	-	-	2								2
GCCA	-	1									1
CAGCG	1										1
CGCGC	1										1
GGCGC	1										1
ACCACG				1							1
ACCATG				1							1
CGACTT	1										1
CGCCAG	1										1
GCCAGC	1										1
TTGACC							1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	6							6
AGC/CTG	-	-	2							1	3
CCG/CGG	-	-	5	1							6
AGCC/CTGG	-	1									1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AAGGTC/ACCTTG							1				1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT				1							1
ACCATG/ATGGTC				1							1
AGCGCC/CGCTGG	2										2
