Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-8/megassr/results/hub_GCA_019514895.1/fasta/hub_GCA_019514895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              64
Total size of examined sequences (bp):           4752213
Total number of identified SSRs:                 27
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-	1							1
CG	-	-	-	3							3
GC	-	-	-	2							2
AGC	-	-	1								1
CAC	-	-	1								1
CCA	-	-	1								1
CCG	-	-	3								3
CGC	-	-	1								1
CGG	-	-	1								1
CATT	-	1									1
GCCA	-	1									1
CAGCG	1										1
CCAGA	1										1
GCGCC	1										1
GCGCG	1										1
CACGAC										1	1
CGCCAG	1										1
GAAGTC	1										1
GCTCCG		1									1
GCTGGC	1										1
TGGTTG	1										1
TTTTTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5							5
ACC/GGT	-	-	2								2
AGC/CTG	-	-	1								1
CCG/CGG	-	-	5								5
AATG/ATTC	-	1									1
AGCC/CTGG	-	1									1
ACCAG/CTGGT	1										1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AAAAAT/ATTTTT	1										1
AACCAC/GGTTGT	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT										1	1
AGCCGG/CCGGCT		1									1
AGCGCC/CGCTGG	2										2
