Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_019514865.1/fasta/hub_GCA_019514865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              60
Total size of examined sequences (bp):           4750308
Total number of identified SSRs:                 27
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	8
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG	-	-	-	4																4
GC	-	-	-	1																1
TA	-	-	-	1																1
CAC	-	-	1																	1
CCA	-	-	1																	1
CCG	-	-	2																	2
CGC	-	-	1																	1
CGG	-	-	1																	1
GCG	-	-	1																	1
GCT	-	-	1																	1
GCCA	-	1																		1
CCAGA	1																			1
CGCGC	1																			1
CTGCG	1																			1
GCGCC	1																			1
CAACCA	1																			1
CACGAC										1										1
CCGGAG		1																		1
CTGGCG	1																			1
GAAGTC	1																			1
GCTGGC	1																			1
TAAAAA	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
AT/AT	-	-	-	1																1
CG/CG	-	-	-	5																5
ACC/GGT	-	-	2																	2
AGC/CTG	-	-	1																	1
CCG/CGG	-	-	5																	5
AGCC/CTGG	-	1																		1
ACCAG/CTGGT	1																			1
AGCGC/CGCTG	1																			1
CCGCG/CGCGG	2																			2
AAAAAT/ATTTTT	1																			1
AACCAC/GGTTGT	1																			1
AAGTCG/ACTTCG	1																			1
ACCACG/CGTGGT										1										1
AGCCGG/CCGGCT		1																		1
AGCGCC/CGCTGG	2																			2
