Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-6/megassr/results/hub_GCA_019514855.1/fasta/hub_GCA_019514855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           4803118
Total number of identified SSRs:                 27
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	10
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3						3
GC	-	-	-	2						2
AGC	-	-	1							1
CAG	-	-	1							1
CCG	-	-	3							3
GCC	-	-	1							1
GCG	-	-	1	1						2
TAA	-	-	1							1
TGG	-	-	1							1
AAAAT	1									1
CGCGG	1									1
GCGCG	1									1
GGCGC	1									1
ATGGTC									1	1
CCATCG	1									1
CGACTT	1									1
CGGCTT	1									1
CTGGCG	1									1
GCTGGC	1									1
TCGCTG	1									1
TGATGG	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5						5
AAT/ATT	-	-	1							1
ACC/GGT	-	-	1							1
AGC/CTG	-	-	2							2
CCG/CGG	-	-	5	1						6
AAAAT/ATTTT	1									1
CCGCG/CGCGG	3									3
AAGCCG/CGGCTT	1									1
AAGTCG/ACTTCG	1									1
ACAGCG/CGCTGT	1									1
ACCATC/ATGGTG	1									1
ACCATG/ATGGTC									1	1
AGCGCC/CGCTGG	2									2
ATCGCC/ATGGCG	1									1
