Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-5/megassr/results/hub_GCA_019514775.1/fasta/hub_GCA_019514775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              88
Total size of examined sequences (bp):           4797510
Total number of identified SSRs:                 22
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
4	1
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3		1	4
GC	-	-	-	2			2
AGC	-	-	1				1
CCG	-	-	1				1
CCT	-	-		1			1
GCC	-	-	1				1
GCG	-	-	2				2
TAAA	-	1					1
AAAAT	1						1
CGCGC	1						1
GCGCC	1						1
GCGCG	1						1
CTGGCG	1						1
GAAGTC	1						1
GCCGGT	1						1
GCTGGC	1						1
TGGTCG				1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5		1	6
AGC/CTG	-	-	1				1
AGG/CCT	-	-		1			1
CCG/CGG	-	-	4				4
AAAT/ATTT	-	1					1
AAAAT/ATTTT	1						1
CCGCG/CGCGG	3						3
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT				1			1
ACCGGC/CCGGTG	1						1
AGCGCC/CGCTGG	2						2
