Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-75/megassr/results/hub_GCA_019386315.1/fasta/hub_GCA_019386315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           5331928
Total number of identified SSRs:                 29
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3						3
GC	-	-	-	2						2
TA	-	-	-	1						1
AGC	-	-	1							1
CCG	-	-	1							1
CGG	-	-	1							1
CTG	-	-					1			1
GCC	-	-	1							1
GCG	-	-	1							1
GGC	-	-	1							1
GCCA	-	1								1
TGTT	-		1							1
AAAAT	1									1
CAGCG	2									2
CGCGC	1									1
CGCTG	1									1
GGCGC	1									1
ACCACG					1					1
ATTTGT		1								1
CCAGTA									1	1
CGACTT	1									1
CGGCTT	1									1
CTGGCG	1									1
GCCAGC	1									1
GCCTGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
CG/CG	-	-	-	5						5
AGC/CTG	-	-	1				1			2
CCG/CGG	-	-	5							5
AAAC/GTTT	-		1							1
AGCC/CTGG	-	1								1
AAAAT/ATTTT	1									1
AGCGC/CGCTG	3									3
CCGCG/CGCGG	2									2
AAATAC/ATTTGT		1								1
AAGCCG/CGGCTT	1									1
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT					1					1
ACCAGT/ACTGGT									1	1
AGCGCC/CGCTGG	2									2
AGGCGC/CCTGCG	1									1
