Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-67/megassr/results/hub_GCA_019386015.1/fasta/hub_GCA_019386015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              49
Total size of examined sequences (bp):           4652986
Total number of identified SSRs:                 28
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	9
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	5		1				6
GC	-	-	-	1						1
CCG	-	-	2							2
CGC	-	-	1							1
CGG	-	-	1							1
GCA	-	-	1							1
GCC	-	-	1							1
GCG	-	-	2							2
GCT	-	-	1							1
TATT	-	1								1
AGGGA	1									1
CGCGC	1									1
GCGCA	1									1
GCGCG	1									1
GGCGC	1									1
CCATCA	1									1
CGACTT	1									1
CTGGCG	1									1
GCACAG	1									1
TGGTCG									1	1
TGTTTA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	6		1				7
AGC/CTG	-	-	2							2
CCG/CGG	-	-	7							7
AAAT/ATTT	-	1								1
AAGGG/CCCTT	1									1
AGCGC/CGCTG	1									1
CCGCG/CGCGG	3									3
AAACAT/ATGTTT	1									1
AAGTCG/ACTTCG	1									1
ACAGGC/CCTGTG	1									1
ACCACG/CGTGGT									1	1
ACCATC/ATGGTG	1									1
AGCGCC/CGCTGG	1									1
