Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-66/megassr/results/hub_GCA_019385995.1/fasta/hub_GCA_019385995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              45
Total size of examined sequences (bp):           4535635
Total number of identified SSRs:                 21
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
4	1
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	3								3
GC	-	-	-	1								1
CCG	-	-	1									1
CGC	-	-	1									1
CGG	-	-	1									1
GCC	-	-	1									1
GCT	-	-	1									1
CGCC	-	1										1
CGCGG	1											1
GCGCA	1											1
GCGCG	1											1
GGCGC	1											1
CAACAG	1											1
CACGAC											1	1
CGACTT	1											1
CTGGCG	1											1
GCCAGC	1											1
GGTGAT	1											1
TCAATC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	4								4
AGC/CTG	-	-	1									1
CCG/CGG	-	-	4									4
CCCG/CGGG	-	1										1
AGCGC/CGCTG	1											1
CCGCG/CGCGG	3											3
AACAGC/CTGTTG	1											1
AAGTCG/ACTTCG	1											1
AATCTC/AGATTG	1											1
ACCACG/CGTGGT											1	1
ACCATC/ATGGTG	1											1
AGCGCC/CGCTGG	2											2
