Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCA_019318385.1/fasta/hub_GCA_019318385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           5331562
Total number of identified SSRs:                 29
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
TA	-	-	-	1							1
AGC	-	-	1								1
CCG	-	-	1								1
CGG	-	-	1								1
CTG	-	-					1				1
GCC	-	-	1								1
GCG	-	-	1								1
GGC	-	-	1								1
GCCA	-	1									1
TGTT	-		1								1
AAAAT	1										1
CAGCG	3										3
CGCGC	1										1
GGCGC	1										1
ACCACG							1				1
ATTTGT		1									1
CCAGTA										1	1
CGACTT	1										1
CGGCTT	1										1
CTGGCG	1										1
GCCAGC	1										1
GCCTGC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	1							1
CG/CG	-	-	-	5							5
AGC/CTG	-	-	1				1				2
CCG/CGG	-	-	5								5
AAAC/GTTT	-		1								1
AGCC/CTGG	-	1									1
AAAAT/ATTTT	1										1
AGCGC/CGCTG	3										3
CCGCG/CGCGG	2										2
AAATAC/ATTTGT		1									1
AAGCCG/CGGCTT	1										1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT							1				1
ACCAGT/ACTGGT										1	1
AGCGCC/CGCTGG	2										2
AGGCGC/CCTGCG	1										1
