Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-42/megassr/results/hub_GCA_019318345.1/fasta/hub_GCA_019318345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           4663954
Total number of identified SSRs:                 22
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	6
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	5		5
GC	-	-	-	1		1
CGC	-	-	1			1
CGG	-	-	2			2
GCC	-	-	1			1
GCG	-	-	1			1
GCT	-	-	1			1
GCGCA	1					1
GCGCG	1					1
GGCGC	1					1
ACCGCC	1					1
CCATGA					1	1
CGACTT	1					1
CTGCGG		1				1
CTGGCG	1					1
CTGTTG	1					1
GCGGCT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	6		6
AGC/CTG	-	-	1			1
CCG/CGG	-	-	5			5
AGCGC/CGCTG	1					1
CCGCG/CGCGG	2					2
AACAGC/CTGTTG	1					1
AAGTCG/ACTTCG	1					1
ACCATG/ATGGTC					1	1
ACCGCC/CGGTGG	1					1
AGCCGC/CGGCTG	1	1				2
AGCGCC/CGCTGG	1					1
