Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCA_019318105.1/fasta/hub_GCA_019318105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              83
Total size of examined sequences (bp):           4917285
Total number of identified SSRs:                 23
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	4							4
GC	-	-	-	1							1
CCG	-	-			1						1
CGC	-	-	1								1
CGG	-	-	1								1
GCA	-	-								1	1
GCG	-	-	1								1
GCT	-	-	1								1
GCCA	-	1									1
GCGCA	1										1
GCGCG	1										1
GGCGC	1										1
ACCGCC	1										1
CGACTT	1										1
CTGGCG	1										1
GACCAT					1						1
GCCAGC	1										1
GCGGAG	1										1
TCTTCC		1									1
TTGCCC								1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	5							5
AGC/CTG	-	-	1							1	2
CCG/CGG	-	-	3		1						4
AGCC/CTGG	-	1									1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AAGAGG/CCTCTT		1									1
AAGGGC/CCCTTG								1			1
AAGTCG/ACTTCG	1										1
ACCATG/ATGGTC					1						1
ACCGCC/CGGTGG	1										1
AGCGCC/CGCTGG	2										2
AGGCGG/CCGCCT	1										1
