Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_019318065.1/fasta/hub_GCA_019318065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           4843427
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	9
4	1
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	3				3
GC	-	-	-	2				2
TA	-	-	-	1				1
CCG	-	-	1					1
CTG	-	-					1	1
GCC	-	-	1					1
GCG	-	-	2					2
GCT	-	-	2					2
GGT	-	-	1					1
TGG	-	-	1					1
GCCA	-	1						1
CGCGC	1							1
GGCGC	1							1
AGCCAG	1							1
CAACCA	1							1
CCAGAA		1						1
CCGGAG		1						1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1
TAAAAA	1							1
TGGTCG						1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	1				1
CG/CG	-	-	-	5				5
ACC/GGT	-	-	2					2
AGC/CTG	-	-	2				1	3
CCG/CGG	-	-	4					4
AGCC/CTGG	-	1						1
CCGCG/CGCGG	2							2
AAAAAT/ATTTTT	1							1
AACCAC/GGTTGT	1							1
AACCAG/CTGGTT		1						1
AAGTCG/ACTTCG	1							1
ACCACG/CGTGGT						1		1
AGAGCC/CTCTGG	1							1
AGCCGG/CCGGCT		1						1
AGCGCC/CGCTGG	2							2
