Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-20/megassr/results/hub_GCA_019298295.1/fasta/hub_GCA_019298295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              107
Total size of examined sequences (bp):           5334822
Total number of identified SSRs:                 27
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT	-	-	-	1												1
CG	-	-	-	4												4
GC	-	-	-	1												1
CCG	-	-	1													1
CGG	-	-	2													2
CTG	-	-									1					1
GCC	-	-	1													1
GCG	-	-	1													1
GCT	-	-	1													1
GCCA	-	1														1
TGTT	-				1											1
CAGCG	1															1
CGCGC	1															1
CGCTG	1															1
GGCGC	1															1
AAGGAA	1															1
ACAGAA															1	1
ATTTGT			1													1
CGACTT	1															1
CGGCTT	1															1
CTGGCG	1															1
GCAGAA			1													1
GCCAGC	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AT/AT	-	-	-	1												1
CG/CG	-	-	-	5												5
AGC/CTG	-	-	1								1					2
CCG/CGG	-	-	5													5
AAAC/GTTT	-				1											1
AGCC/CTGG	-	1														1
AGCGC/CGCTG	2															2
CCGCG/CGCGG	2															2
AAAAGG/CCTTTT	1															1
AAACAG/CTGTTT															1	1
AAATAC/ATTTGT			1													1
AAGCAG/CTGCTT			1													1
AAGCCG/CGGCTT	1															1
AAGTCG/ACTTCG	1															1
AGCGCC/CGCTGG	2															2
