Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_019298255.1/fasta/hub_GCA_019298255.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              109
Total size of examined sequences (bp):           5410424
Total number of identified SSRs:                 26
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AT	-	-	-	1								1
CG	-	-	-	3								3
GC	-	-	-	2								2
CCG	-	-	1									1
CGG	-	-	2									2
CTG	-	-									1	1
GCC	-	-	1									1
GCG	-	-	1									1
GCT	-	-	1									1
GCCA	-	1										1
TGTT	-				1							1
CAGCG	1											1
CGCGC	1											1
CGCTG	1											1
GCGCC	1											1
AAGGAA	1											1
ATTTGT			1									1
CGGCTT	1											1
CTGGCG	1											1
GAAGTC	1											1
GCCAGC	1											1
TTCTGC		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AT/AT	-	-	-	1								1
CG/CG	-	-	-	5								5
AGC/CTG	-	-	1								1	2
CCG/CGG	-	-	5									5
AAAC/GTTT	-				1							1
AGCC/CTGG	-	1										1
AGCGC/CGCTG	2											2
CCGCG/CGCGG	2											2
AAAAGG/CCTTTT	1											1
AAATAC/ATTTGT			1									1
AAGCAG/CTGCTT		1										1
AAGCCG/CGGCTT	1											1
AAGTCG/ACTTCG	1											1
AGCGCC/CGCTGG	2											2
