Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCA_019145135.1/fasta/hub_GCA_019145135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53
Total size of examined sequences (bp):           4710878
Total number of identified SSRs:                 22
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3		1	4
GC	-	-	-	1			1
CCG	-	-	1				1
CGC	-	-	1				1
CGG	-	-	1				1
GCG	-	-	1				1
GCT	-	-	1				1
GGC	-	-	1				1
CGCGG	1						1
GCGCG	1						1
GGCGC	1						1
CACGAC						1	1
CAGCGC	1						1
CATAAA	1						1
CGACTT	1						1
CTGGCG	1						1
TCATCG	1						1
TGGTAC		1					1
TGTATT		1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4		1	5
AGC/CTG	-	-	1				1
CCG/CGG	-	-	5				5
CCGCG/CGCGG	3						3
AAACAT/ATGTTT	1						1
AAATAC/ATTTGT		1					1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT						1	1
ACCAGT/ACTGGT		1					1
ACGATG/ATCGTC	1						1
AGCGCC/CGCTGG	2						2
