Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCA_019145115.1/fasta/hub_GCA_019145115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              75
Total size of examined sequences (bp):           4987932
Total number of identified SSRs:                 24
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	3					3
GC	-	-	-	2					2
CCG	-	-			1				1
CGC	-	-	1						1
CGG	-	-	1						1
GCA	-	-						1	1
GCG	-	-	1						1
GCT	-	-	1						1
GCCA	-	1							1
GCGCA	1								1
GCGCG	1								1
GGCGC	1								1
ACCGCC	1								1
CGACTT	1								1
CTGGCG	1								1
GACCAT			1						1
GCCAGC	1								1
GCGGAG	1								1
TCCTGT			1						1
TCTTCC		1							1
TTGCCC			1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	5					5
AGC/CTG	-	-	1					1	2
CCG/CGG	-	-	3		1				4
AGCC/CTGG	-	1							1
AGCGC/CGCTG	1								1
CCGCG/CGCGG	2								2
AACAGG/CCTGTT			1						1
AAGAGG/CCTCTT		1							1
AAGGGC/CCCTTG			1						1
AAGTCG/ACTTCG	1								1
ACCATG/ATGGTC			1						1
ACCGCC/CGGTGG	1								1
AGCGCC/CGCTGG	2								2
AGGCGG/CCGCCT	1								1
