Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-139/megassr/results/hub_GCA_019145035.1/fasta/hub_GCA_019145035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              28
Total size of examined sequences (bp):           4807811
Total number of identified SSRs:                 20
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	3						3
GC	-	-	-	2			1			3
CGG	-	-	1	1						2
CTG	-	-					1			1
GCC	-	-	1							1
GCG	-	-	2							2
GCT	-	-	1							1
CGCGC	2									2
GCGCC	1									1
CTGGCG	1									1
GAAGTC	1									1
GCCAGC	1									1
TGGTCG									1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	5			1			6
AGC/CTG	-	-	1				1			2
CCG/CGG	-	-	4	1						5
CCGCG/CGCGG	3									3
AAGTCG/ACTTCG	1									1
ACCACG/CGTGGT									1	1
AGCGCC/CGCTGG	2									2
