Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCA_019144715.1/fasta/hub_GCA_019144715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           4848349
Total number of identified SSRs:                 23
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	1
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	2		1				3
GC	-	-	-	2						2
AGC	-	-	1							1
CCG	-	-	1							1
CGC	-	-	1							1
CGG	-	-	1							1
CTG	-	-							1	1
GCC	-	-	1							1
GCG	-	-	1							1
GCCA	-	1								1
CAGCG	1									1
CGCGC	1									1
CGCTG	1									1
GCGCA	1									1
GCGCC	1									1
CTGGCG	1									1
GAAGTC	1									1
GACCAT			1							1
GCCAGC	1									1
GGAAGC			1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG/CG	-	-	-	4		1				5
AGC/CTG	-	-	1						1	2
CCG/CGG	-	-	5							5
AGCC/CTGG	-	1								1
AGCGC/CGCTG	3									3
CCGCG/CGCGG	2									2
AAGCGG/CCGCTT			1							1
AAGTCG/ACTTCG	1									1
ACCATG/ATGGTC			1							1
AGCGCC/CGCTGG	2									2
