Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018246035.1/fasta/hub_GCA_018246035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53750
Total size of examined sequences (bp):           16269988
Total number of identified SSRs:                 4152
Number of SSR containing sequences:              3681
Number of sequences containing more than 1 SSR:  375
Number of SSRs present in compound formation:    327


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	370
2	1036
3	754
4	1023
5	770
6	199

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	26	14	15	9	9	9	11	5	3	4	2	3	4	3		1	1	2			4	1		1	2	2	1				2		1			1			1		2			1	1				1	2		1			1	1	3	1																	1	152
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1	1	2																																																				1																			8
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1		2	1				1	1		1									1	1										1								1																																				13
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	18	19	16	15	10	13	9	10	8	8	2	3	4	4		2	2	3	1	3	2	3	4		1	1		1	1	1	3	2	4	1	2	1				2	1	1				2	2	1	3		1					1	3	3																		197
AC	-	-	-	32	15	11	2	4	2	3	1	2	1			1							1																																																																						75
AG	-	-	-	11	8	6	7	2	1																																																																																				35
AT	-	-	-	111	48	32	31	17	14	8	9	3	3	3	4	4	1	2																																																																											290
CA	-	-	-	20	9	8	7	1	2	1	1	2			1					1	1																																																																								54
CG	-	-	-	2																																																																																									2
CT	-	-	-	17	5	5	1		1																																																																																				29
GA	-	-	-	6	5	7	2	1			1																																																																																		22
GC	-	-	-	3	1																																																																																								4
GT	-	-	-	24	12	8	8	4	4	1	1	2				1			1			1																																																																							67
TA	-	-	-	110	53	33	18	20	15	8	7	4	5	7	1	1	1	1	2																																																																										286
TC	-	-	-	13	12	12	3	3		1					1																																																																														45
TG	-	-	-	50	26	13	14	4	4	4	1	1	1		1			2		1			3	1		1																																																																			127
AAG	-	-	4	2																																																																																									6
AAT	-	-	69	20	13	3	1																																																																																						106
ACA	-	-			1	1																																																																																							2
ACT	-	-	3																																																																																										3
AGA	-	-	5																																																																																										5
AGT	-	-	1																																																																																										1
ATA	-	-	51	40	18	3	2																																																																																						114
ATC	-	-	11	2	2																																																																																								15
ATG	-	-	10	1	1																																																																																								12
ATT	-	-	37	23	8	1		1	1																																																																																				71
CAA	-	-	4		1																																																																																								5
CAC	-	-	3																																																																																										3
CAG	-	-		1																																																																																									1
CAT	-	-	3	1	1																																																																																								5
CCA	-	-	1																																																																																										1
CCT	-	-		1																																																																																									1
CGC	-	-	1																																																																																										1
CTA	-	-		1			1																																																																																						2
CTG	-	-	1																																																																																										1
CTT	-	-		1																																																																																									1
GAA	-	-	1		1																																																																																								2
GAC	-	-	1																																																																																										1
GAT	-	-	4			1																																																																																							5
GCA	-	-	1																																																																																										1
GCC	-	-	1																																																																																										1
GCT	-	-	1																																																																																										1
GGT	-	-	2	1																																																																																									3
GTA	-	-	1																																																																																										1
GTG	-	-	4																																																																																										4
GTT	-	-	1																																																																																										1
TAA	-	-	37	15	9			1																																																																																					62
TAC	-	-	3	2	2	1																																																																																							8
TAG	-	-	5	1																																																																																									6
TAT	-	-	64	18	14	5																																																																																							101
TCA	-	-	12																																																																																										12
TCC	-	-	1																																																																																										1
TCG	-	-	1																																																																																										1
TCT	-	-	2																																																																																										2
TGA	-	-	14	2	1																																																																																								17
TGC	-	-		2																																																																																									2
TGG	-	-	3																																																																																										3
TGT	-	-	3																																																																																										3
TTA	-	-	76	47	13	6	5	1																																																																																					148
TTC	-	-	3	3	1			1																																																																																					8
TTG	-	-	2	2																																																																																									4
AAAC	-	1																																																																																											1
AAAG	-	2	3	2																																																																																									7
AAAT	-	34	9				1																																																																																						44
AACA	-	1	1																																																																																										2
AACG	-	1																																																																																											1
AAGA	-	7	2																																																																																										9
AAGG	-	3																																																																																											3
AAGT	-	2		1																																																																																									3
AATA	-	52	15	9	3	1		1																																																																																					81
AATG	-	1																																																																																											1
AATT	-	5																																																																																											5
ACAA	-		2																																																																																										2
ACAG	-	8																																																																																											8
ACAT	-	2																																																																																											2
ACGA	-	1																																																																																											1
ACGC	-	1																																																																																											1
ACTA	-		1																																																																																										1
ACTC	-		1																																																																																										1
ACTT	-	4																																																																																											4
AGAA	-	10	4	3																																																																																									17
AGAC	-	3	1																																																																																										4
AGAT	-	4	1	1																																																																																									6
AGCA	-	1																																																																																											1
AGGC	-	1																																																																																											1
AGGT	-	1																																																																																											1
AGTG	-		1																																																																																										1
AGTT	-	1																																																																																											1
ATAA	-	92	21	3	1																																																																																								117
ATAC	-	3	2			1																																																																																							6
ATAG	-	1	2																																																																																										3
ATCT	-	1	1																																																																																										2
ATGA	-		1																																																																																										1
ATGG	-		1																																																																																										1
ATGT	-	2																																																																																											2
ATTA	-	6																																																																																											6
ATTC	-	4																																																																																											4
ATTG	-	2																																																																																											2
ATTT	-	26	6	2	1																																																																																								35
CAAA	-	2	1																																																																																										3
CACG	-	1	2			1																																																																																							4
CAGT	-	1																																																																																											1
CATA	-	1	1																																																																																										2
CCTT	-	2																																																																																											2
CGAC	-	1																																																																																											1
CGCA	-	1																																																																																											1
CGTT	-	1																																																																																											1
CTGA	-	1																																																																																											1
CTGT	-	1																																																																																											1
CTTA	-	2																																																																																											2
CTTC	-		1																																																																																										1
CTTT	-	4																																																																																											4
GAAA	-	4	1		1																																																																																								6
GAAT	-	1																																																																																											1
GACA	-	1		1																																																																																									2
GATA	-	1																																																																																											1
GCAT	-	1																																																																																											1
GCGA	-			1																																																																																									1
GCTA	-		1																																																																																										1
GCTT	-	1																																																																																											1
GGAA	-	1																																																																																											1
GGTA	-	2																																																																																											2
GGTT	-		1																																																																																										1
GTAA	-	3																																																																																											3
GTAG	-	2	1				1																																																																																						4
GTAT	-	2		1																																																																																									3
GTCT	-	2																																																																																											2
GTGA	-	1																																																																																											1
GTGC	-	4																																																																																											4
GTTT	-	1																																																																																											1
TAAA	-	52	21	3	1	1																																																																																							78
TAAG	-	8																																																																																											8
TAAT	-	1	1																																																																																										2
TACA	-	6				1																																																																																							7
TACC	-	1																																																																																											1
TACG	-		1																																																																																										1
TACT	-	3	2																																																																																										5
TAGA	-	8	2																																																																																										10
TAGG	-	1																																																																																											1
TATC	-	13	2	1																																																																																									16
TATG	-	8	2																																																																																										10
TATT	-	59	18	5																																																																																									82
TCAA	-	2																																																																																											2
TCAT	-	1	1																																																																																										2
TCCA	-	1																																																																																											1
TCCT	-	1																																																																																											1
TCTA	-		2	1	1	1																																																																																							5
TCTG	-	2																																																																																											2
TCTT	-	4																																																																																											4
TGAA	-	3																																																																																											3
TGAC	-	2																																																																																											2
TGCG	-	1			1																																																																																								2
TGCT	-	3																																																																																											3
TGTA	-	5																																																																																											5
TGTC	-	8		1						2																																																																																			11
TGTT	-	3																																																																																											3
TTAA	-	9																																																																																											9
TTAC	-		1																																																																																										1
TTAG	-					1																																																																																							1
TTAT	-	58	17	2	2	1																																																																																							80
TTCA	-	2	4																																																																																										6
TTCG	-	1																																																																																											1
TTCT	-	8	1																																																																																										9
TTGA	-	1																																																																																											1
TTGT	-	3	1																																																																																										4
TTTA	-	111	18	8	3																																																																																								140
TTTC	-	29	8	4		2	1		1																																																																																				45
TTTG	-	7	4																																																																																										11
AAAAC	4	1																																																																																											5
AAAAG	1																																																																																												1
AAAAT	10																																																																																												10
AAACA	1																																																																																												1
AAACT	2																																																																																												2
AAAGG	1																																																																																												1
AAATA	27		1																																																																																										28
AAATC	1	2																																																																																											3
AAATG	1																																																																																												1
AAATT	18	2																																																																																											20
AACAA	2																																																																																												2
AACAT	4																																																																																												4
AACCT		1					1	1		1		1																																																																																	5
AACTT	1																																																																																												1
AAGAA		1																																																																																											1
AAGCT	1																																																																																												1
AAGTC	1																																																																																												1
AAGTG	2																																																																																												2
AATAA	22	5																																																																																											27
AATAC	2																																																																																												2
AATAG	1		1																																																																																										2
AATAT	5																																																																																												5
AATCA	2																																																																																												2
AATCG	1																																																																																												1
AATGG	2																																																																																												2
AATGT		1																																																																																											1
AATTA	5																																																																																												5
AATTC	2																																																																																												2
AATTT	7																																																																																												7
ACAAA	1																																																																																												1
ACAAG	1																																																																																												1
ACAAT	1	1																																																																																											2
ACATC	1																																																																																												1
ACCAG	1																																																																																												1
ACCAT	1																																																																																												1
ACCTA		1						2	1				1																																																																																5
ACGAC	1																																																																																												1
ACGCG	1																																																																																												1
ACGTA	1																																																																																												1
ACTAA	3																																																																																												3
ACTAC	1																																																																																												1
ACTAT	2																																																																																												2
ACTCT	1																																																																																												1
ACTGA	1																																																																																												1
ACTGT	1																																																																																												1
ACTTC	2																																																																																												2
AGAAA	1																																																																																												1
AGAAT	1																																																																																												1
AGACA	2		1																																																																																										3
AGACT	3																																																																																												3
AGAGA	1																																																																																												1
AGAGG	1																																																																																												1
AGCAA	1																																																																																												1
AGCAC	1																																																																																												1
AGCAT	1																																																																																												1
AGCCT	1																																																																																												1
AGCTG	1																																																																																												1
AGGAT	2																																																																																												2
AGGGA	1																																																																																												1
AGGGT	1	1																																																																																											2
AGGTT	1	2	1							1																																																																																			5
AGTAG	1																																																																																												1
AGTTC	1																																																																																												1
AGTTG	1																																																																																												1
AGTTT	2																																																																																												2
ATAAA	16																																																																																												16
ATAAG	1																																																																																												1
ATAAT	4																																																																																												4
ATACA	3	1																																																																																											4
ATATA	4																																																																																												4
ATATT	4																																																																																												4
ATCAA	1	1																																																																																											2
ATCAG	1																																																																																												1
ATCCA	1																																																																																												1
ATCCT	6																																																																																												6
ATCTA	1		1																																																																																										2
ATCTC	1																																																																																												1
ATCTG	1																																																																																												1
ATGCG	1																																																																																												1
ATGGT	1																																																																																												1
ATGTA	2																																																																																												2
ATGTG	1																																																																																												1
ATTAA	4																																																																																												4
ATTAC	1																																																																																												1
ATTAT	7																																																																																												7
ATTCA		1																																																																																											1
ATTCC				1																																																																																									1
ATTGG	1																																																																																												1
ATTGT	3																																																																																												3
ATTTA	5		1																																																																																										6
ATTTC	2																																																																																												2
ATTTG	1																																																																																												1
ATTTT	9																																																																																												9
CAAAA	2																																																																																												2
CAAAT	1																																																																																												1
CAAGC	1																																																																																												1
CAATG	2																																																																																												2
CACAA	1																																																																																												1
CACAT	1																																																																																												1
CACGC	1																																																																																												1
CACTA	1	1																																																																																											2
CAGCA	1																																																																																												1
CATAA	1																																																																																												1
CATAG	1																																																																																												1
CATAT	1																																																																																												1
CATGA	1																																																																																												1
CCACC	1																																																																																												1
CCATA	1																																																																																												1
CCCGT			1																																																																																										1
CCCTA	1																																																																																												1
CCCTT	1																																																																																												1
CCTAA	3	1				1		2	1	1	1		1																																																																																11
CCTAG	1																																																																																												1
CCTTA	1																																																																																												1
CCTTG	1																																																																																												1
CGAAG	1																																																																																												1
CGCTT	1																																																																																												1
CGGTA	1																																																																																												1
CGTAA	1																																																																																												1
CGTAC	1																																																																																												1
CGTGT	1																																																																																												1
CGTTA	1																																																																																												1
CTAAC	6	1		1																																																																																									8
CTATT	1																																																																																												1
CTCGG	2																																																																																												2
CTCTA	1																																																																																												1
CTCTC	1																																																																																												1
CTCTT	1																																																																																												1
CTGAA	1																																																																																												1
CTTAT	1																																																																																												1
CTTCA	2																																																																																												2
GAAAA	1																																																																																												1
GAACG	1																																																																																												1
GAACT		1																																																																																											1
GAAGT	1																																																																																												1
GAATA	1																																																																																												1
GAATG	1			1																																																																																									2
GACAC	1																																																																																												1
GACGC	1																																																																																												1
GAGGA	1																																																																																												1
GATAG	1																																																																																												1
GATCA	1																																																																																												1
GATGT	1																																																																																												1
GATTA	1																																																																																												1
GCCGA	1																																																																																												1
GCCTT		1																																																																																											1
GGAAT					1																																																																																								1
GGACG	1																																																																																												1
GGATG	1																																																																																												1
GGTGT	1																																																																																												1
GGTTA	2	5	1	1		1		2	2																																																																																				14
GTAAC		1																																																																																											1
GTAGT	1																																																																																												1
GTATG	2																																																																																												2
GTATT	2																																																																																												2
GTCGC	1																																																																																												1
GTCTA	3	1																																																																																											4
GTGCA	1																																																																																												1
GTGCG	1																																																																																												1
GTGTC	1																																																																																												1
GTGTT	2																																																																																												2
GTTAG	2	1	2	1	1	2	1		1			1																																																																																	12
GTTCT	1																																																																																												1
GTTGC	1																																																																																												1
GTTTA		1																																																																																											1
GTTTT	1																																																																																												1
TAAAA	12	1																																																																																											13
TAAAC	1																																																																																												1
TAAAT	3	1	1																																																																																										5
TAACA	1																																																																																												1
TAACC	3	1	1																																																																																										5
TAAGT	1																																																																																												1
TAATA	4	2																																																																																											6
TAATC	2																																																																																												2
TAATT	4																																																																																												4
TACAA	6	3																																																																																											9
TACCC	1																																																																																												1
TACGG	1																																																																																												1
TAGAA	2	1																																																																																											3
TAGAC	1																																																																																												1
TAGAT	1																																																																																												1
TAGGT	3		1										1																																																																																5
TAGTC	2																																																																																												2
TAGTG	4																																																																																												4
TATAA	3																																																																																												3
TATAC	1																																																																																												1
TATAG	1																																																																																												1
TATAT	5																																																																																												5
TATGA	1																																																																																												1
TATGG	1																																																																																												1
TATGT	2																																																																																												2
TATTA	6																																																																																												6
TATTC	3	2																																																																																											5
TATTG	6	2																																																																																											8
TATTT	17																																																																																												17
TCAAA	1																																																																																												1
TCAAG	1																																																																																												1
TCAGA	1																																																																																												1
TCAGG	1																																																																																												1
TCCAA	2																																																																																												2
TCCTA	1																																																																																												1
TCCTT	1																																																																																												1
TCGTT	1																																																																																												1
TCTCC	1																																																																																												1
TCTCT	1																																																																																												1
TCTTG	2																																																																																												2
TCTTT	1																																																																																												1
TGAAA	1	1																																																																																											2
TGAAG	1																																																																																												1
TGACA	1																																																																																												1
TGAGA	1																																																																																												1
TGATC	2																																																																																												2
TGATG	2																																																																																												2
TGATT	1																																																																																												1
TGCCG	2																																																																																												2
TGCGC	1																																																																																												1
TGTAA	3																																																																																												3
TGTAG	1																																																																																												1
TGTAT	4	1																																																																																											5
TGTCA	1																																																																																												1
TGTCT		1																																																																																											1
TGTGA	2																																																																																												2
TGTGT	2																																																																																												2
TGTTA	1																																																																																												1
TGTTT	2																																																																																												2
TTAAA	4																																																																																												4
TTAAC	1																																																																																												1
TTAAG		1																																																																																											1
TTAAT	7																																																																																												7
TTAGG	4				1						1	1																																																																																	7
TTATA	6																																																																																												6
TTATC	2																																																																																												2
TTATT	16																																																																																												16
TTCAT	2																																																																																												2
TTCGA	1																																																																																												1
TTCGG	1																																																																																												1
TTCTA	1																																																																																												1
TTCTT	2	1																																																																																											3
TTGAA	1																																																																																												1
TTGAT	1																																																																																												1
TTGGA	1																																																																																												1
TTGGC		1																																																																																											1
TTGTA	16	5	1																																																																																										22
TTGTC		1																																																																																											1
TTGTG	3																																																																																												3
TTGTT	1																																																																																												1
TTTAA	8	1																																																																																											9
TTTAC	4	1																																																																																											5
TTTAG	4																																																																																												4
TTTAT	28	1	2																																																																																										31
TTTCA	1																																																																																												1
TTTCT	3																																																																																												3
TTTGA	7																																																																																												7
TTTGG	1																																																																																												1
TTTGT	4																																																																																												4
TTTTA	40	1		1																																																																																									42
TTTTC	5																																																																																												5
AAAAAT	1	1																																																																																											2
AAAATT	1																																																																																												1
AAAGAT	1																																																																																												1
AAATAA	4																																																																																												4
AAATTC	3																																																																																												3
AACCGG	1																																																																																												1
AAGAAA	1																																																																																												1
AAGACA	1	1																																																																																											2
AAGACC	1																																																																																												1
AAGTAA	1																																																																																												1
AATAAA	3																																																																																												3
AATACT	1																																																																																												1
AATATA	1																																																																																												1
AATTCA	4																																																																																												4
AATTGT	1																																																																																												1
AATTTG			1																																																																																										1
ACATAT	1																																																																																												1
ACCGTC	1																																																																																												1
ACCTTG	1																																																																																												1
ACTTAT	1																																																																																												1
AGAAAA	1																																																																																												1
AGAATA	1																																																																																												1
AGACAT	1																																																																																												1
AGAGAT	1																																																																																												1
AGATAA	1																																																																																												1
AGTGCG	2																																																																																												2
AGTTAA	1																																																																																												1
AGTTAT	1																																																																																												1
ATAAAA	2																																																																																												2
ATAAAC	1																																																																																												1
ATAAGA	1																																																																																												1
ATAGCG	2																																																																																												2
ATATAA	1																																																																																												1
ATATAG	2																																																																																												2
ATATCC	1																																																																																												1
ATATTG	1																																																																																												1
ATATTT	1	1																																																																																											2
ATCCGT	2																																																																																												2
ATCTAT	1																																																																																												1
ATTATG	1																																																																																												1
ATTCAA	2	1																																																																																											3
ATTGAT	1																																																																																												1
ATTTGA	17	1	1																																																																																										19
ATTTTA	4																																																																																												4
ATTTTC	1																																																																																												1
ATTTTT	2																																																																																												2
CAAATT	3																																																																																												3
CAAGAC	3																																																																																												3
CACACC	1																																																																																												1
CACCAG	1																																																																																												1
CACTTT	1																																																																																												1
CAGATC	1																																																																																												1
CCGCTT	1																																																																																												1
CCGTGC	1																																																																																												1
CCTGTT	1	1																																																																																											2
CGTCAA	1																																																																																												1
CTACCT		1																																																																																											1
CTTACA	1																																																																																												1
CTTCCC	1																																																																																												1
CTTTAA	1																																																																																												1
CTTTAT	1																																																																																												1
GAAACG	1																																																																																												1
GAAACT	1																																																																																												1
GAATTA	1																																																																																												1
GACAAA	2																																																																																												2
GCACAC	1																																																																																												1
GCCGTA	1																																																																																												1
GCGCCG	1																																																																																												1
GCTGGA	1																																																																																												1
GGAGCT	1																																																																																												1
GGGGGT	1																																																																																												1
GGGTGT	1																																																																																												1
GGTAAG	1																																																																																												1
GTAAAT	1																																																																																												1
GTATAT	1																																																																																												1
GTCTTG	5																																																																																												5
GTTTCG	1																																																																																												1
TAAAAA	1																																																																																												1
TACAAT	1																																																																																												1
TACTTA	1																																																																																												1
TAGCTA	1																																																																																												1
TAGTTT	1																																																																																												1
TATCGG	1																																																																																												1
TATGAT	1																																																																																												1
TATTTA	2																																																																																												2
TATTTT	3																																																																																												3
TCAAAT	3																																																																																												3
TCGAAG	1																																																																																												1
TCTAGG	1																																																																																												1
TGAATT	1	1																																																																																											2
TGGCTT		1																																																																																											1
TGTCAG	1																																																																																												1
TGTGTA	2																																																																																												2
TTAAAA	1																																																																																												1
TTAATT	1																																																																																												1
TTACTA	1																																																																																												1
TTATAT	1	1																																																																																											2
TTATGT	1																																																																																												1
TTATTC	2																																																																																												2
TTCAAA	5																																																																																												5
TTCGGT	1																																																																																												1
TTCTTA	2																																																																																												2
TTGAAG	1																																																																																												1
TTGAAT	2																																																																																												2
TTTAAT	1																																																																																												1
TTTATA	2																																																																																												2
TTTATT	3																																																																																												3
TTTGAA	3	1																																																																																											4
TTTGAC	1																																																																																												1
TTTGAG	1																																																																																												1
TTTGTA	1																																																																																												1
TTTGTC	3																																																																																												3
TTTTAC	1																																																																																												1
TTTTAT	2																																																																																												2
TTTTCA	1																																																																																												1
TTTTCT	1																																																																																												1
TTTTTA	7																																																																																												7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	44	33	31	24	19	22	20	15	11	12	4	6	8	7		3	3	5	1	3	6	4	4	1	3	3	1	1	1	1	5	2	5	1	2	2			1	2	3	1		1	1	2	2	1	4	2	1	1			1	2	6	4																	1	349
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	2	1	3	3				1	1		1									1	1										1								1																	1																			21
AC/GT	-	-	-	126	62	40	31	13	12	9	4	7	2		2	2		2	1	2	1	1	4	1		1																																																																			323
AG/CT	-	-	-	47	30	30	13	6	2	1	1				1																																																																														131
AT/AT	-	-	-	221	101	65	49	37	29	16	16	7	8	10	5	5	2	3	2																																																																										576
CG/CG	-	-	-	5	1																																																																																								6
AAC/GTT	-	-	10	2	2	1																																																																																							15
AAG/CTT	-	-	15	6	2			1																																																																																					24
AAT/ATT	-	-	334	163	75	18	8	3	1																																																																																				602
ACC/GGT	-	-	13	1																																																																																									14
ACG/CGT	-	-	2																																																																																										2
ACT/AGT	-	-	13	4	2	1	1																																																																																						21
AGC/CTG	-	-	3	3																																																																																									6
AGG/CCT	-	-	1	1																																																																																									2
ATC/ATG	-	-	54	6	5	1																																																																																							66
CCG/CGG	-	-	2																																																																																										2
AAAC/GTTT	-	18	9																																																																																										27
AAAG/CTTT	-	68	19	9	1	2	1		1																																																																																				101
AAAT/ATTT	-	484	125	32	11	3	1	1																																																																																					657
AACC/GGTT	-		1																																																																																										1
AACG/CGTT	-	4																																																																																											4
AACT/AGTT	-	1	1			1																																																																																							3
AAGC/CTTG	-	5																																																																																											5
AAGG/CCTT	-	7	1																																																																																										8
AAGT/ACTT	-	22	3	1																																																																																									26
AATC/ATTG	-	5																																																																																											5
AATG/ATTC	-	12	6																																																																																										18
AATT/AATT	-	21	1																																																																																										22
ACAG/CTGT	-	25	1	2						2																																																																																			30
ACAT/ATGT	-	29	5	1		2																																																																																							37
ACCG/CGGT	-	1																																																																																											1
ACCT/AGGT	-	7	1				1																																																																																						9
ACGC/CGTG	-	8	2		1	1																																																																																							12
ACGT/ACGT	-		1																																																																																										1
ACTC/AGTG	-	1	2																																																																																										3
ACTG/AGTC	-	4																																																																																											4
AGAT/ATCT	-	28	10	3	1	1																																																																																							43
AGCG/CGCT	-			1																																																																																									1
AGCT/AGCT	-		1																																																																																										1
AGGC/CCTG	-	1																																																																																											1
ATCC/ATGG	-	1	1																																																																																										2
ATGC/ATGC	-	1																																																																																											1
AAAAC/GTTTT	18	1																																																																																											19
AAAAG/CTTTT	14	2																																																																																											16
AAAAT/ATTTT	197	8	3	1																																																																																									209
AAACC/GGTTT	1																																																																																												1
AAACG/CGTTT	1																																																																																												1
AAACT/AGTTT	12	1																																																																																											13
AAAGC/CTTTG	1																																																																																												1
AAAGG/CCTTT	2																																																																																												2
AAAGT/ACTTT	4	1																																																																																											5
AAATC/ATTTG	16	3																																																																																											19
AAATG/ATTTC	7	1																																																																																											8
AAATT/AATTT	65	4	2																																																																																										71
AACAC/GTGTT	8																																																																																												8
AACAG/CTGTT	1																																																																																												1
AACAT/ATGTT	9																																																																																												9
AACCG/CGGTT	1																																																																																												1
AACCT/AGGTT	24	13	6	3	2	4	2	7	5	3	2	3	3																																																																																77
AACGC/CGTTG	1																																																																																												1
AACGG/CCGTT	1																																																																																												1
AACGT/ACGTT	3	1																																																																																											4
AACTC/AGTTG	1																																																																																												1
AACTG/AGTTC	3	1																																																																																											4
AACTT/AAGTT	3	1																																																																																											4
AAGAC/CTTGT	5	2	1																																																																																										8
AAGAG/CTCTT	3																																																																																												3
AAGAT/ATCTT	4																																																																																												4
AAGCC/CTTGG	1	1																																																																																											2
AAGCG/CGCTT	2																																																																																												2
AAGCT/AGCTT	1																																																																																												1
AAGGC/CCTTG	1	1																																																																																											2
AAGGG/CCCTT	2																																																																																												2
AAGGT/ACCTT	1																																																																																												1
AAGTC/ACTTG	2																																																																																												2
AAGTG/ACTTC	8																																																																																												8
AATAC/ATTGT	43	13	1																																																																																										57
AATAG/ATTCT	10	3	1																																																																																										14
AATAT/ATATT	48	2																																																																																											50
AATCC/ATTGG	5																																																																																												5
AATCG/ATTCG	2																																																																																												2
AATCT/AGATT	5		1																																																																																										6
AATGC/ATTGC	2																																																																																												2
AATGG/ATTCC	3			2	1																																																																																								6
AATGT/ACATT	6	1																																																																																											7
AATTC/AATTG	3	1																																																																																											4
ACACC/GGTGT	1																																																																																												1
ACACG/CGTGT	4																																																																																												4
ACACT/AGTGT	8	1																																																																																											9
ACAGC/CTGTG	2																																																																																												2
ACAGT/ACTGT	1																																																																																												1
ACATC/ATGTG	8																																																																																												8
ACATG/ATGTC	3																																																																																												3
ACCAG/CTGGT	1																																																																																												1
ACCAT/ATGGT	6																																																																																												6
ACCCC/GGGGT	1																																																																																												1
ACCCT/AGGGT	3	1																																																																																											4
ACCGC/CGGTG	1																																																																																												1
ACCGT/ACGGT	3																																																																																												3
ACCTG/AGGTC	1																																																																																												1
ACGCC/CGTGG	1																																																																																												1
ACGCG/CGCGT	3																																																																																												3
ACGGC/CCGTG	2																																																																																												2
ACGGG/CCCGT	1		1																																																																																										2
ACTAG/AGTCT	9	1																																																																																											10
ACTAT/AGTAT	4																																																																																												4
ACTCT/AGAGT	3																																																																																												3
ACTGC/AGTGC	1																																																																																												1
AGAGG/CCTCT	4																																																																																												4
AGATC/ATCTG	6																																																																																												6
AGATG/ATCTC	2																																																																																												2
AGCAT/ATGCT	2																																																																																												2
AGCCG/CGGCT	3																																																																																												3
AGCCT/AGGCT	2																																																																																												2
AGCGC/CGCTG	1																																																																																												1
AGCTC/AGCTG	1																																																																																												1
AGGAT/ATCCT	10																																																																																												10
ATATC/ATATG	2																																																																																												2
ATCCC/ATGGG	1																																																																																												1
ATCGC/ATGCG	1																																																																																												1
AAAAAG/CTTTTT	3																																																																																												3
AAAAAT/ATTTTT	28	1																																																																																											29
AAAACT/AGTTTT	1																																																																																												1
AAAAGT/ACTTTT	2																																																																																												2
AAAATG/ATTTTC	2																																																																																												2
AAAATT/AATTTT	8																																																																																												8
AAACAT/ATGTTT	2																																																																																												2
AAACCG/CGGTTT	2																																																																																												2
AAACGG/CCGTTT	1																																																																																												1
AAACTC/AGTTTG	1																																																																																												1
AAACTG/AGTTTC	1																																																																																												1
AAAGAC/CTTTGT	6	1																																																																																											7
AAAGAT/ATCTTT	3																																																																																												3
AAAGCC/CTTTGG		1																																																																																											1
AAAGTC/ACTTTG	1																																																																																												1
AAAGTG/ACTTTC	1																																																																																												1
AAAGTT/AACTTT	2																																																																																												2
AAATAC/ATTTGT	1																																																																																												1
AAATAT/ATATTT	8	2																																																																																											10
AAATGT/ACATTT	1																																																																																												1
AAATTC/AATTTG	43	4	2																																																																																										49
AACAGG/CCTGTT	1	1																																																																																											2
AACCGG/CCGGTT	1																																																																																												1
AACGTC/ACGTTG	1																																																																																												1
AACTAT/AGTTAT	1																																																																																												1
AACTTC/AAGTTG	1																																																																																												1
AAGAAT/ATTCTT	6																																																																																												6
AAGACC/CTTGGT	9																																																																																												9
AAGCGG/CCGCTT	1																																																																																												1
AAGGGG/CCCCTT	1																																																																																												1
AAGGGT/ACCCTT	1																																																																																												1
AAGGTC/ACCTTG	1																																																																																												1
AAGTAT/ACTTAT	2																																																																																												2
AAGTCG/ACTTCG	1																																																																																												1
AAGTGT/ACACTT	1																																																																																												1
AATACT/AGTATT	1																																																																																												1
AATAGT/ACTATT	1																																																																																												1
AATATC/ATATTG	2																																																																																												2
AATCAT/ATGATT	2																																																																																												2
AATTAC/AATTGT	2																																																																																												2
AATTAG/AATTCT	1																																																																																												1
ACACAT/ATGTGT	2																																																																																												2
ACACCC/GGGTGT	2																																																																																												2
ACACGC/CGTGTG	1																																																																																												1
ACACTG/AGTGTC	1																																																																																												1
ACATAG/ATGTCT	1																																																																																												1
ACATAT/ATATGT	2																																																																																												2
ACCAGC/CTGGTG	1																																																																																												1
ACCCCC/GGGGGT	1																																																																																												1
ACCGAT/ATCGGT	1																																																																																												1
ACCGTC/ACGGTG	1																																																																																												1
ACCTAG/AGGTCT	1																																																																																												1
ACCTCT/AGAGGT		1																																																																																											1
ACGGAT/ATCCGT	2																																																																																												2
ACGGCT/AGCCGT	1																																																																																												1
ACGGGC/CCCGTG	1																																																																																												1
ACTCGC/AGTGCG	2																																																																																												2
AGAGAT/ATCTCT	1																																																																																												1
AGATAT/ATATCT	3																																																																																												3
AGATCC/ATCTGG	1																																																																																												1
AGCGAT/ATCGCT	2																																																																																												2
AGCTAT/AGCTAT	1																																																																																												1
AGCTCC/AGCTGG	2																																																																																												2
ATATCC/ATATGG	1																																																																																												1
CCGGCG/CCGGCG	1																																																																																												1
