Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018245435.1/fasta/hub_GCA_018245435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              169171
Total size of examined sequences (bp):           50706415
Total number of identified SSRs:                 6442
Number of SSR containing sequences:              5540
Number of sequences containing more than 1 SSR:  620
Number of SSRs present in compound formation:    715


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	233
2	2441
3	626
4	864
5	1828
6	450

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	5	6	3	4	2	3	1	4		2				3			2			1		1							1																												1	47
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	5	1	1	4	5	3	8	1	1	2		1	2			1	3	1			1	1		3		2	1							1								1		1									1					53
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	2	6	2	1	3	3	5		4	1	5		1	3	3		1		1	1		2			1		2		1		1			1																								56
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	6	11	8	2	3	4	5	3	4		3		1			1			2		1		7			1			1	1					1			2						1		1												77
AC	-	-	-	49	34	12	15	7	6	4	1	2	1	1					1							1																						1																												135
AG	-	-	-	77	54	26	21	11	4	5	1	3	3			2	1	2		1		2																																																						213
AT	-	-	-	181	91	41	41	26	17	11	9	7	7	4	3	1	3	1		1							1																																																	445
CA	-	-	-	36	14	8	5	6	3	5	1			1					1		1	1			1	1		1			1																																													86
CG	-	-	-	3	1	1	1			1																																																																		7
CT	-	-	-	78	43	36	18	14	5	2	6	2	1	2	2	1	1			2				1																																																				214
GA	-	-	-	77	41	26	14	15	7	3	3	3	1	1	1			1	1			1	1						1																																															197
GC	-	-	-	7																																																																								7
GT	-	-	-	37	21	17	12	10	5	4	1	1	3			1	1		1			1					1								1																																									117
TA	-	-	-	213	99	47	34	23	26	17	7	8	5	2	2	3	1		1				1																																																					489
TC	-	-	-	123	93	39	26	22	11	9	8	4	3		2	2				2	1																																																							345
TG	-	-	-	67	35	17	14	14	8	8	5	6	2	1	2	2	1		1		1		1									1																																												186
AAC	-	-	5																																																																									5
AAG	-	-	17	3	1	2																																																																						23
AAT	-	-	26	8	3	1	2																																																																					40
ACA	-	-	5	3																																																																								8
ACC	-	-	2		1					1																																																																		4
ACT	-	-	6		1																																																																							7
AGA	-	-	6	2	2																																																																							10
AGC	-	-	2	1																																																																								3
AGG	-	-	3																																																																									3
AGT	-	-	10	1	1																																																																							12
ATA	-	-	23	12	4	1		1				1																																																																42
ATC	-	-	9	4	1																																																																							14
ATG	-	-	5	6	1																																																																							12
ATT	-	-	30	10	4	1		1																																																																				46
CAA	-	-	1		1																																																																							2
CAC	-	-	1	1																																																																								2
CAT	-	-	3	4																																																																								7
CCA	-	-	2	2	1																																																																							5
CCG	-	-	3		1																																																																							4
CGA	-	-	1																																																																									1
CGC	-	-	2	2		1																																																																						5
CGG	-	-	1	1		1																																																																						3
CTA	-	-	4					1																																																																				5
CTC	-	-		3																																																																								3
CTG	-	-	2																																																																									2
CTT	-	-	11	3																																																																								14
GAA	-	-	12	3	1																																																																							16
GAG	-	-	3	1																																																																								4
GAT	-	-	7																																																																									7
GCA	-	-	1	3		1																																																																						5
GCC	-	-	3																																																																									3
GCG	-	-	7		2																																																																							9
GCT	-	-	3																																																																									3
GGA	-	-	4		1	1																																																																						6
GGC	-	-	3	1																																																																								4
GGT	-	-	2	1	1																																																																							4
GTA	-	-	1	4		1																																																																						6
GTC	-	-	3																																																																									3
GTG	-	-	2	1			1		1																																																																			5
GTT	-	-	3		1																																																																							4
TAA	-	-	14	6	6	2	1																																																																					29
TAC	-	-	5	2																																																																								7
TAG	-	-	7	2				1																																																																				10
TAT	-	-	27	10	2	1		1																																																																				41
TCA	-	-	16	5		2																																																																						23
TCC	-	-	4																																																																									4
TCG	-	-	4		1																																																																							5
TCT	-	-	10	3																																																																								13
TGA	-	-	23	9	6																																																																							38
TGC	-	-	1	2																																																																								3
TGG	-	-	1	1	1																																																																							3
TGT	-	-	2	1	1																																																																							4
TTA	-	-	40	6	4	1	1																																																																					52
TTC	-	-	15	5	1																																																																							21
TTG	-	-	9	2		1																																																																						12
AAAC	-	11	2	2																																																																								15
AAAG	-	8									1																																																																	9
AAAT	-	26	3		1																																																																							30
AACA	-	9	3																																																																									12
AACC	-		1																																																																									1
AACG	-	1																																																																										1
AACT	-	1																																																																										1
AAGA	-	5	2																																																																									7
AAGC	-	2																																																																										2
AAGG	-	3																																																																										3
AATA	-	23	2	2	2																																																																							29
AATC	-	3																																																																										3
AATG	-	3		1			1																																																																					5
AATT	-	5	1																																																																									6
ACAA	-	9	1																																																																									10
ACAG	-	19	3																																																																									22
ACAT	-	6	4				1																																																																					11
ACCG	-	1																																																																										1
ACCT	-	1																																																																										1
ACTA	-	1																																																																										1
ACTG	-	1	1																																																																									2
ACTT	-				1																																																																							1
AGAA	-	6	2																																																																									8
AGAC	-	7	4	1																																																																								12
AGAT	-	2																																																																										2
AGCG	-	1																																																																										1
AGTA	-	1																																																																										1
AGTC	-	4																																																																										4
ATAA	-	16	1	2																																																																								19
ATAC	-	6	1																																																																									7
ATAG	-	1						1																																																																				2
ATCA	-	3																																																																										3
ATCT	-	3	2																																																																									5
ATGA	-	3																																																																										3
ATGC	-		1																																																																									1
ATGG	-				1	1																																																																						2
ATGT	-	5	1	1																																																																								7
ATTA	-	6	2																																																																									8
ATTC	-	3	3																																																																									6
ATTG	-	2																																																																										2
ATTT	-	19	4	4																																																																								27
CAAA	-	15	3	1	1																																																																							20
CAAG	-	1																																																																										1
CAAT	-	1																																																																										1
CACG	-	1		1					1																																																																			3
CACT	-	1																																																																										1
CAGA	-	3																																																																										3
CAGT	-	1																																																																										1
CATA	-	7		1																																																																								8
CATC	-	1	1																																																																									2
CATG	-	1																																																																										1
CATT	-	2																																																																										2
CCCT	-	1																																																																										1
CCTA	-	1																																																																										1
CCTC	-	1																																																																										1
CCTG	-	1																																																																										1
CCTT	-	1																																																																										1
CGAG	-	1																																																																										1
CGAT	-	1																																																																										1
CGGA	-		1																																																																									1
CGTA	-	1																																																																										1
CGTC	-		1																																																																									1
CGTG	-					1																																																																						1
CTAA	-		1																																																																									1
CTAC	-	1																																																																										1
CTCA	-	1																																																																										1
CTCG	-		1																																																																									1
CTGA	-	3	1																																																																									4
CTGT	-	8	3																																																																									11
CTTA	-	3																																																																										3
CTTC	-	1																																																																										1
CTTG	-	1																																																																										1
CTTT	-	3	1																																																																									4
GAAA	-	6	1																																																																									7
GAAC	-	1																																																																										1
GAAG	-	1																																																																										1
GAAT	-	1	1																																																																									2
GACA	-	11	4																																																																									15
GACG	-	1	1																																																																									2
GACT	-	3	1																																																																									4
GAGG	-	1																																																																										1
GAGT	-	1		1																																																																								2
GATA	-	1				2																																																																						3
GATG	-	2																																																																										2
GCAG	-		1																																																																									1
GCGA	-	1																																																																										1
GCGT	-	1																																																																										1
GCTA	-	1																																																																										1
GGAA	-			1																																																																								1
GGAC	-	1																																																																										1
GGAG	-		1																																																																									1
GGAT	-	2																																																																										2
GGTG	-	1																																																																										1
GTAG	-	2																																																																										2
GTAT	-	3																																																																										3
GTCA	-	1	1	2																																																																								4
GTCG	-		1		1																																																																							2
GTCT	-	10	2			1			1																																																																			14
GTGA	-	5				1																																																																						6
GTGC	-	4																																																																										4
GTTA	-	1																																																																										1
GTTT	-	7																																																																										7
TAAA	-	49	4	1																																																																								54
TAAC	-			1																																																																								1
TAAG	-	2																																																																										2
TAAT	-	1																																																																										1
TACA	-	3	1																																																																									4
TACG	-	2																																																																										2
TACT	-	3		1																																																																								4
TAGA	-	3																																																																										3
TAGC	-	1																																																																										1
TAGG	-	1	3																																																																									4
TAGT	-	1																																																																										1
TATC	-	2			1																																																																							3
TATG	-	12	4																																																																									16
TATT	-	17	5	3																																																																								25
TCAA	-	3	1																																																																									4
TCAC	-	1					1																																																																					2
TCAG	-	4	2	1	1	1																																																																						9
TCAT	-	1	1																																																																									2
TCCA	-		1																																																																									1
TCCC	-	1																																																																										1
TCCT	-	1																																																																										1
TCGA	-	1																																																																										1
TCGG	-	2	1																																																																									3
TCTA	-	1	2	1																																																																								4
TCTG	-	6	1																																																																									7
TCTT	-	7		1																																																																								8
TGAA	-	3	2																																																																									5
TGAC	-	4	3	1																																																																								8
TGAT	-	1	1	1																																																																								3
TGGA	-	1																																																																										1
TGGT	-	1																																																																										1
TGTA	-	10	2	1	1	1																																																																						15
TGTC	-	12	3	3		1	2																																																																					21
TGTT	-	8		1			1		2																																																																			12
TTAA	-	5	1																																																																									6
TTAT	-	21	2	3																																																																								26
TTCA	-	2	2																																																																									4
TTCT	-	10		1																																																																								11
TTGA	-	2																																																																										2
TTGC	-	2																																																																										2
TTGT	-	5																																																																										5
TTTA	-	47	10	4																																																																								61
TTTC	-	16	7	1																																																																								24
TTTG	-	21	1	2	1																																																																							25
AAAAC	4																																																																											4
AAAAG	5																																																																											5
AAAAT	36																																																																											36
AAACA	2																																																																											2
AAACT	3																																																																											3
AAAGA	9																																																																											9
AAAGC	10																																																																											10
AAAGG	1																																																																											1
AAAGT		1																																																																										1
AAATA	16	1																																																																										17
AAATC	3																																																																											3
AAATG	2																																																																											2
AAATT	19																																																																											19
AACAA	3																																																																											3
AACAC					1																																																																							1
AACAG	2																																																																											2
AACAT	1																																																																											1
AACCA	1																																																																											1
AACCT	7	5	2		1	1	1			1					1																																																													19
AACGA	2																																																																											2
AACGG	1																																																																											1
AACGT	2																																																																											2
AACTA		1																																																																										1
AACTG	2																																																																											2
AACTT	1																																																																											1
AAGAA	4																																																																											4
AAGAT	1																																																																											1
AAGGA	1																																																																											1
AAGTA	1																																																																											1
AAGTG	1																																																																											1
AATAA	18																																																																											18
AATAC	5	1																																																																										6
AATAG	3	1																																																																										4
AATAT	5																																																																											5
AATCA	4																																																																											4
AATCG	1																																																																											1
AATCT	2																																																																											2
AATGA	2	1																																																																										3
AATGG	6	1	1	1		1																																																																						10
AATGT	4																																																																											4
AATTA	5	1																																																																										6
AATTC	3																																																																											3
AATTG	3																																																																											3
AATTT	14	1																																																																										15
ACAAA	2																																																																											2
ACAAC		1																																																																										1
ACAAG	1																																																																											1
ACAAT	3																																																																											3
ACACA	2	1																																																																										3
ACACT	1																																																																											1
ACAGC	1																																																																											1
ACAGT	1																																																																											1
ACATA	2																																																																											2
ACATC	2																																																																											2
ACATG	2																																																																											2
ACATT	2																																																																											2
ACCAG		1																																																																										1
ACCAT	2																																																																											2
ACCCA	1																																																																											1
ACCGA			1																																																																									1
ACCGC	1																																																																											1
ACCTA	8	6		2	2	4	2	2		1		1																																																																28
ACCTG	1																																																																											1
ACCTT	3	1																																																																										4
ACGAA	1																																																																											1
ACGAC	1																																																																											1
ACGAT	3																																																																											3
ACGGA	1																																																																											1
ACGGG	17																																																																											17
ACGTA	2	1																																																																										3
ACGTC	1																																																																											1
ACGTT	1																																																																											1
ACTAA	1																																																																											1
ACTAC	2																																																																											2
ACTAT	1																																																																											1
ACTCC	1																																																																											1
ACTCT	1																																																																											1
ACTTC	2																																																																											2
ACTTT	1																																																																											1
AGAAA	8																																																																											8
AGAAG	2																																																																											2
AGAAT	4																																																																											4
AGACA	2																																																																											2
AGACC	1																																																																											1
AGACG	1																																																																											1
AGAGA	1																																																																											1
AGAGT	1																																																																											1
AGATC	1																																																																											1
AGATG	1	1																																																																										2
AGATT	3		1																																																																									4
AGCAA	1																																																																											1
AGCCA	2																																																																											2
AGCCC	1																																																																											1
AGCCT	1																																																																											1
AGCTA	1																																																																											1
AGCTC	1																																																																											1
AGGAA	3	1																																																																										4
AGGAG		1																																																																										1
AGGAT	1																																																																											1
AGGGA	1	1																																																																										2
AGGGT	3																																																																											3
AGGTA	1																																																																											1
AGGTG	1																																																																											1
AGGTT	18	4	2	1		1		2	1		2		1																																																															32
AGTAA	1																																																																											1
AGTAC	1																																																																											1
AGTAG		1																																																																										1
AGTAT	2																																																																											2
AGTCA	1																																																																											1
AGTCT	2																																																																											2
AGTGC	1	1																																																																										2
AGTGT	1																																																																											1
AGTTC	2																																																																											2
AGTTT	2	1																																																																										3
ATAAA	14	1	2																																																																									17
ATAAC	3																																																																											3
ATAAG	1																																																																											1
ATAAT	7																																																																											7
ATACA	2																																																																											2
ATACT	1																																																																											1
ATAGA	4																																																																											4
ATAGG	1																																																																											1
ATAGT	3																																																																											3
ATATA	10																																																																											10
ATATC	1																																																																											1
ATATT	10																																																																											10
ATCAA	7	1																																																																										8
ATCAG	1																																																																											1
ATCAT	4																																																																											4
ATCCA	2																																																																											2
ATCCT	1																																																																											1
ATCGA	1																																																																											1
ATCTA	1																																																																											1
ATCTG	1																																																																											1
ATCTT	2																																																																											2
ATGAA	3																																																																											3
ATGAC	2																																																																											2
ATGGA	1			1																																																																								2
ATGGC				1																																																																								1
ATGGG	1																																																																											1
ATGTA	2																																																																											2
ATGTC	2																																																																											2
ATGTG	1			1																																																																								2
ATGTT	1																																																																											1
ATTAA	11																																																																											11
ATTAC	1																																																																											1
ATTAG	2				1																																																																							3
ATTAT	9	1																																																																										10
ATTCA	1	1																																																																										2
ATTCC	3	1	1	1	1	1																																																																						8
ATTCG	5																																																																											5
ATTCT	2	1																																																																										3
ATTGA	1																																																																											1
ATTGG	3																																																																											3
ATTGT	4	1																																																																										5
ATTTA	10																																																																											10
ATTTC	7																																																																											7
ATTTG	2	1																																																																										3
ATTTT	18																																																																											18
CAAAA	2																																																																											2
CAAAC	1																																																																											1
CAAAT	1	4																																																																										5
CAACA	2																																																																											2
CAAGG	1																																																																											1
CAATA	1																																																																											1
CAATC	1																																																																											1
CAATG	1																																																																											1
CAATT	3																																																																											3
CACAC		1																																																																										1
CACAT		1																																																																										1
CACGA	1																																																																											1
CACTA	1																																																																											1
CACTC	2																																																																											2
CAGAA	1																																																																											1
CAGAT	1																																																																											1
CAGTA	2																																																																											2
CAGTT	5																																																																											5
CATAA	3																																																																											3
CATAG	1																																																																											1
CATCA		1																																																																										1
CATCG		1																																																																										1
CATGT	1																																																																											1
CATTA	2																																																																											2
CATTC	3	1																																																																										4
CATTT	3																																																																											3
CCAAA	2																																																																											2
CCAAG	1																																																																											1
CCACC	1																																																																											1
CCAGG	1																																																																											1
CCAGT	1																																																																											1
CCCCT	2																																																																											2
CCCGG	1																																																																											1
CCCGT	7		1	1																																																																								9
CCCTC	1																																																																											1
CCGCG	3																																																																											3
CCGCT	1																																																																											1
CCGTC	1	2		1																																																																								4
CCTAA	3		2	1	1	2	3	3	4		1	1																																																																21
CCTAG	1																																																																											1
CCTCC	1																																																																											1
CCTCT	1																																																																											1
CCTGT	1																																																																											1
CCTTT	2																																																																											2
CGAAC	2																																																																											2
CGAAT	4																																																																											4
CGACG	1																																																																											1
CGAGA	2																																																																											2
CGAGG	2																																																																											2
CGATG	2																																																																											2
CGATT	2																																																																											2
CGCCG	1																																																																											1
CGCCT	3	1																																																																										4
CGCGA	1																																																																											1
CGCGC	2																																																																											2
CGCGG	1																																																																											1
CGGCG	4																																																																											4
CGGGA	6																																																																											6
CGTCA	3	1																																																																										4
CGTCC	6				1																																																																							7
CGTCG	1																																																																											1
CGTCT	1																																																																											1
CGTGA		1																																																																										1
CGTTC	1																																																																											1
CGTTG		1																																																																										1
CTAAA	1																																																																											1
CTAAC	14	3	5	2	2	2	1	2																																																																				31
CTAAG	1																																																																											1
CTACC	1																																																																											1
CTATA	2																																																																											2
CTATT	2																																																																											2
CTCAA	1																																																																											1
CTCAG	1																																																																											1
CTCCG	2		1																																																																									3
CTCTA	1																																																																											1
CTCTC	2	1																																																																										3
CTCTT	3																																																																											3
CTGAT	1																																																																											1
CTGCG	1																																																																											1
CTGTA	1																																																																											1
CTTAA	1																																																																											1
CTTCA	1																																																																											1
CTTCC		1																																																																										1
CTTCT	2																																																																											2
CTTGA	1																																																																											1
CTTGC	2																																																																											2
CTTGG	1	1																																																																										2
CTTTG	1																																																																											1
CTTTT	5																																																																											5
GAAAA	6																																																																											6
GAAAC		1																																																																										1
GAAAG	3																																																																											3
GAAAT	1						1																																																																					2
GAACC			1																																																																									1
GAAGA	1																																																																											1
GAAGC	1																																																																											1
GAATA	1	1																																																																										2
GAATG	4																																																																											4
GAATT				1	1																																																																							2
GACAC	2																																																																											2
GACGA	1																																																																											1
GACGG	2	1																																																																										3
GACGT	1		1																																																																									2
GACTA	1																																																																											1
GAGAG	1																																																																											1
GAGCC		1																																																																										1
GAGCT	1																																																																											1
GAGGA	1																																																																											1
GAGTA	1																																																																											1
GATAA	2																																																																											2
GATAC	3																																																																											3
GATAG	1																																																																											1
GATAT	1																																																																											1
GATCA	1	1																																																																										2
GATCG	1																																																																											1
GATCT	1																																																																											1
GATGA	1																																																																											1
GATGC	2																																																																											2
GATGT	1																																																																											1
GATTA		1																																																																										1
GATTC	2																																																																											2
GATTG	1																																																																											1
GATTT	1		1																																																																									2
GCACG			1																																																																									1
GCACT	1																																																																											1
GCAGT			1																																																																									1
GCCAC	1																																																																											1
GCCAG	1																																																																											1
GCCAT	1																																																																											1
GCCGC	1																																																																											1
GCCTA	1																																																																											1
GCCTT	1																																																																											1
GCGAA	1																																																																											1
GCGAT	1																																																																											1
GCGGC	3																																																																											3
GCGGG	1																																																																											1
GCGTG		1																																																																										1
GCTCA	1																																																																											1
GCTGA	1																																																																											1
GCTTA	1																																																																											1
GGAAT		2		1			1	1																																																																				5
GGACA	1																																																																											1
GGACG	2																																																																											2
GGACT	1																																																																											1
GGAGT	1																																																																											1
GGATA	1																																																																											1
GGCCA	1																																																																											1
GGCGA	1																																																																											1
GGCGC	1																																																																											1
GGGAA	3																																																																											3
GGGAC	5	1																																																																										6
GGGAT	2																																																																											2
GGGGA	2																																																																											2
GGGGT	1																																																																											1
GGGTA	1																																																																											1
GGTAA	1		1																																																																									2
GGTCG	1																																																																											1
GGTGA	2																																																																											2
GGTTA	10	7	1	1	4	2	4	5	3	4	4	2	3																																																															50
GGTTC	4																																																																											4
GGTTT	2																																																																											2
GTAAA	1																																																																											1
GTAAC	1																																																																											1
GTAAT	1																																																																											1
GTACA	3																																																																											3
GTACG	1																																																																											1
GTACT	1	1																																																																										2
GTAGC	2																																																																											2
GTAGG	1																																																																											1
GTAGT	2																																																																											2
GTATA	1																																																																											1
GTATC		1																																																																										1
GTATT	4																																																																											4
GTCAA	1		1																																																																									2
GTCCA	2																																																																											2
GTCCC	7	2		1																																																																								10
GTCCG	1																																																																											1
GTCCT	1																																																																											1
GTCGT	2																																																																											2
GTCTT	1																																																																											1
GTGAA	1																																																																											1
GTGAT	1																																																																											1
GTGCA	1																																																																											1
GTGCG	1																																																																											1
GTGGA	3		1				1																																																																					5
GTGGG	1																																																																											1
GTGGT	3	1																																																																										4
GTGTA	1	1		1																																																																								3
GTGTC	1			1																																																																								2
GTTAA	2																																																																											2
GTTAC	1																																																																											1
GTTAG	9	2	4		5	4	3	4	2	2	2																																																																	37
GTTCA	4																																																																											4
GTTCG	1	1	1																																																																									3
GTTCT	1																																																																											1
GTTGG	1																																																																											1
GTTTA	1																																																																											1
GTTTG	1																																																																											1
GTTTT	3																																																																											3
TAAAA	21	1																																																																										22
TAAAC	3	1																																																																										4
TAAAG	4																																																																											4
TAAAT	11																																																																											11
TAACC	4	1	4	2	2	2		5		1	1	1	1																																																															24
TAACT	1																																																																											1
TAAGG	1																																																																											1
TAATA	9																																																																											9
TAATC	1			1																																																																								2
TAATG	2																																																																											2
TAATT	9																																																																											9
TACAA	3		1																																																																									4
TACAG	1	1																																																																										2
TACAT	4																																																																											4
TACCA	3																																																																											3
TACCT	1																																																																											1
TACGA	1																																																																											1
TACGC	1																																																																											1
TACGG	1																																																																											1
TACGT		1	1																																																																									2
TACTG	1																																																																											1
TACTT	1		1																																																																									2
TAGAA	4	2																																																																										6
TAGAC	1																																																																											1
TAGAG	1																																																																											1
TAGAT	1																																																																											1
TAGGG	1																																																																											1
TAGGT	6	4	6	2				1	1		1																																																																	21
TAGTA	1	1																																																																										2
TAGTG	1	1																																																																										2
TAGTT	1																																																																											1
TATAA	12																																																																											12
TATAC	1																																																																											1
TATAG	6																																																																											6
TATAT	12																																																																											12
TATCA	1																																																																											1
TATCC		1																																																																										1
TATCG	2																																																																											2
TATGA	1																																																																											1
TATGG	1																																																																											1
TATGT	1																																																																											1
TATTA	17		1																																																																									18
TATTC	4		1																																																																									5
TATTG	7	1																																																																										8
TATTT	20																																																																											20
TCAAA	6	2																																																																										8
TCAAC	1																																																																											1
TCAAT	2	1																																																																										3
TCACA	1																																																																											1
TCACC	1																																																																											1
TCACG	2																																																																											2
TCACT	2																																																																											2
TCAGA	1																																																																											1
TCAGT	2																																																																											2
TCATA	1																																																																											1
TCATG	1																																																																											1
TCATT	1																																																																											1
TCCAC	2																																																																											2
TCCAG	1																																																																											1
TCCAT	1																																																																											1
TCCCA	1																																																																											1
TCCCC	1																																																																											1
TCCCG	10																																																																											10
TCCGA	1																																																																											1
TCCTC	2																																																																											2
TCCTG	3																																																																											3
TCGAA	5																																																																											5
TCGAT	2																																																																											2
TCGCG	1																																																																											1
TCGGT	2																																																																											2
TCGTA	3																																																																											3
TCGTG		1																																																																										1
TCTAA	3																																																																											3
TCTAG	1																																																																											1
TCTAT	1	1																																																																										2
TCTCA	3																																																																											3
TCTCG	1																																																																											1
TCTCT	5																																																																											5
TCTGT	1																																																																											1
TCTTA	1																																																																											1
TCTTC	5																																																																											5
TCTTG	1	1																																																																										2
TCTTT	4																																																																											4
TGAAA	2																																																																											2
TGAAC	1																																																																											1
TGAAG	3																																																																											3
TGAAT	1																																																																											1
TGACA	2																																																																											2
TGACT	2																																																																											2
TGAGA	1																																																																											1
TGAGG	1																																																																											1
TGATC	1																																																																											1
TGATG		1																																																																										1
TGATT	4		1																																																																									5
TGCAA	1																																																																											1
TGCAG	3																																																																											3
TGCGA	1																																																																											1
TGCTG	1																																																																											1
TGGAA	2	3																																																																										5
TGGAT	1																																																																											1
TGGCA	1																																																																											1
TGGGT	1																																																																											1
TGGTT	2																																																																											2
TGTAA	3	1																																																																										4
TGTAG	1																																																																											1
TGTAT	5																																																																											5
TGTCA	5																																																																											5
TGTCG	1																																																																											1
TGTCT	1																																																																											1
TGTGA	3																																																																											3
TGTGT	1																																																																											1
TGTTA	3																																																																											3
TGTTC	1																																																																											1
TGTTG	1																																																																											1
TGTTT	1																																																																											1
TTAAA	13																																																																											13
TTAAG	2																																																																											2
TTAAT	7																																																																											7
TTACA	1																																																																											1
TTACG	3																																																																											3
TTACT	6																																																																											6
TTAGA			1																																																																									1
TTAGC	1																																																																											1
TTAGG	11	3	3	2	4	6	3	7	3	1	4		2																																																															49
TTAGT	2																																																																											2
TTATA	5																																																																											5
TTATG	1																																																																											1
TTATT	20	1		1																																																																								22
TTCAA	4	1																																																																										5
TTCAT	2																																																																											2
TTCCA	4	1	1																																																																									6
TTCCC	1																																																																											1
TTCCT	2																																																																											2
TTCGA	5																																																																											5
TTCGG	6	2																																																																										8
TTCGT	1																																																																											1
TTCTA	7		1																																																																									8
TTCTC		1																																																																										1
TTCTG	2	1																																																																										3
TTCTT	3																																																																											3
TTGAA	3	1																																																																										4
TTGAC	2																																																																											2
TTGAG	3																																																																											3
TTGAT	5	1																																																																										6
TTGCT	3																																																																											3
TTGGA	3																																																																											3
TTGGC	1																																																																											1
TTGGG	1																																																																											1
TTGGT	3																																																																											3
TTGTA	3		1																																																																									4
TTGTC	1																																																																											1
TTGTG	1																																																																											1
TTGTT	7																																																																											7
TTTAA	18																																																																											18
TTTAC	1																																																																											1
TTTAG	4																																																																											4
TTTAT	23	1																																																																										24
TTTCA	9	2	1																																																																									12
TTTCC	2	1																																																																										3
TTTCG	2																																																																											2
TTTCT	3																																																																											3
TTTGA	4																																																																											4
TTTGG	1	1				1																																																																						3
TTTGT	5	1																																																																										6
TTTTA	30	3																																																																										33
TTTTC	7																																																																											7
TTTTG	5																																																																											5
AAAAAG	1																																																																											1
AAAAAT	3																																																																											3
AAACGG	1																																																																											1
AAAGTA	1																																																																											1
AAATAA	1																																																																											1
AAATAC			1																																																																									1
AAATTC	1																																																																											1
AAATTT	2																																																																											2
AACACC	1																																																																											1
AACATT		1																																																																										1
AACGTG	1																																																																											1
AACTTT	1																																																																											1
AAGAAC	1																																																																											1
AAGACC	1																																																																											1
AAGTAT	1																																																																											1
AATCCA	1																																																																											1
AATCCT	1																																																																											1
AATGAA	1																																																																											1
AATGTC	1																																																																											1
AATTAT	1																																																																											1
AATTCC	1																																																																											1
AATTTA	1																																																																											1
AATTTT	2																																																																											2
ACAAAA	1																																																																											1
ACAAAT		1																																																																										1
ACAATT	1																																																																											1
ACAGTG	1																																																																											1
ACATAA	1																																																																											1
ACATAC								1																																																																				1
ACATCA		1																																																																										1
ACATGT	1																																																																											1
ACCCGT	1																																																																											1
ACCGCC	1																																																																											1
ACCTCC	1																																																																											1
ACCTGG	1																																																																											1
ACCTTT	1																																																																											1
ACGGGG	2																																																																											2
ACGTAA	1																																																																											1
ACTAAG	1																																																																											1
ACTACA	1																																																																											1
ACTAGT	1																																																																											1
ACTCCG	1																																																																											1
ACTGAA	1																																																																											1
ACTGTG	1																																																																											1
ACTTCA	1																																																																											1
AGACAG							1																																																																					1
AGAGGA	1																																																																											1
AGCGGG	1																																																																											1
AGGCGA	1																																																																											1
AGGGAG	2																																																																											2
AGGGCG	1																																																																											1
AGGGGG	1																																																																											1
AGTACT	1																																																																											1
AGTCAA	1																																																																											1
AGTCCT	1																																																																											1
AGTGAC		1																																																																										1
AGTGAT	1																																																																											1
AGTGCC	2																																																																											2
AGTGGT	1																																																																											1
AGTGTC	1																																																																											1
AGTTAA	3																																																																											3
ATAAAA	1																																																																											1
ATAAAC	1																																																																											1
ATACAC	1																																																																											1
ATAGAA	1																																																																											1
ATAGCG		1																																																																										1
ATATGA	1																																																																											1
ATATTA	1																																																																											1
ATCAAA	1																																																																											1
ATCAGT	1																																																																											1
ATCCGC	1																																																																											1
ATGGAC	1																																																																											1
ATGGAT	1																																																																											1
ATGGCT	1																																																																											1
ATGGTA	1																																																																											1
ATGTCG		1																																																																										1
ATGTGA	1																																																																											1
ATGTTC	1																																																																											1
ATTACC	1																																																																											1
ATTAGA	2																																																																											2
ATTCAA	3																																																																											3
ATTGAC	1																																																																											1
ATTGTT	1																																																																											1
ATTTAT	1																																																																											1
ATTTCA		1																																																																										1
ATTTGA		1																																																																										1
CAACAG			1																																																																									1
CAACTT	1																																																																											1
CAAGAC	4																																																																											4
CAAGGG	1																																																																											1
CACCCT		1	1																																																																									2
CACCGA		1																																																																										1
CACCTG	1																																																																											1
CACGAG	1																																																																											1
CACGGA	1																																																																											1
CACTAT	1																																																																											1
CACTGT		1																																																																										1
CACTTG	1																																																																											1
CAGCTC	1																																																																											1
CAGTAC		1																																																																										1
CAGTAG	1																																																																											1
CATAAA	1																																																																											1
CATAAT	1																																																																											1
CATAGA		1																																																																										1
CATCGC	1																																																																											1
CATTAC	1																																																																											1
CATTCG	1																																																																											1
CCACTC	1																																																																											1
CCCCTA	1																																																																											1
CCCGCG	1																																																																											1
CCCTCG	2																																																																											2
CCCTCT	1																																																																											1
CCCTTT	1				1																																																																							2
CCGACA	1																																																																											1
CCGAGC			1																																																																									1
CCGGGT		1																																																																										1
CCGTAG			1																																																																									1
CCGTCG	1																																																																											1
CCGTTT	1																																																																											1
CCTACC	1																																																																											1
CCTAGA	1																																																																											1
CCTCAA	1																																																																											1
CCTCAC		1																																																																										1
CCTCGG	1																																																																											1
CCTCTA	1																																																																											1
CCTCTC							1																																																																					1
CCTGTT	2																																																																											2
CCTTCA		1																																																																										1
CGACGC	1																																																																											1
CGAGGG	1						1																																																																					2
CGAGTG	1																																																																											1
CGATGA	1																																																																											1
CGCACA					1																																																																							1
CGCCAA	1																																																																											1
CGCCCG	2																																																																											2
CGCTAC	2																																																																											2
CGCTCG	1																																																																											1
CGCTCT	2				1																																																																							3
CGGAAA	1																																																																											1
CGGAAC		1																																																																										1
CGGAGC	1																																																																											1
CGGCAC		1																																																																										1
CGGGAC	1																																																																											1
CGGGCC	1																																																																											1
CGGTAT			1																																																																									1
CGTACT	1																																																																											1
CGTCCA	1																																																																											1
CGTGCG	3																																																																											3
CGTTCA	1																																																																											1
CGTTGG	1																																																																											1
CTATAC			1																																																																									1
CTCACA	1																																																																											1
CTCATG	1																																																																											1
CTCCAA	1																																																																											1
CTCCCG	1																																																																											1
CTCCCT	1																																																																											1
CTCCGG	1																																																																											1
CTCCTT	1																																																																											1
CTCTCC							1																																																																					1
CTCTCG	2				1																																																																							3
CTGACA	1																																																																											1
CTGAGT	1																																																																											1
CTGCGA	1																																																																											1
CTGGGA	1																																																																											1
CTGTCA	3	1																																																																										4
CTGTCG				1																																																																								1
CTTACA	1																																																																											1
CTTCTG	1																																																																											1
CTTGTT	1																																																																											1
GAATCA	1																																																																											1
GACAGC			1																																																																									1
GACCCG					1																																																																							1
GAGAAG	1																																																																											1
GAGAGG	2																																																																											2
GAGAGT		1																																																																										1
GAGCAC			1																																																																									1
GAGCGA	1																																																																											1
GAGCTG	1																																																																											1
GAGGCG							1																																																																					1
GAGGGA	1																																																																											1
GAGGGC	1																																																																											1
GAGGGT	1																																																																											1
GATACG	1																																																																											1
GATGGT		2																																																																										2
GATTAT		1																																																																										1
GCACGA	1																																																																											1
GCACGG		1																																																																										1
GCCACT	1																																																																											1
GCCCTC	2	2																																																																										4
GCCGGA		1																																																																										1
GCCGGG	1	1																																																																										2
GCCGTG	1																																																																											1
GCCTCC	1																																																																											1
GCGACC	1																																																																											1
GCGAGT	1																																																																											1
GCGCAC	3																																																																											3
GCGGAT	1																																																																											1
GCGGCA			1																																																																									1
GCGGGG	1																																																																											1
GCGTGT	1																																																																											1
GCGTTG	1																																																																											1
GCTCTC	1			1																																																																								2
GCTGTC	1																																																																											1
GCTGTG	1																																																																											1
GCTTTA	1																																																																											1
GGAACT	1																																																																											1
GGACGG		1																																																																										1
GGAGAG			1																																																																									1
GGAGGT	1	1																																																																										2
GGATTT	1																																																																											1
GGCAGC			1																																																																									1
GGCGCG	1																																																																											1
GGCGGT	1																																																																											1
GGCGTC			1																																																																									1
GGCTGG	1																																																																											1
GGCTTT	1																																																																											1
GGGACG	1			1																																																																								2
GGGAGA			1																																																																									1
GGGAGG		1																																																																										1
GGGCGA	2																																																																											2
GGGGAC							1																																																																					1
GGGGCA	1																																																																											1
GGGGCT	1																																																																											1
GGTAAC	1																																																																											1
GGTACG	1																																																																											1
GGTAGT	1																																																																											1
GGTATC	1																																																																											1
GGTCAG	1																																																																											1
GGTCCG	1				1																																																																							2
GGTCGT	1																																																																											1
GGTCTT	2																																																																											2
GGTGAG		1																																																																										1
GGTGCG	1																																																																											1
GGTGTG	1																																																																											1
GTACGA	1																																																																											1
GTACGT	1																																																																											1
GTACTC	1																																																																											1
GTCACT		1																																																																										1
GTCATA	1																																																																											1
GTCCCC	1																																																																											1
GTCCTC	1																																																																											1
GTCGCT	1																																																																											1
GTCGGA	1																																																																											1
GTCTTG	4	2																																																																										6
GTGAGA	1																																																																											1
GTGCCT							1																																																																					1
GTGCGC	1	1																																																																										2
GTGCTG	2																																																																											2
GTGGAC	1																																																																											1
GTGGGT	1																																																																											1
GTGGTC	1																																																																											1
GTGTCA	1																																																																											1
GTGTGA	1																																																																											1
GTGTGG	1																																																																											1
GTGTTA	1																																																																											1
GTTCAA	1																																																																											1
GTTCTC	1																																																																											1
GTTCTT	1																																																																											1
GTTTAA	1																																																																											1
GTTTAT	4																																																																											4
GTTTGT	1																																																																											1
GTTTTA	1																																																																											1
GTTTTC	1																																																																											1
TAAAAT	1																																																																											1
TAAAGC	1																																																																											1
TAACGT	1																																																																											1
TAACTA	1																																																																											1
TAAGAA	1	1																																																																										2
TACCAC	1																																																																											1
TACCAG	1																																																																											1
TACCGA			1																																																																									1
TACGAG	1																																																																											1
TACGTG				1																																																																								1
TACTAG	1																																																																											1
TACTCA	1																																																																											1
TACTCT	1																																																																											1
TAGCGT	2																																																																											2
TAGTCG	1																																																																											1
TATAGC	1																																																																											1
TATCGC		1																																																																										1
TATCGG	1																																																																											1
TATTCA		1																																																																										1
TCAAAT		1																																																																										1
TCAACG	1																																																																											1
TCAATG		1																																																																										1
TCAATT	1																																																																											1
TCACAC	1																																																																											1
TCACAT											1																																																																	1
TCACCC	1		1																																																																									2
TCAGGG	1																																																																											1
TCATAT		1																																																																										1
TCCAAT	2																																																																											2
TCCCAA		1																																																																										1
TCCCAC	1																																																																											1
TCCGGA	1																																																																											1
TCCTAT	1																																																																											1
TCGATA	1																																																																											1
TCGGAG	1																																																																											1
TCTCCC	1																																																																											1
TCTCGC	1																																																																											1
TCTCGG		2																																																																										2
TCTCTT	1																																																																											1
TCTGAT	1																																																																											1
TCTGCC			1																																																																									1
TCTTTC			1																																																																									1
TCTTTT	1																																																																											1
TGACAG	1																																																																											1
TGACGC	1																																																																											1
TGACGG	1																																																																											1
TGAGTG				1																																																																								1
TGCGCG	1																																																																											1
TGCGGA	1																																																																											1
TGCTGG		1																																																																										1
TGGACC				1																																																																								1
TGGAGC	1																																																																											1
TGGGGC	1																																																																											1
TGGTCT		1																																																																										1
TGTACT	1																																																																											1
TGTCAA	1	1																																																																										2
TGTCAC	1																																																																											1
TGTCAG	1																																																																											1
TGTCGG	1																																																																											1
TGTTCG	1																																																																											1
TGTTTC	1																																																																											1
TTAAAA	2																																																																											2
TTAATA	2																																																																											2
TTAGTG	1																																																																											1
TTATAT	1																																																																											1
TTATTC	1																																																																											1
TTATTT	1																																																																											1
TTCAAA	2																																																																											2
TTCCAA	1																																																																											1
TTCCGA	1																																																																											1
TTCGAC			1																																																																									1
TTCTAC	1																																																																											1
TTCTCT	1																																																																											1
TTCTGA	1																																																																											1
TTCTGG	1																																																																											1
TTCTTG	1	1																																																																										2
TTGAAT	1																																																																											1
TTGACA	2																																																																											2
TTGACG	2																																																																											2
TTGAGT	1																																																																											1
TTGCCG	1																																																																											1
TTGGGG	1																																																																											1
TTGGTG	1																																																																											1
TTGTCT	1																																																																											1
TTGTTC	1																																																																											1
TTTAAA	3																																																																											3
TTTATT	2																																																																											2
TTTCCT										1																																																																		1
TTTCGG	2																																																																											2
TTTCTT	1																																																																											1
TTTGAA	7	1	1																																																																									9
TTTGAC	2																																																																											2
TTTGAG	1																																																																											1
TTTGCA	1																																																																											1
TTTGTT	1																																																																											1
TTTTAG	1																																																																											1
TTTTAT	2																																																																											2
TTTTCT	1																																																																											1
TTTTGA	2																																																																											2
TTTTGC	1																																																																											1
TTTTTA	2																																																																											2
TTTTTC	2																																																																											2
TTTTTG	1																																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	16	11	17	11	6	5	7	6	7	4	2	3		1	3		1	2		2	1	1	1	7			1			2	1					1			2						1		1											1	124
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	7	7	3	5	8	6	13	1	5	3	5	1	3	3	3	1	4	1	1	1	1	3		3	1	2	3		1		1			2								1		1									1					109
AC/GT	-	-	-	189	104	54	46	37	22	21	8	9	6	3	2	3	2		4		2	2	1		1	2	1	1			1	1			1													1																												524
AG/CT	-	-	-	355	231	127	79	62	27	19	18	12	8	3	5	5	2	3	1	5	1	3	1	1					1																																															969
AT/AT	-	-	-	394	190	88	75	49	43	28	16	15	12	6	5	4	4	1	1	1			1				1																																																	934
CG/CG	-	-	-	10	1	1	1			1																																																																		14
AAC/GTT	-	-	25	6	3	1																																																																						35
AAG/CTT	-	-	71	19	5	2																																																																						97
AAT/ATT	-	-	160	52	23	7	4	3				1																																																																250
ACC/GGT	-	-	10	6	4		1		1	1																																																																		23
ACG/CGT	-	-	8		1																																																																							9
ACT/AGT	-	-	33	9	2	1		2																																																																				47
AGC/CTG	-	-	9	6		1																																																																						16
AGG/CCT	-	-	14	4	1	1																																																																						20
ATC/ATG	-	-	63	28	8	2																																																																						101
CCG/CGG	-	-	19	4	3	2																																																																						28
AAAC/GTTT	-	85	10	6	2		1		2																																																																			106
AAAG/CTTT	-	61	13	3							1																																																																	78
AAAT/ATTT	-	218	31	19	3																																																																							271
AACC/GGTT	-	1	1																																																																									2
AACG/CGTT	-	2																																																																										2
AACT/AGTT	-	4	1	1																																																																								6
AAGC/CTTG	-	6																																																																										6
AAGG/CCTT	-	7		1																																																																								8
AAGT/ACTT	-	9		1	1																																																																							11
AATC/ATTG	-	15	2	1																																																																								18
AATG/ATTC	-	18	9	1			1																																																																					29
AATT/AATT	-	17	4																																																																									21
ACAG/CTGT	-	76	20	4		2	2		1																																																																			105
ACAT/ATGT	-	52	13	3	1	1	1																																																																					71
ACCC/GGGT	-	1																																																																										1
ACCG/CGGT	-	3	2		1																																																																							6
ACCT/AGGT	-	6	3																																																																									9
ACGC/CGTG	-	6		1		1			1																																																																			9
ACGG/CCGT	-	2	3																																																																									5
ACGT/ACGT	-	3																																																																										3
ACTC/AGTG	-	9		1		1	1																																																																					12
ACTG/AGTC	-	21	9	4	1	1																																																																						36
AGAT/ATCT	-	13	4	1	1	2		1																																																																				22
AGCG/CGCT	-	3	1																																																																									4
AGCT/AGCT	-	2																																																																										2
AGGC/CCTG	-	1	1																																																																									2
AGGG/CCCT	-	4	1																																																																									5
ATCC/ATGG	-	6	2		1	1																																																																						10
ATCG/ATCG	-	2																																																																										2
ATGC/ATGC	-	1	1																																																																									2
AAAAC/GTTTT	34	1																																																																										35
AAAAG/CTTTT	54																																																																											54
AAAAT/ATTTT	216	8	2	1																																																																								227
AAACC/GGTTT	13	1				1																																																																						15
AAACG/CGTTT	6	1																																																																										7
AAACT/AGTTT	18	3																																																																										21
AAAGC/CTTTG	15																																																																											15
AAAGG/CCTTT	14	2																																																																										16
AAAGT/ACTTT	16	1	1																																																																									18
AAATC/ATTTG	37	9	2																																																																									48
AAATG/ATTTC	32	3	1				1																																																																					37
AAATT/AATTT	117	2																																																																										119
AACAC/GTGTT	7	2			1																																																																							10
AACAG/CTGTT	8	1																																																																										9
AACAT/ATGTT	15																																																																											15
AACCC/GGGTT	4																																																																											4
AACCG/CGGTT	15	3	3																																																																									21
AACCT/AGGTT	90	35	29	13	21	24	17	31	14	10	15	5	7		1																																																													312
AACGC/CGTTG		1																																																																										1
AACGG/CCGTT	3																																																																											3
AACGT/ACGTT	10	2	1																																																																									13
AACTC/AGTTG	5																																																																											5
AACTG/AGTTC	16																																																																											16
AACTT/AAGTT	7																																																																											7
AAGAC/CTTGT	7	1																																																																										8
AAGAG/CTCTT	19	1																																																																										20
AAGAT/ATCTT	7																																																																											7
AAGCC/CTTGG	5	1																																																																										6
AAGCG/CGCTT	2																																																																											2
AAGCT/AGCTT	4																																																																											4
AAGGC/CCTTG	4																																																																											4
AAGGG/CCCTT	5	2																																																																										7
AAGGT/ACCTT	7	1	1																																																																									9
AAGTC/ACTTG	7		1																																																																									8
AAGTG/ACTTC	10																																																																											10
AATAC/ATTGT	37	3	2																																																																									42
AATAG/ATTCT	32	6	2																																																																									40
AATAT/ATATT	96	1	1																																																																									98
AATCC/ATTGG	11																																																																											11
AATCG/ATTCG	27																																																																											27
AATCT/AGATT	13	1	2	1	1																																																																							18
AATGC/ATTGC	2																																																																											2
AATGG/ATTCC	24	9	3	4	1	2	1	1																																																																				45
AATGT/ACATT	22	1																																																																										23
AATTC/AATTG	21	4		1	1																																																																							27
ACACC/GGTGT	3	2																																																																										5
ACACG/CGTGT	8	1		1																																																																								10
ACACT/AGTGT	10	2		1																																																																								13
ACAGC/CTGTG	2																																																																											2
ACAGG/CCTGT	6																																																																											6
ACAGT/ACTGT	11	2																																																																										13
ACATC/ATGTG	9	3		1																																																																								13
ACATG/ATGTC	15																																																																											15
ACCAG/CTGGT	1	1																																																																										2
ACCAT/ATGGT	6																																																																											6
ACCCC/GGGGT	3																																																																											3
ACCCG/CGGGT	1																																																																											1
ACCCT/AGGGT	7																																																																											7
ACCGC/CGGTG	2																																																																											2
ACCGG/CCGGT	1																																																																											1
ACCGT/ACGGT	2																																																																											2
ACCTC/AGGTG	5																																																																											5
ACCTG/AGGTC	1																																																																											1
ACGAG/CGTCT	6																																																																											6
ACGAT/ATCGT	12	1																																																																										13
ACGCC/CGTGG	1	1																																																																										2
ACGCG/CGCGT	4																																																																											4
ACGCT/AGCGT	3																																																																											3
ACGGC/CCGTG			1																																																																									1
ACGGG/CCCGT	63	6	1	3	1																																																																							74
ACGTC/ACGTG	7	2	1																																																																									10
ACTAG/AGTCT	5																																																																											5
ACTAT/AGTAT	18	1																																																																										19
ACTCC/AGTGG	9		1				1																																																																					11
ACTCT/AGAGT	5	1																																																																										6
ACTGC/AGTGC	6	1	1																																																																									8
ACTGG/AGTCC	5																																																																											5
AGAGG/CCTCT	7	2																																																																										9
AGATC/ATCTG	9	1																																																																										10
AGATG/ATCTC	6	1																																																																										7
AGCAT/ATGCT	1																																																																											1
AGCCC/CTGGG	1																																																																											1
AGCCG/CGGCT		1																																																																										1
AGCCT/AGGCT	3																																																																											3
AGCGC/CGCTG	1																																																																											1
AGCGG/CCGCT	3		1																																																																									4
AGCTC/AGCTG	5																																																																											5
AGGAT/ATCCT	5	1																																																																										6
AGGCC/CCTGG	3																																																																											3
AGGCG/CCTCG	6	1																																																																										7
AGGGG/CCCCT	7																																																																											7
ATATC/ATATG	9																																																																											9
ATCCC/ATGGG	4																																																																											4
ATCCG/ATCGG	2																																																																											2
ATCGC/ATGCG	6	1																																																																										7
ATGCC/ATGGC	2			1																																																																								3
CCCCG/CGGGG	1																																																																											1
CCCGG/CCGGG	1																																																																											1
CCGCG/CGCGG	16																																																																											16
AAAAAC/GTTTTT	3																																																																											3
AAAAAG/CTTTTT	6																																																																											6
AAAAAT/ATTTTT	12																																																																											12
AAAACG/CGTTTT	1																																																																											1
AAAACT/AGTTTT	2																																																																											2
AAAAGC/CTTTTG	1																																																																											1
AAAAGG/CCTTTT										1																																																																		1
AAAAGT/ACTTTT	1																																																																											1
AAAATC/ATTTTG	3																																																																											3
AAAATG/ATTTTC	1																																																																											1
AAAATT/AATTTT	5																																																																											5
AAACAC/GTGTTT	1																																																																											1
AAACAG/CTGTTT	1																																																																											1
AAACAT/ATGTTT	7																																																																											7
AAACCG/CGGTTT	2																																																																											2
AAACGG/CCGTTT	3																																																																											3
AAACGT/ACGTTT	1																																																																											1
AAACTC/AGTTTG	2																																																																											2
AAACTG/AGTTTC	1																																																																											1
AAACTT/AAGTTT	1																																																																											1
AAAGAC/CTTTGT	1																																																																											1
AAAGAG/CTCTTT	2		1																																																																									3
AAAGCC/CTTTGG	1																																																																											1
AAAGCT/AGCTTT	2																																																																											2
AAAGGG/CCCTTT	1				1																																																																							2
AAAGGT/ACCTTT	1																																																																											1
AAAGTC/ACTTTG	3																																																																											3
AAAGTT/AACTTT	4																																																																											4
AAATAC/ATTTGT		1	1																																																																									2
AAATAG/ATTTCT	1																																																																											1
AAATAT/ATATTT	2																																																																											2
AAATCC/ATTTGG	2																																																																											2
AAATGC/ATTTGC	1																																																																											1
AAATTC/AATTTG	14	3	1																																																																									18
AAATTG/AATTTC	1	1																																																																										2
AAATTT/AAATTT	6																																																																											6
AACAAG/CTTGTT	5	1																																																																										6
AACAAT/ATTGTT	1																																																																											1
AACACC/GGTGTT	2																																																																											2
AACACG/CGTGTT	1																																																																											1
AACACT/AGTGTT	2																																																																											2
AACAGC/CTGTTG			1																																																																									1
AACAGG/CCTGTT	2																																																																											2
AACATC/ATGTTG		1																																																																										1
AACATG/ATGTTC	1																																																																											1
AACATT/AATGTT		1																																																																										1
AACCAG/CTGGTT	1																																																																											1
AACCCC/GGGGTT	1																																																																											1
AACCGG/CCGGTT		1																																																																										1
AACCTC/AGGTTG	1																																																																											1
AACGAG/CGTTCT	1																																																																											1
AACGCC/CGTTGG	3																																																																											3
AACGCT/AGCGTT	2																																																																											2
AACGGC/CCGTTG	1																																																																											1
AACGGT/ACCGTT	1																																																																											1
AACGTC/ACGTTG	3																																																																											3
AACGTG/ACGTTC	2																																																																											2
AACGTT/AACGTT	1																																																																											1
AACTAC/AGTTGT	1																																																																											1
AACTAT/AGTTAT	1																																																																											1
AACTCC/AGTTGG	1																																																																											1
AACTGG/AGTTCC	1																																																																											1
AACTTC/AAGTTG	2																																																																											2
AACTTG/AAGTTC	1																																																																											1
AAGAAT/ATTCTT	2	1																																																																										3
AAGACC/CTTGGT	11	3																																																																										14
AAGACT/AGTCTT	1																																																																											1
AAGAGG/CCTCTT	1																																																																											1
AAGAGT/ACTCTT	1																																																																											1
AAGCAG/CTGCTT	1																																																																											1
AAGGAG/CCTTCT	2																																																																											2
AAGGCG/CCTTCG	1																																																																											1
AAGGGC/CCCTTG	1																																																																											1
AAGGTG/ACCTTC		1																																																																										1
AAGTAC/ACTTGT	1																																																																											1
AAGTAG/ACTTCT	1																																																																											1
AAGTAT/ACTTAT	1																																																																											1
AAGTCG/ACTTCG			1																																																																									1
AAGTGC/ACTTGC	1																																																																											1
AAGTGT/ACACTT	1																																																																											1
AATAGG/ATTCCT	1																																																																											1
AATATG/ATATTC	1	2																																																																										3
AATATT/AATATT	3																																																																											3
AATCAG/ATTCTG	3																																																																											3
AATCAT/ATGATT	1	1																																																																										2
AATCCC/ATTGGG		1																																																																										1
AATCCT/AGGATT	1																																																																											1
AATCGG/ATTCCG	1																																																																											1
AATGCG/ATTCGC	1																																																																											1
AATGGT/ACCATT	3																																																																											3
AATGTC/ACATTG	5	2																																																																										7
AATGTG/ACATTC	1										1																																																																	2
AATTAC/AATTGT	1																																																																											1
AATTAG/AATTCT	2																																																																											2
AATTAT/AATTAT	1																																																																											1
AATTCC/AATTGG	4																																																																											4
ACACAT/ATGTGT	1							1																																																																				2
ACACCC/GGGTGT	3																																																																											3
ACACCG/CGGTGT	2	1																																																																										3
ACACGC/CGTGTG	1				1																																																																							2
ACACGG/CCGTGT	1																																																																											1
ACACGT/ACGTGT	1			1																																																																								2
ACACTC/AGTGTG	3			1																																																																								4
ACACTG/AGTGTC	4																																																																											4
ACAGAG/CTCTGT							1																																																																					1
ACAGCC/CTGTGG	1																																																																											1
ACAGCG/CGCTGT	2		1	1																																																																								4
ACAGGC/CCTGTG							1																																																																					1
ACAGTC/ACTGTG	1																																																																											1
ACAGTG/ACTGTC	6	4																																																																										10
ACATAG/ATGTCT		1																																																																										1
ACATCG/ATGTCG		1																																																																										1
ACATGG/ATGTCC	1																																																																											1
ACATGT/ACATGT	1																																																																											1
ACCACG/CGTGGT	2																																																																											2
ACCACT/AGTGGT	3																																																																											3
ACCAGC/CTGGTG	2	1																																																																										3
ACCAGT/ACTGGT	1	1																																																																										2
ACCATC/ATGGTG		2																																																																										2
ACCCCT/AGGGGT	2																																																																											2
ACCCGC/CGGGTG	1																																																																											1
ACCCGG/CCGGGT	1	1			2																																																																							4
ACCCGT/ACGGGT	2																																																																											2
ACCCTC/AGGGTG	2	3	2																																																																									7
ACCCTG/AGGGTC	2																																																																											2
ACCGAG/CGGTCT		2																																																																										2
ACCGAT/ATCGGT	2		2																																																																									4
ACCGCC/CGGTGG	2																																																																											2
ACCGCG/CGCGGT	1																																																																											1
ACCGCT/AGCGGT	2																																																																											2
ACCGGC/CCGGTG		1																																																																										1
ACCGGG/CCCGGT	1																																																																											1
ACCGTC/ACGGTG	1																																																																											1
ACCTAG/AGGTCT	1																																																																											1
ACCTAT/AGGTAT			1																																																																									1
ACCTCC/AGGTGG	2	1																																																																										3
ACCTCT/AGAGGT	1																																																																											1
ACCTGC/AGGTGC	1																																																																											1
ACCTGG/AGGTCC	1			1																																																																								2
ACGACT/AGTCGT	1																																																																											1
ACGAGC/CGTGCT	2		1																																																																									3
ACGAGG/CCTCGT	1																																																																											1
ACGAGT/ACTCGT	4																																																																											4
ACGATG/ATCGTC	1																																																																											1
ACGCCG/CGGCGT	1		1																																																																									2
ACGCGC/CGCGTG	8	1																																																																										9
ACGCTG/AGCGTC	1																																																																											1
ACGGAT/ATCCGT	1																																																																											1
ACGGCC/CCGTGG	1																																																																											1
ACGGCG/CCGTCG	1																																																																											1
ACGGCT/AGCCGT			1																																																																									1
ACGGGC/CCCGTG		1																																																																										1
ACGGGG/CCCCGT	4	1		1			1																																																																					7
ACGTCC/ACGTGG	2																																																																											2
ACTAGG/AGTCCT	1																																																																											1
ACTAGT/ACTAGT	3																																																																											3
ACTATC/AGTGAT	2																																																																											2
ACTATG/AGTCAT	1																																																																											1
ACTCAG/AGTCTG	1																																																																											1
ACTCAT/AGTATG	1																																																																											1
ACTCCC/AGTGGG	2																																																																											2
ACTCCG/AGTCGG	3																																																																											3
ACTCGC/AGTGCG	2																																																																											2
ACTCTC/AGAGTG	1	1																																																																										2
ACTGAT/AGTATC	1																																																																											1
ACTGCC/AGTGGC	1																																																																											1
ACTGCG/AGTCGC	1																																																																											1
ACTGCT/AGCAGT	1																																																																											1
ACTGGC/AGTGCC	2																																																																											2
ACTGGG/AGTCCC	1																																																																											1
AGAGCG/CGCTCT	7			1	2																																																																							10
AGAGGC/CCTCTG			1																																																																									1
AGAGGG/CCCTCT	8		2				2																																																																					12
AGCATG/ATGCTC	1																																																																											1
AGCCAT/ATGGCT	1																																																																											1
AGCCCC/CTGGGG	3																																																																											3
AGCCCG/CGGGCT			1																																																																									1
AGCCGG/CCGGCT	2	1																																																																										3
AGCGAT/ATCGCT		2																																																																										2
AGCGCG/CGCGCT	1																																																																											1
AGCGGC/CCGCTG			2																																																																									2
AGCGGG/CCCGCT	2																																																																											2
AGCTAT/AGCTAT	1																																																																											1
AGCTCC/AGCTGG	3																																																																											3
AGGCCG/CCTCGG	1																																																																											1
AGGCGG/CCGCCT	1						1																																																																					2
AGGGCG/CCCTCG	9	2					1																																																																					12
AGGGGC/CCCCTG	1																																																																											1
AGGGGG/CCCCCT	1	1																																																																										2
ATATCC/ATATGG	1																																																																											1
ATATCG/ATATCG	1																																																																											1
ATCCGC/ATGCGG	3																																																																											3
ATCCGG/ATCCGG	1																																																																											1
ATCGCC/ATGGCG	1																																																																											1
CCCCCG/CGGGGG	1																																																																											1
CCCCGG/CCGGGG	1	1																																																																										2
CCCGCG/CGCGGG	4																																																																											4
CCCGGG/CCCGGG	1																																																																											1
