Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018245035.1/fasta/hub_GCA_018245035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              108681
Total size of examined sequences (bp):           32370099
Total number of identified SSRs:                 3598
Number of SSR containing sequences:              3150
Number of sequences containing more than 1 SSR:  320
Number of SSRs present in compound formation:    342


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	139
2	1342
3	310
4	505
5	1072
6	230

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	1	3	2	2	1	1	3	1	1	1		2	1			1				1																															1	29
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3	4	2		1	1	3		1	4	1				1		1	1	1					1																												27
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	3	2	3	3	4	1	3		2		1	4	2	1			2		2	1		1			1			1			1	1																				47
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	4	2	5	1	2	1	3	1	1		1	1	1	1		3		1							1				1				1																			36
AC	-	-	-	34	15	12	4	1	1	4		1	1	1			1			1																1																																		77
AG	-	-	-	34	34	10	6	6	2	1	1		2				2																																																					98
AT	-	-	-	121	51	27	24	18	6	10	3	3	7	2	2	1		1		1	1		1																																															279
CA	-	-	-	25	14	5	2		1	3	1											1																																																52
CG	-	-	-	3																																																																		3
CT	-	-	-	44	25	17	8	7	1	3	3	1	1	3	1		3			1							1	1																																										120
GA	-	-	-	23	20	16	4	2	4	2	3	1	2	1			1															1																																						80
GC	-	-	-	2																																																																		2
GT	-	-	-	25	13	5	1	2	2	3		1	1					1																																																				54
TA	-	-	-	110	46	43	27	9	10	10	6	8	7	2	4	2	1	2		2																																																		289
TC	-	-	-	80	38	28	11	12	6	4	1	2	1	1								1				1																																												186
TG	-	-	-	40	19	11	8	3	5	4	1	2	1	1			1				1		1	1											1	2																																		102
AAC	-	-	1																																																																			1
AAG	-	-	6	2	1																																																																	9
AAT	-	-	19	3	4	2																																																																28
ACA	-	-	3		1																																																																	4
ACC	-	-		1																																																																		1
ACT	-	-	2	2	1																																																																	5
AGA	-	-	3																																																																			3
AGC	-	-	1																																																																			1
AGG	-	-	2																																																																			2
AGT	-	-	4	1																																																																		5
ATA	-	-	13		1																																																																	14
ATC	-	-	6	1																																																																		7
ATG	-	-	4		1																																																																	5
ATT	-	-	19	4					1																																																													24
CAA	-	-	1																																																																			1
CAG	-	-	1																																																																			1
CAT	-	-	3	1					1																																																													5
CCA	-	-	1	1																																																																		2
CCG	-	-			1																																																																	1
CCT	-	-	2																																																																			2
CGC	-	-						1																																																														1
CGT	-	-	1																																																																			1
CTA	-	-	5	2	1		1																																																															9
CTC	-	-	1																																																																			1
CTG	-	-	1	1																																																																		2
CTT	-	-	4	2		1																																																																7
GAA	-	-	6		1																																																																	7
GAG	-	-	1			1																																																																2
GAT	-	-	5	3	1																																																																	9
GCA	-	-	1			1																																																																2
GCC	-	-	1																																																																			1
GCG	-	-	1																																																																			1
GCT	-	-	2	2		1																																																																5
GGA	-	-		1																																																																		1
GGT	-	-	1																																																																			1
GTA	-	-	3	1	1																																																																	5
GTG	-	-		1																																																																		1
TAA	-	-	4	1	1	2																																																																8
TAC	-	-	3	1	1																																																																	5
TAG	-	-	5	2	2	1	1																																																															11
TAT	-	-	18	3																																																																		21
TCA	-	-	14	8	1																																																																	23
TCC	-	-	1																																																																			1
TCG	-	-	1																																																																			1
TCT	-	-	6		1																																																																	7
TGA	-	-	8	2	1																																																																	11
TGC	-	-	2																																																																			2
TGG	-	-		1																																																																		1
TGT	-	-	1																																																																			1
TTA	-	-	18	7	3	1	1																																																															30
TTC	-	-	7	1																																																																		8
TTG	-	-	1	1	1																																																																	3
AAAC	-	8											1			1																																																						10
AAAG	-	5	1	1																																																																		7
AAAT	-	10	1	1																																																																		12
AACA	-	2																																																																				2
AACT	-	1																																																																				1
AAGA	-	3																																																																				3
AAGG	-	1																																																																				1
AATA	-	10	4	1																																																																		15
AATC	-	3																																																																				3
AATG	-	2																																																																				2
AATT	-	1																																																																				1
ACAA	-	6		1																																																																		7
ACAG	-	3	2		2																																																																	7
ACAT	-	3	1																																																																			4
ACCG	-	1																																																																				1
ACCT	-	1																																																																				1
ACGA	-	1																																																																				1
ACGC	-	1																																																																				1
ACGT	-	1																																																																				1
ACTA	-	1																																																																				1
ACTG	-	1				1																																																																2
AGAA	-	2	2																																																																			4
AGAC	-	3																																																																				3
AGCA	-	1	1																																																																			2
AGGT	-	1																																																																				1
AGTA	-	2																																																																				2
AGTC	-	1																																																																				1
AGTG	-	2																																																																				2
ATAA	-	8	2																																																																			10
ATAC	-	6	2																																																																			8
ATAG	-	1	1			1																																																																3
ATCA	-	1					1																																																															2
ATCT	-	3	1																																																																			4
ATGA	-	3																																																																				3
ATGG	-	1																																																																				1
ATGT	-	5	1	1																																																																		7
ATTA	-	5																																																																				5
ATTC	-	1			1																																																																	2
ATTG	-	3																																																																				3
ATTT	-	15	3																																																																			18
CAAA	-	6										1																																																										7
CAGA	-	5	3	2	1		1																																																															12
CATA	-	3	2																																																																			5
CATC	-	2																																																																				2
CCAT	-	2																																																																				2
CGAG	-	1																																																																				1
CGGA	-		1																																																																			1
CGTG	-			2		1																																																																3
CTCC	-	1																																																																				1
CTGT	-			1																																																																		1
CTTA	-	4																																																																				4
CTTC	-	2																																																																				2
CTTT	-	2				1																																																																3
GAAA	-	7																																																																				7
GAAG	-		1																																																																			1
GAAT	-	1																																																																				1
GACA	-	6	1		1																																																																	8
GACG	-		1	1																																																																		2
GACT	-	2																																																																				2
GAGG	-		1																																																																			1
GATA	-	1																																																																				1
GATC	-	1																																																																				1
GATG	-	3																																																																				3
GATT	-	1																																																																				1
GCAC	-	3																																																																				3
GCGT	-		1																																																																			1
GGAT	-	1																																																																				1
GGCG	-	1																																																																				1
GGCT	-	1																																																																				1
GGTA	-		1								1																																																											2
GGTC	-	2																																																																				2
GTAA	-	2	1																																																																			3
GTAC	-	2																																																																				2
GTAG	-									2																																																												2
GTAT	-	3	1		1																																																																	5
GTCA	-	1																																																																				1
GTCT	-	2	1																																																																			3
GTGA	-		1																																																																			1
GTGC	-	1																																																																				1
GTTC	-	1																																																																				1
GTTT	-	6	1																																																																			7
TAAA	-	25	3		1																																																																	29
TAAC	-	2																																																																				2
TACA	-	1	2		1																																																																	4
TAGA	-			1																																																																		1
TAGG	-	2					1																																																															3
TATC	-	3																																																																				3
TATG	-	7	4	1	1																																																																	13
TATT	-	12	3																																																																			15
TCAA	-	2	1																																																																			3
TCAG	-	4		2																																																																		6
TCAT	-	2																																																																				2
TCCA	-	1																																																																				1
TCGA	-	1																																																																				1
TCGG	-	1																																																																				1
TCGT	-	1		1																																																																		2
TCTA	-		1																																																																			1
TCTG	-	2																																																																				2
TCTT	-	4																																																																				4
TGAC	-			2																																																																		2
TGAT	-	3	1	1																																																																		5
TGCG	-				1																																																																	1
TGCT	-	1																																																																				1
TGGA	-	2																																																																				2
TGTA	-	1	2		1																																																																	4
TGTC	-	3	2	1	1																																																																	7
TGTT	-	5																																																																				5
TTAA	-	7																																																																				7
TTAC	-		1																																																																			1
TTAG	-			1	1																																																																	2
TTAT	-	13	3		1																																																																	17
TTCA	-	3	1																																																																			4
TTCC	-		1																																																																			1
TTCG	-	1																																																																				1
TTCT	-	2																																																																				2
TTGA	-		2																																																																			2
TTGC	-	1																																																																				1
TTGT	-	7																																																																				7
TTTA	-	23	5	3																																																																		31
TTTC	-	14	8	1																																																																		23
TTTG	-	10	2					1																																																														13
AAAAC	2																																																																					2
AAAAG	4																																																																					4
AAAAT	16																																																																					16
AAACA	1																																																																					1
AAACC	1																																																																					1
AAACG	1																																																																					1
AAACT	1																																																																					1
AAAGA	3																																																																					3
AAAGC	1																																																																					1
AAAGT	2																																																																					2
AAATA	12	4																																																																				16
AAATC	1																																																																					1
AAATG	1	1																																																																				2
AAATT	10																																																																					10
AACAA	4																																																																					4
AACAG	2																																																																					2
AACAT	1																																																																					1
AACCA	2																																																																					2
AACCT	9	5	5										1																																																									20
AACGA	1																																																																					1
AACGC	1																																																																					1
AACTC	1																																																																					1
AACTG	1																																																																					1
AACTT	2																																																																					2
AAGAA	6																																																																					6
AAGCA	2																																																																					2
AAGCT	1																																																																					1
AAGGT	1																																																																					1
AAGTC	1																																																																					1
AAGTG	1																																																																					1
AATAA	7																																																																					7
AATAC	1																																																																					1
AATAG			1																																																																			1
AATAT	2																																																																					2
AATCA	1	1																																																																				2
AATCC	3																																																																					3
AATCT	5																																																																					5
AATGA	2																																																																					2
AATGG	1																																																																					1
AATGT	1																																																																					1
AATTA	4																																																																					4
AATTC	3																																																																					3
AATTT	12	1																																																																				13
ACAAT	2		2																																																																			4
ACACA	2																																																																					2
ACACG	1																																																																					1
ACAGG	1																																																																					1
ACATA	1																																																																					1
ACCAG	1																																																																					1
ACCAT	1																																																																					1
ACCGA	1																																																																					1
ACCGC	1																																																																					1
ACCTA	3	2	1	3		1	1	1	1	1	2	2					1																																																					19
ACCTG	1																																																																					1
ACGAA	1																																																																					1
ACGAT	1																																																																					1
ACGGG	7	1			1	1																																																																10
ACGGT	1																																																																					1
ACGTA		1																																																																				1
ACGTG	2																																																																					2
ACGTT	2		1																																																																			3
ACTAC		1																																																																				1
ACTAG	1																																																																					1
ACTAT	1																																																																					1
ACTCC	1																																																																					1
ACTGT	1	1																																																																				2
ACTTA	2																																																																					2
ACTTC	1																																																																					1
ACTTG	1																																																																					1
ACTTT	2																																																																					2
AGAAA	2	1																																																																				3
AGAAC	2																																																																					2
AGAAG	2																																																																					2
AGACA	1																																																																					1
AGACT	1	1																																																																				2
AGAGG	1																																																																					1
AGATA	1																																																																					1
AGATG	1																																																																					1
AGCCT	1																																																																					1
AGCTC	1																																																																					1
AGGAA	1	1																																																																				2
AGGGA	1																																																																					1
AGGTA	1																																																																					1
AGGTT	9	3		4	2		1			2																																																												21
AGTAC	2																																																																					2
AGTAT	1																																																																					1
AGTGA	1																																																																					1
AGTGC	1																																																																					1
AGTTC	1																																																																					1
ATAAA	5																																																																					5
ATAAC	1																																																																					1
ATAAG	1	1																																																																				2
ATAAT	6																																																																					6
ATACA	6																																																																					6
ATAGA	1																																																																					1
ATAGG	1																																																																					1
ATATA	3																																																																					3
ATATG	1																																																																					1
ATATT	3																																																																					3
ATCAA	2	1																																																																				3
ATCAG	1																																																																					1
ATCCT	1																																																																					1
ATCGC	5																																																																					5
ATCGT	1																																																																					1
ATCTA	1																																																																					1
ATCTG	2																																																																					2
ATCTT	1																																																																					1
ATGAA	3																																																																					3
ATGAG	1																																																																					1
ATGAT	1																																																																					1
ATGCA	1																																																																					1
ATGGC	1																																																																					1
ATGGG	1																																																																					1
ATGTA	1																																																																					1
ATGTC	2																																																																					2
ATTAA	6	1																																																																				7
ATTAC	4																																																																					4
ATTAG	1																																																																					1
ATTAT	2																																																																					2
ATTCA	2																																																																					2
ATTCC	2																																																																					2
ATTCG	2																																																																					2
ATTCT	4																																																																					4
ATTGA	2																																																																					2
ATTGG	1																																																																					1
ATTGT	3																																																																					3
ATTTA	6																																																																					6
ATTTC	3																																																																					3
ATTTG	2																																																																					2
ATTTT	12																																																																					12
CAAAA	3																																																																					3
CAACA	1																																																																					1
CAATA	1																																																																					1
CAATT	2																																																																					2
CACAG	1																																																																					1
CACAT	2																																																																					2
CACCG	1																																																																					1
CACGA			1																																																																			1
CACGG	1			1																																																																		2
CACGT			1																																																																			1
CACTA	2																																																																					2
CACTT	1																																																																					1
CAGAA	2																																																																					2
CAGAG	1																																																																					1
CAGAT	1																																																																					1
CAGGA	1																																																																					1
CAGGT	1																																																																					1
CATAT	1																																																																					1
CATCT	1																																																																					1
CATTA	1	1																																																																				2
CATTG	1																																																																					1
CATTT	1		1																																																																			2
CCAAA				1																																																																		1
CCAGG	1																																																																					1
CCATC	1																																																																					1
CCATT	1																																																																					1
CCCAC	1																																																																					1
CCCGT		1																																																																				1
CCGCG	2																																																																					2
CCGTA	1																																																																					1
CCGTC	2	1																																																																				3
CCTAA	2	3			1	1	1	1	3	1		1																																																										14
CCTAC	1																																																																					1
CCTCG	1																																																																					1
CGAAA	2																																																																					2
CGCCC		1																																																																				1
CGCGC	1																																																																					1
CGGCA			1																																																																			1
CGGGA					1																																																																	1
CGGGT	1																																																																					1
CGTCC	8																																																																					8
CGTCG	1																																																																					1
CGTGT	1																																																																					1
CTAAC	7	2	4		1			1	1	1																																																												17
CTAAT	1																																																																					1
CTATC	1																																																																					1
CTATT	1																																																																					1
CTGAA	2																																																																					2
CTGCA	1																																																																					1
CTGCT	1																																																																					1
CTGTC	1			1																																																																		2
CTGTT	2																																																																					2
CTTAA		1																																																																				1
CTTAC		1																																																																				1
CTTAG	1																																																																					1
CTTCG	1																																																																					1
CTTCT	1																																																																					1
CTTGA	1																																																																					1
CTTGT	1																																																																					1
CTTTA	3																																																																					3
CTTTC	1																																																																					1
CTTTT	3	1																																																																				4
GAAAA	2																																																																					2
GAAAC	1																																																																					1
GAACA	1																																																																					1
GAACC	1																																																																					1
GAACG	1																																																																					1
GAAGA	2																																																																					2
GAATA	2																																																																					2
GAATC	1																																																																					1
GAATT	2																																																																					2
GACAA	1																																																																					1
GACAC	1																																																																					1
GACCC	1																																																																					1
GACCT	1																																																																					1
GACGA	1																																																																					1
GACGG		1		1																																																																		2
GACGT	1	1																																																																				2
GACTA	1																																																																					1
GAGAT	1																																																																					1
GAGGA		1																																																																				1
GATAC	1																																																																					1
GATAG	1																																																																					1
GATCA	2																																																																					2
GATGC	1																																																																					1
GATTA	1																																																																					1
GATTC	1																																																																					1
GATTG	3																																																																					3
GATTT	1																																																																					1
GCAAT	1																																																																					1
GCAGC	1																																																																					1
GCATC	1																																																																					1
GCCGC	1																																																																					1
GCCTA	1																																																																					1
GCGAC	1																																																																					1
GCGCA	1																																																																					1
GCGTC	1	1																																																																				2
GCGTG	1																																																																					1
GCTAA	1																																																																					1
GCTAG		1																																																																				1
GCTCA	1																																																																					1
GGACG	2																																																																					2
GGAGG	1																																																																					1
GGCTC	1	1																																																																				2
GGGAA	1																																																																					1
GGGAC	2	1																																																																				3
GGGGT	1																																																																					1
GGTAG	1																																																																					1
GGTGA	1																																																																					1
GGTTA	9	5	2		3	5	5	3	2	1	1	1	1																																																									38
GGTTC	4																																																																					4
GGTTG	1																																																																					1
GGTTT	1																																																																					1
GTACA	2																																																																					2
GTACT			1																																																																			1
GTATT	3																																																																					3
GTCAA	1																																																																					1
GTCAC	1																																																																					1
GTCCC	4	1																																																																				5
GTCCT	1								1																																																													2
GTCGG			1																																																																			1
GTCTA	1																																																																					1
GTCTT	1																																																																					1
GTGAA	1																																																																					1
GTGAC			1																																																																			1
GTGTC	2																																																																					2
GTGTT	1																																																																					1
GTTAG	14	7	2		3	2	1			1	1																																																											31
GTTAT	1																																																																					1
GTTCA	1																																																																					1
GTTCG	2	1																																																																				3
GTTCT	1																																																																					1
GTTGC		1																																																																				1
GTTGG	1																																																																					1
GTTTT	4																																																																					4
TAAAA	20	2																																																																				22
TAAAT	7																																																																					7
TAACA	1																																																																					1
TAACC	6	3		1	2	1	1				1	1																																																										16
TAACT	1																																																																					1
TAAGA	1																																																																					1
TAATA	5																																																																					5
TAATC		1																																																																				1
TAATT	6																																																																					6
TACAA		1																																																																				1
TACAG	3		1																																																																			4
TACCA	1																																																																					1
TACCG	1																																																																					1
TACGA	3																																																																					3
TACGG	1																																																																					1
TACGT	1	1																																																																				2
TACTA	2																																																																					2
TACTG	1																																																																					1
TACTT	1																																																																					1
TAGAA	1																																																																					1
TAGAC	1																																																																					1
TAGAG	1																																																																					1
TAGAT	1																																																																					1
TAGCT	1																																																																					1
TAGGT	8	2								1		1																																																										12
TAGTT	1	1																																																																				2
TATAA	2																																																																					2
TATAC	2																																																																					2
TATAG	1	1																																																																				2
TATAT	3																																																																					3
TATCC	2																																																																					2
TATCG	2																																																																					2
TATCT	2																																																																					2
TATGA	1																																																																					1
TATGG		1																																																																				1
TATTA	11	1																																																																				12
TATTC	2																																																																					2
TATTG	1																																																																					1
TATTT	10																																																																					10
TCAAA	3																																																																					3
TCAAT	1																																																																					1
TCACG	1																																																																					1
TCACT	1																																																																					1
TCATG	1																																																																					1
TCATT	2																																																																					2
TCCAA	2																																																																					2
TCCCG	5	2		1		1																																																																9
TCCTA	1																																																																					1
TCTAA	1																																																																					1
TCTAC	2																																																																					2
TCTAG	1																																																																					1
TCTCT	3																																																																					3
TCTGA	1																																																																					1
TCTGT	3																																																																					3
TCTTA	1																																																																					1
TCTTC	1																																																																					1
TCTTG	1																																																																					1
TCTTT	3																																																																					3
TGAAA	3																																																																					3
TGAAC	4	1																																																																				5
TGAAT	1																																																																					1
TGACA	2																																																																					2
TGACG	3																																																																					3
TGAGA	1																																																																					1
TGAGC	1																																																																					1
TGATC	1	1																																																																				2
TGATG	1																																																																					1
TGCTA	1																																																																					1
TGGAA	2																																																																					2
TGGAG	1																																																																					1
TGGCT	1																																																																					1
TGGGA	1																																																																					1
TGGTA	2																																																																					2
TGGTC	1																																																																					1
TGTAG	2																																																																					2
TGTAT	1																																																																					1
TGTCA	1																																																																					1
TGTGA	2																																																																					2
TGTGT	1																																																																					1
TGTTA	2																																																																					2
TGTTC	1																																																																					1
TGTTT	3																																																																					3
TTAAA	5																																																																					5
TTAAC	1																																																																					1
TTAAG	1																																																																					1
TTAAT	7																																																																					7
TTACA	5																																																																					5
TTACC	1																																																																					1
TTACG	4											1																																																										5
TTACT	1	1																																																																				2
TTAGA	1		1																																																																			2
TTAGC	1																																																																					1
TTAGG	8	3				4	1	2																																																														18
TTAGT	1	1																																																																				2
TTATA	4																																																																					4
TTATG	1																																																																					1
TTATT	10																																																																					10
TTCAA	1		1																																																																			2
TTCAG	2	1																																																																				3
TTCAT	1																																																																					1
TTCCA	2																																																																					2
TTCCG	1																																																																					1
TTCCT	1																																																																					1
TTCGA	3																																																																					3
TTCGC	2																																																																					2
TTCGG	3		1																																																																			4
TTCTA	2		1																																																																			3
TTCTG	4																																																																					4
TTCTT	2																																																																					2
TTGAA	3																																																																					3
TTGAC	1																																																																					1
TTGAG	2																																																																					2
TTGAT	1	1																																																																				2
TTGCT	1																																																																					1
TTGGA	1																																																																					1
TTGTA	4		1																																																																			5
TTGTC	1																																																																					1
TTGTG	2																																																																					2
TTGTT	2																																																																					2
TTTAA	14	1																																																																				15
TTTAC	2																																																																					2
TTTAG	3																																																																					3
TTTAT	12																																																																					12
TTTCA	3																																																																					3
TTTCC	3																																																																					3
TTTCG	1	2																																																																				3
TTTCT	3		1																																																																			4
TTTGA	3																																																																					3
TTTGG	2	1																																																																				3
TTTGT	1																																																																					1
TTTTA	17																																																																					17
TTTTC	6	1	1				1																																																															9
TTTTG	3																																																																					3
AAAAAG	1																																																																					1
AAAAAT	1																																																																					1
AAAAGT	1																																																																					1
AAACAA	1																																																																					1
AAAGGC	1																																																																					1
AAATAG	1																																																																					1
AAATTC	3																																																																					3
AAATTT	1																																																																					1
AACAAA	1																																																																					1
AACGGG								1																																																														1
AACTGA	1																																																																					1
AAGAGT	1																																																																					1
AAGCAT	1																																																																					1
AAGTAA	1																																																																					1
AAGTAG			1																																																																			1
AATAAA	1																																																																					1
AATAGC		1																																																																				1
AATCAT	1																																																																					1
AATCTG	1																																																																					1
AATTAA	1																																																																					1
AATTAT	1																																																																					1
AATTTT	1																																																																					1
ACAATT	1																																																																					1
ACACAT			1																																																																			1
ACACCA	1																																																																					1
ACACCT	1																																																																					1
ACATAA		2																																																																				2
ACATAT		2																																																																				2
ACTACG	1																																																																					1
ACTCTG	1																																																																					1
ACTGTC	2																																																																					2
AGAGCC	1																																																																					1
AGAGGG			1				1																																																															2
AGCCGG	1																																																																					1
AGCGGA	1																																																																					1
AGCTAA	1																																																																					1
AGGCGA	1																																																																					1
AGGGAA	1																																																																					1
AGGGAG	1																																																																					1
AGGGTG		1																																																																				1
AGTCGC		1																																																																				1
AGTTCA	1																																																																					1
AGTTCT	2																																																																					2
ATACCT	1																																																																					1
ATAGGA	1																																																																					1
ATATGG	1																																																																					1
ATATTT	1																																																																					1
ATCAGT	1																																																																					1
ATCTAG	1																																																																					1
ATTCAA	1																																																																					1
ATTTGA		1																																																																				1
ATTTTA	1																																																																					1
ATTTTC	1																																																																					1
CAAATA	1																																																																					1
CAAGAC	1	2																																																																				3
CAATGT	1																																																																					1
CACAGG		1																																																																				1
CACCAA			1																																																																			1
CACTGA	1																																																																					1
CACTGT	1																																																																					1
CATTAC	1																																																																					1
CATTCG	1																																																																					1
CCACTA	1																																																																					1
CCAGCG	1																																																																					1
CCAGTG	1																																																																					1
CCATCG	1																																																																					1
CCCACT	1																																																																					1
CCCCCG	1																																																																					1
CCCTCG	1																																																																					1
CCCTGT	1																																																																					1
CCCTTC	1																																																																					1
CCGGTC		1																																																																				1
CCTCCA						1																																																																1
CCTTTC	1																																																																					1
CCTTTT									1																																																													1
CGAGAG		1																																																																				1
CGCACG	1																																																																					1
CGCCAG	1																																																																					1
CGGCCA					1																																																																	1
CGGGAC	1																																																																					1
CGGGGC	1																																																																					1
CGGTAG	1																																																																					1
CGGTGG	1																																																																					1
CGTCAC	1																																																																					1
CGTTTA	1																																																																					1
CTAAGT	1																																																																					1
CTCATA		1																																																																				1
CTCCCG								1																																																														1
CTCCCT			1																																																																			1
CTCTCC							1																																																															1
CTGCAG	1																																																																					1
CTGGCG	1																																																																					1
CTGTCA	1																																																																					1
CTTCCT	1																																																																					1
CTTCTA	1																																																																					1
CTTTTC										1																																																												1
CTTTTT	1																																																																					1
GAAAAA	1																																																																					1
GAAAGG	1																																																																					1
GAAATT	1																																																																					1
GAACGG			1																																																																			1
GAAGGA	1																																																																					1
GAAGTC	1																																																																					1
GACCTG	1																																																																					1
GAGAGG	1				1																																																																	2
GAGAGT			1																																																																			1
GAGCGA	1			1																																																																		2
GAGCGG	2																																																																					2
GAGCTG	1																																																																					1
GAGGGA	2							1																																																														3
GAGGGG		1																																																																				1
GATTCG	1																																																																					1
GATTCT	1																																																																					1
GATTTT	1																																																																					1
GCAAAT	1																																																																					1
GCACCT	1																																																																					1
GCAGCC	1																																																																					1
GCAGGC	1																																																																					1
GCATAC	1																																																																					1
GCGCGT	2				1																																																																	3
GCGCTG	1																																																																					1
GCGGGC			1																																																																			1
GCGTCG	1																																																																					1
GCTATC		1																																																																				1
GCTCGG	1																																																																					1
GCTTTG		1																																																																				1
GGAACG			1							1																																																												2
GGAGAG	1					1																																																																2
GGCAGA								1																																																														1
GGCGGT		1																																																																				1
GGGAAC	1																																																																					1
GGGACA	1																																																																					1
GGGAGA	1																																																																					1
GGGTGA				1																																																																		1
GGGTGT	1																																																																					1
GGTTGA	2																																																																					2
GTAAAA	1																																																																					1
GTATAC	1																																																																					1
GTATCT	1																																																																					1
GTCAAA	1																																																																					1
GTCATA	1																																																																					1
GTGTGA	1																																																																					1
GTGTGC	1																																																																					1
GTTTCG	1	1	1																																																																			3
TAAAAA	1																																																																					1
TAAATT	1																																																																					1
TAAGCT	1																																																																					1
TAAGTG	1																																																																					1
TACACG								1																																																														1
TAGGTA	1																																																																					1
TATTAC	1																																																																					1
TATTCG	1																																																																					1
TATTTG		1																																																																				1
TCAAAT					1																																																																	1
TCAATG	1																																																																					1
TCACCA	1																																																																					1
TCACTG	1																																																																					1
TCAGAT							1																																																															1
TCCAAA	1																																																																					1
TCCAAG	1																																																																					1
TCCTTT										1																																																												1
TCGAAA	1																																																																					1
TCGGTG		1																																																																				1
TCTCCC	1			1																																																																		2
TCTTAG	2																																																																					2
TGAATT		1																																																																				1
TGACAG	1																																																																					1
TGACAT	1																																																																					1
TGACGA	1																																																																					1
TGACGC	1																																																																					1
TGAGAG		1																																																																				1
TGCGGC	1																																																																					1
TGGAGA	1																																																																					1
TGGATG			1																																																																			1
TGTCAT	1																																																																					1
TGTGAG	1																																																																					1
TGTGCT	1																																																																					1
TGTTAT	1																																																																					1
TTAATA	1																																																																					1
TTAGCC	1																																																																					1
TTAGTT	1																																																																					1
TTATAT	1																																																																					1
TTCAAA	3																																																																					3
TTCACA	1																																																																					1
TTCATA	1																																																																					1
TTCATC	1																																																																					1
TTCCAT	1																																																																					1
TTCCCA	1																																																																					1
TTCGGT	1																																																																					1
TTCTCA	1																																																																					1
TTGACA	1																																																																					1
TTGACT	1																																																																					1
TTGGCG			1																																																																			1
TTTAAT	1																																																																					1
TTTCAT	1																																																																					1
TTTGAA	3																																																																					3
TTTGAC	1	1																																																																				2
TTTTAA	1																																																																					1
TTTTCA	1																																																																					1
TTTTGA	1																																																																					1
TTTTGT	1																																																																					1
TTTTTA	1																																																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	12	5	5	7	3	3	2	6	2	2	1	1	3	2	1		4		1		1					1				1				1																		1	65
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	10	6	6	5	3	5	2	6		3	4	2	4	2	1	1		3	1	3	1		1		1	1			1			1	1																				74
AC/GT	-	-	-	124	61	33	15	6	9	14	2	4	3	2			2	1		1	1	1	1	1											1	3																																		285
AG/CT	-	-	-	181	117	71	29	27	13	10	8	4	6	5	1		6			1		1				1	1	1				1																																						484
AT/AT	-	-	-	231	97	70	51	27	16	20	9	11	14	4	6	3	1	3		3	1		1																																															568
CG/CG	-	-	-	5																																																																		5
AAC/GTT	-	-	7	1	2																																																																	10
AAG/CTT	-	-	32	5	3	1																																																																41
AAT/ATT	-	-	91	18	9	5	1		1																																																													125
ACC/GGT	-	-	2	4																																																																		6
ACG/CGT	-	-	2																																																																			2
ACT/AGT	-	-	22	9	6	1	2																																																															40
AGC/CTG	-	-	8	3		2																																																																13
AGG/CCT	-	-	7	1		1																																																																9
ATC/ATG	-	-	40	15	4				1																																																													60
CCG/CGG	-	-	2		1			1																																																														4
AAAC/GTTT	-	50	3	1				1				1	1			1																																																						58
AAAG/CTTT	-	39	11	2		1																																																																53
AAAT/ATTT	-	116	24	5	2																																																																	147
AACG/CGTT	-	4		1																																																																		5
AACT/AGTT	-	4		1	1																																																																	6
AAGC/CTTG	-	3	1																																																																			4
AAGG/CCTT	-	3	2																																																																			5
AAGT/ACTT	-	8	2																																																																			10
AATC/ATTG	-	13	4	1			1																																																															19
AATG/ATTC	-	12	1		1																																																																	14
AATT/AATT	-	13																																																																				13
ACAG/CTGT	-	24	9	4	5		1																																																															43
ACAT/ATGT	-	29	15	2	4																																																																	50
ACCG/CGGT	-	4																																																																				4
ACCT/AGGT	-	4	1				1			2	1																																																											9
ACGC/CGTG	-	5	1	2	1	1																																																																10
ACGG/CCGT	-		2	1																																																																		3
ACGT/ACGT	-	3																																																																				3
ACTC/AGTG	-	2	1																																																																			3
ACTG/AGTC	-	9		4		1																																																																14
AGAT/ATCT	-	8	3	1		1																																																																13
AGCC/CTGG	-	1																																																																				1
AGCG/CGCT	-	1																																																																				1
AGGG/CCCT	-	1	1																																																																			2
ATCC/ATGG	-	12																																																																				12
ATCG/ATCG	-	2																																																																				2
CCCG/CGGG	-	1																																																																				1
AAAAC/GTTTT	23																																																																					23
AAAAG/CTTTT	34	3	2				1																																																															40
AAAAT/ATTTT	121	6																																																																				127
AAACC/GGTTT	6	1		1																																																																		8
AAACG/CGTTT	7	2																																																																				9
AAACT/AGTTT	6	2																																																																				8
AAAGC/CTTTG	4																																																																					4
AAAGG/CCTTT	6	1																																																																				7
AAAGT/ACTTT	11	1																																																																				12
AAATC/ATTTG	14	3																																																																				17
AAATG/ATTTC	19	1	1																																																																			21
AAATT/AATTT	77	3																																																																				80
AACAC/GTGTT	7																																																																					7
AACAG/CTGTT	18																																																																					18
AACAT/ATGTT	8																																																																					8
AACCC/GGGTT	2																																																																					2
AACCG/CGGTT	11	1	1																																																																			13
AACCT/AGGTT	75	35	14	8	12	14	11	8	7	8	5	6	2				1																																																					206
AACGC/CGTTG	1	1																																																																				2
AACGG/CCGTT	2																																																																					2
AACGT/ACGTT	7	2	1									1																																																										11
AACTC/AGTTG	3																																																																					3
AACTG/AGTTC	11	2																																																																				13
AACTT/AAGTT	7	1																																																																				8
AAGAC/CTTGT	6																																																																					6
AAGAG/CTCTT	9																																																																					9
AAGAT/ATCTT	7	1																																																																				8
AAGCC/CTTGG	1																																																																					1
AAGCG/CGCTT	3																																																																					3
AAGCT/AGCTT	5																																																																					5
AAGGG/CCCTT	2																																																																					2
AAGGT/ACCTT	3	1																																																																				4
AAGTC/ACTTG	5																																																																					5
AAGTG/ACTTC	6																																																																					6
AATAC/ATTGT	22	1	3																																																																			26
AATAG/ATTCT	13		2																																																																			15
AATAT/ATATT	41	1																																																																				42
AATCC/ATTGG	10																																																																					10
AATCG/ATTCG	7																																																																					7
AATCT/AGATT	12	1	1																																																																			14
AATGC/ATTGC	3																																																																					3
AATGG/ATTCC	8																																																																					8
AATGT/ACATT	12	1																																																																				13
AATTC/AATTG	17		1																																																																			18
ACACG/CGTGT	5		1																																																																			6
ACACT/AGTGT	4	1																																																																				5
ACAGC/CTGTG	1																																																																					1
ACAGG/CCTGT	4			1					1																																																													6
ACAGT/ACTGT	9	1	2																																																																			12
ACATC/ATGTG	5																																																																					5
ACATG/ATGTC	6																																																																					6
ACCAG/CTGGT	2																																																																					2
ACCAT/ATGGT	4	1																																																																				5
ACCCC/GGGGT	2																																																																					2
ACCCG/CGGGT	2		1																																																																			3
ACCCT/AGGGT	2																																																																					2
ACCGC/CGGTG	2																																																																					2
ACCGT/ACGGT	4																																																																					4
ACCTC/AGGTG	1																																																																					1
ACCTG/AGGTC	3																																																																					3
ACGAG/CGTCT	1																																																																					1
ACGAT/ATCGT	8																																																																					8
ACGCC/CGTGG	1																																																																					1
ACGCG/CGCGT	3	1																																																																				4
ACGGC/CCGTG	1		1	1																																																																		3
ACGGG/CCCGT	30	8		2	2	2																																																																44
ACGTC/ACGTG	8	1	2																																																																			11
ACTAG/AGTCT	6	1																																																																				7
ACTAT/AGTAT	7	1																																																																				8
ACTCC/AGTGG	2																																																																					2
ACTCT/AGAGT	3																																																																					3
ACTGC/AGTGC	2																																																																					2
AGAGC/CTCTG	2																																																																					2
AGAGG/CCTCT	1	1																																																																				2
AGATC/ATCTG	8	1																																																																				9
AGATG/ATCTC	5																																																																					5
AGCAT/ATGCT	1																																																																					1
AGCCG/CGGCT	1	1																																																																				2
AGCCT/AGGCT	2	1																																																																				3
AGCGC/CGCTG	2																																																																					2
AGCTC/AGCTG	3																																																																					3
AGGAT/ATCCT	7																																																																					7
AGGCC/CCTGG	1																																																																					1
AGGCG/CCTCG	1																																																																					1
AGGGG/CCCCT	1																																																																					1
ATATC/ATATG	4																																																																					4
ATCCC/ATGGG	3																																																																					3
ATCGC/ATGCG	7																																																																					7
ATGCC/ATGGC	1																																																																					1
CCCCG/CGGGG		1																																																																				1
CCGCG/CGCGG	4																																																																					4
AAAAAC/GTTTTT	3																																																																					3
AAAAAG/CTTTTT	3																																																																					3
AAAAAT/ATTTTT	4																																																																					4
AAAACT/AGTTTT	1																																																																					1
AAAAGG/CCTTTT									1	2																																																												3
AAAAGT/ACTTTT	3																																																																					3
AAAATC/ATTTTG	2																																																																					2
AAAATG/ATTTTC	3																																																																					3
AAAATT/AATTTT	5																																																																					5
AAACAT/ATGTTT		2																																																																				2
AAACCG/CGGTTT	2	1	1																																																																			4
AAACGT/ACGTTT	1																																																																					1
AAACTG/AGTTTC	1																																																																					1
AAAGCC/CTTTGG		1																																																																				1
AAAGCT/AGCTTT	1																																																																					1
AAAGGC/CCTTTG	1																																																																					1
AAAGGG/CCCTTT	3																																																																					3
AAAGTC/ACTTTG	3	1																																																																				4
AAATAC/ATTTGT	1	1																																																																				2
AAATAG/ATTTCT	1																																																																					1
AAATAT/ATATTT	2																																																																					2
AAATCC/ATTTGG	1																																																																					1
AAATCG/ATTTCG	1																																																																					1
AAATGC/ATTTGC	1																																																																					1
AAATGG/ATTTCC	1																																																																					1
AAATTC/AATTTG	10	2			1																																																																	13
AAATTG/AATTTC	1																																																																					1
AAATTT/AAATTT	2																																																																					2
AACAAT/ATTGTT	1																																																																					1
AACACC/GGTGTT	1		1																																																																			2
AACCTC/AGGTTG	2																																																																					2
AACGCC/CGTTGG			1																																																																			1
AACGGG/CCCGTT	1		2					1		1																																																												5
AACTAG/AGTTCT	2																																																																					2
AACTTG/AAGTTC	1																																																																					1
AAGACC/CTTGGT	1	2																																																																				3
AAGACT/AGTCTT	2																																																																					2
AAGAGG/CCTCTT	1																																																																					1
AAGAGT/ACTCTT	1																																																																					1
AAGATG/ATCTTC	1																																																																					1
AAGCAC/CTTGTG	1																																																																					1
AAGCAT/ATGCTT	1																																																																					1
AAGCGG/CCGCTT	1																																																																					1
AAGCTT/AAGCTT	1																																																																					1
AAGGAG/CCTTCT	1																																																																					1
AAGGCG/CCTTCG	1																																																																					1
AAGGCT/AGCCTT	1																																																																					1
AAGGGG/CCCCTT	1																																																																					1
AAGTAG/ACTTCT	1		1																																																																			2
AAGTCC/ACTTGG	1																																																																					1
AAGTCG/ACTTCG	1																																																																					1
AAGTCT/ACTTAG	1																																																																					1
AAGTGT/ACACTT	1																																																																					1
AATACG/ATTCGT	1																																																																					1
AATAGC/ATTGCT		1																																																																				1
AATAGG/ATTCCT	1																																																																					1
AATAGT/ACTATT	1																																																																					1
AATATG/ATATTC	1																																																																					1
AATATT/AATATT	1																																																																					1
AATCAG/ATTCTG	1																																																																					1
AATCAT/ATGATT	1																																																																					1
AATCCG/ATTCGG	1																																																																					1
AATCTG/AGATTC	1						1																																																															2
AATGAC/ATTGTC	1																																																																					1
AATGAG/ATTCTC	1																																																																					1
AATGCG/ATTCGC	1																																																																					1
AATGGG/ATTCCC	1																																																																					1
AATGGT/ACCATT	1																																																																					1
AATGTC/ACATTG	4																																																																					4
AATGTG/ACATTC	1																																																																					1
AATTAC/AATTGT	1																																																																					1
AATTAT/AATTAT	1																																																																					1
ACACAT/ATGTGT			1																																																																			1
ACACCC/GGGTGT	1																																																																					1
ACACCG/CGGTGT		1																																																																				1
ACACCT/AGGTGT	1																																																																					1
ACACGC/CGTGTG	1																																																																					1
ACACGT/ACGTGT								1																																																														1
ACACTC/AGTGTG	2																																																																					2
ACACTG/AGTGTC	1																																																																					1
ACAGAT/ATCTGT	1																																																																					1
ACAGGC/CCTGTG		1																																																																				1
ACAGGG/CCCTGT	2																																																																					2
ACAGTG/ACTGTC	6																																																																					6
ACATAT/ATATGT		2																																																																				2
ACATCC/ATGTGG			1																																																																			1
ACCACT/AGTGGT	1																																																																					1
ACCATC/ATGGTG	1																																																																					1
ACCCTC/AGGGTG		1		1																																																																		2
ACCGCC/CGGTGG	1	1																																																																				2
ACCGCT/AGCGGT	1																																																																					1
ACCGGG/CCCGGT	1	1																																																																				2
ACCGTC/ACGGTG	1																																																																					1
ACCTAT/AGGTAT	2																																																																					2
ACCTCC/AGGTGG						1																																																																1
ACCTGC/AGGTGC	1																																																																					1
ACCTGG/AGGTCC	1																																																																					1
ACGACT/AGTCGT	1																																																																					1
ACGATG/ATCGTC	1																																																																					1
ACGCAT/ATGCGT	1																																																																					1
ACGCCG/CGGCGT	1																																																																					1
ACGCGC/CGCGTG	3				1																																																																	4
ACGCTG/AGCGTC	1																																																																					1
ACGGCC/CCGTGG					1																																																																	1
ACGTAT/ACGTAT	1																																																																					1
ACTATG/AGTCAT	1																																																																					1
ACTCAT/AGTATG		1																																																																				1
ACTCCC/AGTGGG	1																																																																					1
ACTCTC/AGAGTG		1	1																																																																			2
ACTCTG/AGAGTC	1																																																																					1
ACTGAT/AGTATC	1																																																																					1
ACTGCG/AGTCGC		1																																																																				1
ACTGGC/AGTGCC	1																																																																					1
AGAGCC/CTCTGG	1																																																																					1
AGAGCG/CGCTCT	1	1		1																																																																		3
AGAGGC/CCTCTG								1																																																														1
AGAGGG/CCCTCT	7		2	1	1	1	2	1																																																														15
AGATCT/AGATCT	1																																																																					1
AGATGG/ATCTCC	1																																																																					1
AGCCCG/CGGGCT	1																																																																					1
AGCCGC/CGGCTG	2																																																																					2
AGCCGG/CCGGCT	1																																																																					1
AGCGAT/ATCGCT		1																																																																				1
AGCGCC/CGCTGG	4																																																																					4
AGCGGG/CCCGCT	2							1																																																														3
AGCTCC/AGCTGG	1																																																																					1
AGCTGC/AGCTGC	1																																																																					1
AGGCGC/CCTGCG	1																																																																					1
AGGGCG/CCCTCG	1																																																																					1
AGGGGG/CCCCCT		1																																																																				1
ATATCC/ATATGG	1																																																																					1
ATCGCC/ATGGCG	1																																																																					1
CCCCCG/CGGGGG	1																																																																					1
CCCCGG/CCGGGG	1																																																																					1
CCCGCG/CGCGGG			1																																																																			1
