Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018244975.1/fasta/hub_GCA_018244975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              94449
Total size of examined sequences (bp):           28668581
Total number of identified SSRs:                 3025
Number of SSR containing sequences:              2670
Number of sequences containing more than 1 SSR:  275
Number of SSRs present in compound formation:    249


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	180
2	932
3	268
4	423
5	1059
6	163

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11	7	3	5	4		2	3	2			1	3	2		1		1					1			1		1			1																					1																					50
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	3		2		1		4		1	2	3	1		1				1				2	1						1																																											25
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7		4	3	2	2		3	2	3	1		1	1			1	1	2			1				3		1																																													38
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	10	9	6	3	4	7	4	3	4	1	4			4				1				1	1						1													1															1		1													1	67
AC	-	-	-	34	21	8	5	4		1																																																																																73
AG	-	-	-	22	8	6	2	2	1																																																																																	41
AT	-	-	-	84	42	39	30	19	6	7	5	3	2	1		2			1	1																																																																						242
CA	-	-	-	10	8	1	1	1	2									1																																																																								24
CG	-	-	-	3	1																																																																																					4
CT	-	-	-	14	13	4	2	2	1		1	1	1	1																																																																												40
GA	-	-	-	23	7	4	1	3	2					1			1																																																																									42
GC	-	-	-	7	1																																																																																					8
GT	-	-	-	22	7	8	5	1	1	1			1	1																																																																												47
TA	-	-	-	99	50	27	30	13	16	10	5	8	4	3	1		1	1																																																																								268
TC	-	-	-	34	10	15	5	4	1	1		1	1																																																																													72
TG	-	-	-	39	5	7	6	2	3	5		2	1		1																																																																											71
AAC	-	-	2																																																																																							2
AAG	-	-	11																																																																																							11
AAT	-	-	16	8	2																																																																																					26
ACC	-	-	2																																																																																							2
ACT	-	-	4					1																																																																																		5
AGA	-	-	5		1																																																																																					6
AGT	-	-	4	1																																																																																						5
ATA	-	-	14	3	1		1																																																																																			19
ATC	-	-	2	1																																																																																						3
ATG	-	-	5	1																																																																																						6
ATT	-	-	15	5		1																																																																																				21
CAC	-	-	1	1																																																																																						2
CAG	-	-	4		1																																																																																					5
CAT	-	-	1																																																																																							1
CGA	-	-	1		1																																																																																					2
CGC	-	-	1	1																																																																																						2
CGG	-	-			1																																																																																					1
CTA	-	-	3	1	1																																																																																					5
CTC	-	-		1																																																																																						1
CTG	-	-			1																																																																																					1
CTT	-	-	5	2																																																																																						7
GAA	-	-	2	1																																																																																						3
GCC	-	-		1																																																																																						1
GCG	-	-	1	1																																																																																						2
GCT	-	-			1																																																																																					1
GGA	-	-	1																																																																																							1
GGC	-	-		1																																																																																						1
GGT	-	-	1	1																																																																																						2
GTA	-	-	3	1																																																																																						4
GTG	-	-	1	1																																																																																						2
TAA	-	-	16	1																																																																																						17
TAC	-	-	4	3																																																																																						7
TAG	-	-	9	1																																																																																						10
TAT	-	-	13	2		1																																																																																				16
TCA	-	-	6	1																																																																																						7
TCG	-	-	1																																																																																							1
TCT	-	-	5	3																																																																																						8
TGA	-	-	3			1																																																																																				4
TTA	-	-	23	10	1	2																																																																																				36
TTC	-	-	8	1																																																																																						9
TTG	-	-	2	1																																																																																						3
AAAC	-	5																																																																																								5
AAAG	-	3	1	1																																																																																						5
AAAT	-	12	4		2																																																																																					18
AACT	-	1						1																																																																																		2
AAGA	-	5		1																																																																																						6
AAGG	-	1																																																																																								1
AATA	-	16	4	3																																																																																						23
AATG	-	3																																																																																								3
ACAA	-	3																																																																																								3
ACAG	-	2													1																																																																											3
ACAT	-	6				1																																																																																				7
ACGA	-	2																																																																																								2
ACTA	-							1					1																																																																													2
ACTC	-	1																																																																																								1
ACTG	-	2																																																																																								2
ACTT	-	2																																																																																								2
AGAA	-	10	2																																																																																							12
AGAC	-	2																																																																																								2
AGAT	-	2																																																																																								2
AGGT	-	1																																																																																								1
AGTA	-	1																																																																																								1
AGTT	-										1																																																																															1
ATAA	-	6	1																																																																																							7
ATAC	-	4	1																																																																																							5
ATAG	-	3																																																																																								3
ATCA	-	3	1																																																																																							4
ATCC	-	3	1																																																																																							4
ATCT	-	1																																																																																								1
ATGA	-	2																																																																																								2
ATGG	-	1																																																																																								1
ATGT	-	2	1	1																																																																																						4
ATTA	-	4	1																																																																																							5
ATTC	-	4																																																																																								4
ATTG	-	1																																																																																								1
ATTT	-	7	1																																																																																							8
CAAA	-	6		1																																																																																						7
CAAT	-	1																																																																																								1
CATA	-	1	1																																																																																							2
CCGC	-	1																																																																																								1
CCGT	-	1																																																																																								1
CGAA	-	1																																																																																								1
CTAT	-	2																																																																																								2
CTCA	-	2																																																																																								2
CTGA	-	2																																																																																								2
CTTT	-	1		1																																																																																						2
GAAA	-	2	3	1																																																																																						6
GAAC	-	1																																																																																								1
GAAT	-		1																																																																																							1
GACA	-	4																																																																																								4
GATG	-	1																																																																																								1
GCGT	-	1																																																																																								1
GGAA	-	1																																																																																								1
GGTA	-	2																																																																																								2
GTAA	-			1																																																																																						1
GTAC	-	1																																																																																								1
GTAT	-	2		1																																																																																						3
GTCC	-	2																																																																																								2
GTCT	-	3							1																																																																																	4
GTGC	-			1																																																																																						1
GTTA	-		1																																																																																							1
GTTT	-	4																																																																																								4
TAAA	-	14	7	2																																																																																						23
TAAC	-	3																																																																																								3
TAAG	-	2																																																																																								2
TAAT	-	1																																																																																								1
TACA	-	5	2																																																																																							7
TACC	-	1																																																																																								1
TACG	-		1																																																																																							1
TACT	-	3																																																																																								3
TAGA	-	3	3	1																																																																																						7
TAGG	-	2																																																																																								2
TAGT	-		2						1																																																																																	3
TATC	-	8	1																																																																																							9
TATG	-	6	1																																																																																							7
TATT	-	4	3	1																																																																																						8
TCAA	-	1																																																																																								1
TCAG	-	2																																																																																								2
TCAT	-		1																																																																																							1
TCCA	-	1																																																																																								1
TCTA	-	2	2																																																																																							4
TCTG	-	3																																																																																								3
TCTT	-	2		1																																																																																						3
TGAA	-	2																																																																																								2
TGAC	-	1		1																																																																																						2
TGAT	-			1																																																																																						1
TGCA	-		1																																																																																							1
TGGA	-	3																																																																																								3
TGTA	-	7	4																																																																																							11
TGTC	-	3	1	2	1	1		1																																																																																		9
TGTT	-	2	1																																																																																							3
TTAA	-	3																																																																																								3
TTAC	-	2																																																																																								2
TTAG	-	1																																																																																								1
TTAT	-	11	2	1	1																																																																																					15
TTCA	-	3	1	1																																																																																						5
TTCT	-	2	1																																																																																							3
TTGA	-		1																																																																																							1
TTGT	-	1																																																																																								1
TTTA	-	22	5	2																																																																																						29
TTTC	-	14	9	1	1																																																																																					25
TTTG	-	6																																																																																								6
AAAAC	1																																																																																									1
AAAAG	4	1																																																																																								5
AAAAT	11																																																																																									11
AAACA	2																																																																																									2
AAACG	1																																																																																									1
AAACT	1																																																																																									1
AAAGA	4																																																																																									4
AAAGG	2																																																																																									2
AAAGT	4																																																																																									4
AAATA	10		1																																																																																							11
AAATC	2																																																																																									2
AAATG	5																																																																																									5
AAATT	13																																																																																									13
AACAA	1																																																																																									1
AACCC	1																																																																																									1
AACCT	12	2	4	1		1				1			1																																																																													22
AACGA	1																																																																																									1
AACGC	1																																																																																									1
AACGT	3																																																																																									3
AACTA	1																																																																																									1
AACTG	2																																																																																									2
AAGAA	1																																																																																									1
AAGGA	1																																																																																									1
AAGGT	1																																																																																									1
AAGTA	1																																																																																									1
AAGTG	1																																																																																									1
AAGTT	2																																																																																									2
AATAA	9																																																																																									9
AATAC	3	1																																																																																								4
AATAT	5																																																																																									5
AATCA	1																																																																																									1
AATCT	1	1																																																																																								2
AATGA	3					1																																																																																				4
AATGG	1																																																																																									1
AATGT	5																																																																																									5
AATTA	6																																																																																									6
AATTC	13	1																																																																																								14
AATTG	1																																																																																									1
AATTT	10	1																																																																																								11
ACAAA	2																																																																																									2
ACAAC	1																																																																																									1
ACAAT	1																																																																																									1
ACACA	2																																																																																									2
ACAGA		1																																																																																								1
ACAGT	1																																																																																									1
ACCTA	9	11	4	2	1	3	3		1		1		1																																																																													36
ACCTG	1																																																																																									1
ACCTT	1																																																																																									1
ACGAC	1																																																																																									1
ACGGA				1																																																																																						1
ACGGG	2																																																																																									2
ACGGT	1																																																																																									1
ACGTA	1																																																																																									1
ACGTC	1																																																																																									1
ACGTT	2																																																																																									2
ACTAG	2																																																																																									2
ACTAT	1																																																																																									1
ACTTC	1																																																																																									1
AGAAA	1																																																																																									1
AGAAT	3																																																																																									3
AGACT	2																																																																																									2
AGAGA	1																																																																																									1
AGATC	1																																																																																									1
AGCCA	1																																																																																									1
AGCTA	1																																																																																									1
AGCTT	1																																																																																									1
AGGTT	12	7	1	5	2					1																																																																																28
AGTAC	1	1																																																																																								2
AGTAT	1																																																																																									1
AGTCT		1																																																																																								1
AGTTC	2																																																																																									2
AGTTT	3																																																																																									3
ATAAA	10																																																																																									10
ATAAC	1																																																																																									1
ATAAG	2																																																																																									2
ATAAT	5	1																																																																																								6
ATACA	2																																																																																									2
ATACG	2																																																																																									2
ATACT	1																																																																																									1
ATAGG	1																																																																																									1
ATAGT	1																																																																																									1
ATATA	2																																																																																									2
ATATG	1																																																																																									1
ATATT	4																																																																																									4
ATCAA	1		1																																																																																							2
ATCCC	1																																																																																									1
ATCGA	1																																																																																									1
ATCGT	1																																																																																									1
ATCTT	1																																																																																									1
ATGAA	3		2																																																																																							5
ATGAT	1																																																																																									1
ATGCC	4																																																																																									4
ATGGC	3	2																																																																																								5
ATGGG	1																																																																																									1
ATGTT	1																																																																																									1
ATTAA	9																																																																																									9
ATTAC	2	1																																																																																								3
ATTAG	3																																																																																									3
ATTAT	4																																																																																									4
ATTCA	1																																																																																									1
ATTCG	2																																																																																									2
ATTCT	2																																																																																									2
ATTGA	1																																																																																									1
ATTGG	2																																																																																									2
ATTGT	2																																																																																									2
ATTTA	7																																																																																									7
ATTTC	5		2																																																																																							7
ATTTG	3		1																																																																																							4
ATTTT	10																																																																																									10
CAAAA	3																																																																																									3
CAAAC	2																																																																																									2
CAAAT	2																																																																																									2
CAATA	1																																																																																									1
CAATC	1																																																																																									1
CAATT	1																																																																																									1
CACAA	1																																																																																									1
CACGA		1																																																																																								1
CAGAA	2																																																																																									2
CAGAT	1																																																																																									1
CAGGT	1																																																																																									1
CATAA	1																																																																																									1
CATGC	1																																																																																									1
CATGG	1																																																																																									1
CATTA	1																																																																																									1
CATTC	1																																																																																									1
CCAGT	1																																																																																									1
CCATC	1																																																																																									1
CCATT	1																																																																																									1
CCCCT	1																																																																																									1
CCCGT	1																																																																																									1
CCGAG	1																																																																																									1
CCTAA	11	4		1	1	1				1			1																																																																													20
CCTAT	1																																																																																									1
CCTTT	1																																																																																									1
CGAAA	2																																																																																									2
CGAAT	1																																																																																									1
CGATT	1																																																																																									1
CGCGC	1																																																																																									1
CGCGG	1																																																																																									1
CGGGA	3																																																																																									3
CGGGT	1																																																																																									1
CGTAA	1																																																																																									1
CGTAT	1																																																																																									1
CGTCC	1	1																																																																																								2
CGTTA	3																																																																																									3
CGTTT	1																																																																																									1
CTAAA	1																																																																																									1
CTAAC	16	11	3	3	1		1						2																																																																													37
CTAAT	1																																																																																									1
CTACT													1																																																																													1
CTAGA	1																																																																																									1
CTAGG	1																																																																																									1
CTAGT	1																																																																																									1
CTATA	2																																																																																									2
CTATT	2																																																																																									2
CTCTA					1									1																																																																												2
CTTAC	2																																																																																									2
CTTAT			1																																																																																							1
CTTGA	1																																																																																									1
CTTGG	1																																																																																									1
CTTTC	1																																																																																									1
CTTTG	1																																																																																									1
CTTTT	1																																																																																									1
GAAAA	2																																																																																									2
GAAAT	2																																																																																									2
GAACT	1																																																																																									1
GAAGC	1																																																																																									1
GAAGG	1																																																																																									1
GAATC	1																																																																																									1
GAATT	2																																																																																									2
GACAC	1																																																																																									1
GACAG	1																																																																																									1
GACCA	1																																																																																									1
GACGG	2																																																																																									2
GACTT	1																																																																																									1
GAGAT	1																																																																																									1
GAGGG	1																																																																																									1
GAGTC	1																																																																																									1
GAGTG	1																																																																																									1
GATGA	1																																																																																									1
GATTA	1																																																																																									1
GATTC	1																																																																																									1
GCAAA	2																																																																																									2
GCCAA	2																																																																																									2
GCGCG	1																																																																																									1
GCGTC	1																																																																																									1
GCTTA	1																																																																																									1
GCTTG	1																																																																																									1
GGAAC	1																																																																																									1
GGACG		1		1																																																																																						2
GGACT	1																																																																																									1
GGAGG	1																																																																																									1
GGATG	1																																																																																									1
GGCGT	1																																																																																									1
GGGAC	4																																																																																									4
GGGAT	1																																																																																									1
GGGGT	1																																																																																									1
GGTTA	4	5	2	3	1		2	1	2		3	2																																																																														25
GGTTC	1																																																																																									1
GTAGT	1																																																																																									1
GTATA	2																																																																																									2
GTATT	1																																																																																									1
GTCCC	4																																																																																									4
GTCCT	1																																																																																									1
GTCGA	1																																																																																									1
GTGAA	1																																																																																									1
GTTAA	1																																																																																									1
GTTAG	6	5	1	2	2	2	1	2		1	1																																																																															23
GTTAT	1																																																																																									1
GTTCA	2																																																																																									2
GTTCG	1																																																																																									1
GTTTA	2																																																																																									2
GTTTT	1																																																																																									1
TAAAA	10																																																																																									10
TAAAC	1																																																																																									1
TAAAG	2																																																																																									2
TAAAT	6																																																																																									6
TAACA	1																																																																																									1
TAACC	13	8	12	4		1						2																																																																														40
TAACG	3																																																																																									3
TAACT	1																																																																																									1
TAAGA	2																																																																																									2
TAAGC	1																																																																																									1
TAATA	2																																																																																									2
TAATG	1																																																																																									1
TAATT	2	1																																																																																								3
TACAA	3	1	1																																																																																							5
TACAG	2																																																																																									2
TACAT	1																																																																																									1
TACCA	1																																																																																									1
TACCT	1																																																																																									1
TACGA	1																																																																																									1
TACGG	1																																																																																									1
TACTC	1																																																																																									1
TACTG	2																																																																																									2
TACTT	1																																																																																									1
TAGAA		1																																																																																								1
TAGAC	1	1																																																																																								2
TAGAG	1																																																																																									1
TAGAT	2																																																																																									2
TAGGC		1																																																																																								1
TAGGG	2																																																																																									2
TAGGT	16	14	7	6	1		1					3																																																																														48
TAGTA	2	1																																																																																								3
TATAA	6																																																																																									6
TATAC	2																																																																																									2
TATAG	2																																																																																									2
TATAT	3																																																																																									3
TATCG		1																																																																																								1
TATCT	1																																																																																									1
TATGA	1																																																																																									1
TATGC	1																																																																																									1
TATTA	7	1																																																																																								8
TATTC	5	1	1																																																																																							7
TATTG	1																																																																																									1
TATTT	4																																																																																									4
TCAAA	1		1																																																																																							2
TCAAG	1																																																																																									1
TCACT	1																																																																																									1
TCAGA		1																																																																																								1
TCATA	1																																																																																									1
TCATC	1																																																																																									1
TCATG	1																																																																																									1
TCATT	3																																																																																									3
TCCAT	2	1																																																																																								3
TCCCA	1																																																																																									1
TCCCT	1																																																																																									1
TCCGA	1																																																																																									1
TCGCA	2																																																																																									2
TCGGT	2																																																																																									2
TCGTG	1																																																																																									1
TCTAA	1																																																																																									1
TCTAG	1																																																																																									1
TCTAT	2																																																																																									2
TCTGA	1																																																																																									1
TCTGC	1																																																																																									1
TCTGT	1																																																																																									1
TCTTA	2																																																																																									2
TCTTC		1																																																																																								1
TCTTT	2																																																																																									2
TGAAA	4		1																																																																																							5
TGAAT	9																																																																																									9
TGACA	1																																																																																									1
TGATA	1																																																																																									1
TGATT	4			1																																																																																						5
TGCAA	1																																																																																									1
TGCCA	2																																																																																									2
TGCGA	1																																																																																									1
TGCTG	1																																																																																									1
TGGAA	1																																																																																									1
TGGAT	3																																																																																									3
TGGCA	1	1																																																																																								2
TGGCT	1																																																																																									1
TGGTC	2																																																																																									2
TGGTT	1																																																																																									1
TGTAA	1																																																																																									1
TGTAG	2																																																																																									2
TGTAT	2																																																																																									2
TGTGA	1																																																																																									1
TGTGG	1																																																																																									1
TGTTA	1																																																																																									1
TTAAA	3																																																																																									3
TTAAC	1																																																																																									1
TTAAT	9																																																																																									9
TTACG			1																																																																																							1
TTACT	2																																																																																									2
TTAGA	1																																																																																									1
TTAGG	11	8	1	2				1				1	1																																																																													25
TTAGT	1																																																																																									1
TTATA	2																																																																																									2
TTATG	2																																																																																									2
TTATT	10																																																																																									10
TTCAA	1	1																																																																																								2
TTCAG	1																																																																																									1
TTCAT	5	1																																																																																								6
TTCCA	1																																																																																									1
TTCCC	1																																																																																									1
TTCCT	3																																																																																									3
TTCTA	3	2																																																																																								5
TTCTG	2																																																																																									2
TTCTT	1																																																																																									1
TTGAA	4																																																																																									4
TTGAG		1																																																																																								1
TTGAT	1																																																																																									1
TTGCT	1																																																																																									1
TTGGA	1																																																																																									1
TTGGC	1																																																																																									1
TTGTA	4	2																																																																																								6
TTTAA	13																																																																																									13
TTTAC	1																																																																																									1
TTTAG	1	2																																																																																								3
TTTAT	9	1																																																																																								10
TTTCA	4	1																																																																																								5
TTTCG	1																																																																																									1
TTTCT	4		1																																																																																							5
TTTGA	3																																																																																									3
TTTGT	2																																																																																									2
TTTTA	21	1																																																																																								22
TTTTC	4		1	1																																																																																						6
TTTTG	10																																																																																									10
AAAACA	1																																																																																									1
AAACTC	2																																																																																									2
AAATAA	3																																																																																									3
AAATCA	1																																																																																									1
AAATCG	1																																																																																									1
AAATTG	1																																																																																									1
AAATTT	1																																																																																									1
AATAAA	2																																																																																									2
AATAGA	1			1																																																																																						2
AATAGG	1	1																																																																																								2
AATCGA		1																																																																																								1
AATTAC	1																																																																																									1
AATTTA	1																																																																																									1
AATTTG	1																																																																																									1
ACAATT	1																																																																																									1
ACACAG	1																																																																																									1
ACCGCA	1																																																																																									1
ACCTAA	1																																																																																									1
ACTCAA	1																																																																																									1
AGAAAT		1			1																																																																																					2
AGAATA	1																																																																																									1
AGCTGT	1																																																																																									1
AGGTCC	1			1																																																																																						2
ATAAAA	1																																																																																									1
ATAAAC	1																																																																																									1
ATAGTA	1																																																																																									1
ATATGA	1																																																																																									1
ATCTGG									1																																																																																	1
ATCTTT	1																																																																																									1
ATGATC	1																																																																																									1
ATGGGA	1																																																																																									1
ATGTAT	1																																																																																									1
ATGTTC	1																																																																																									1
ATTAAA	1																																																																																									1
ATTAGA		1																																																																																								1
ATTATA	1																																																																																									1
ATTCAA	2																																																																																									2
ATTCGC	1	1																																																																																								2
ATTGAC	1									2																																																																																3
ATTGGC	1																																																																																									1
ATTTCG				1	1				1																																																																																	3
ATTTTG	1																																																																																									1
ATTTTT	3																																																																																									3
CAATAG	1																																																																																									1
CACGTT	1																																																																																									1
CAGCCG					1																																																																																					1
CAGTCA	1																																																																																									1
CAGTGA			1																																																																																							1
CATACA	1																																																																																									1
CATTCG		1																																																																																								1
CCCGCG	1																																																																																									1
CCCGCT	1																																																																																									1
CCGATA		1			1																																																																																					2
CCGTCG			1																																																																																							1
CGATTT			1	1																																																																																						2
CGCTCT	1																																																																																									1
CGGCTA		1																																																																																								1
CGGGCT	1																																																																																									1
CTAGAC	1																																																																																									1
CTCAAA	1																																																																																									1
CTCTCC	1																																																																																									1
CTGAGG	1																																																																																									1
CTTGGC	1																																																																																									1
GAATAG										1																																																																																1
GAATTT	2																																																																																									2
GAGAGC	1																																																																																									1
GATGCT	1																																																																																									1
GATTTT	1																																																																																									1
GCGAAT	1																																																																																									1
GCGAGT	1																																																																																									1
GCGCAC	1																																																																																									1
GCGCTG	1																																																																																									1
GCGGAT	1																																																																																									1
GCTTGA			1																																																																																							1
GGCGCG	1																																																																																									1
GGCGTC	1		1																																																																																							2
GGCTGA	1																																																																																									1
GGGTGC	1																																																																																									1
GGTTTA	1																																																																																									1
GTAACT	1																																																																																									1
GTAGCT	1																																																																																									1
GTCCCA					1																																																																																					1
GTCCTA	1																																																																																									1
GTGAGG	1																																																																																									1
GTTCCA	1																																																																																									1
GTTGCA	1																																																																																									1
GTTGTA	1																																																																																									1
GTTTCA	1																																																																																									1
TAAACG	1																																																																																									1
TAACAC	1																																																																																									1
TAACTG	1																																																																																									1
TAAGCT	1																																																																																									1
TAAGTG	2																																																																																									2
TACTTT	1																																																																																									1
TAGCAG	1																																																																																									1
TATTTC			1																																																																																							1
TATTTT	1																																																																																									1
TCAAAC	1																																																																																									1
TCATAT	1																																																																																									1
TCCAGA	1	1			1																																																																																					3
TCCCGC	1																																																																																									1
TCGCTC	1																																																																																									1
TCGGCG		1																																																																																								1
TCTAAG	1																																																																																									1
TCTTTA	1																																																																																									1
TGACAC	2																																																																																									2
TGACAT										1																																																																																1
TGGAAC	1																																																																																									1
TGGATG	1																																																																																									1
TGGGAG	1																																																																																									1
TTAAAA	1																																																																																									1
TTAAAT	1																																																																																									1
TTACAG	1																																																																																									1
TTACTA	1																																																																																									1
TTATCA	1																																																																																									1
TTATTT	2																																																																																									2
TTCAAA	1																																																																																									1
TTCGAG	1																																																																																									1
TTCTAT	1																																																																																									1
TTCTTA	1																																																																																									1
TTTAAA	2																																																																																									2
TTTATT	2																																																																																									2
TTTCGA	1					1																																																																																				2
TTTCTA				1			1																																																																																			2
TTTCTC	1																																																																																									1
TTTCTT	1																																																																																									1
TTTGAC		1																																																																																								1
TTTGAG	2																																																																																									2
TTTTAA	2																																																																																									2
TTTTAT	1																																																																																									1
TTTTGA	1																																																																																									1
TTTTTA	1																																																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	21	16	9	8	8	7	6	6	6	1	4	1	3	6		1		2				1	2			1		1	1		1											1										1					1		1													1	117
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	3	4	5	2	3		7	2	4	3	3	2	1	1		1	1	3			1	2	1		3		1		1																																											63
AC/GT	-	-	-	105	41	24	17	8	6	7		2	2	1	1			1																																																																								215
AG/CT	-	-	-	93	38	29	10	11	5	1	1	2	2	2			1																																																																									195
AT/AT	-	-	-	183	92	66	60	32	22	17	10	11	6	4	1	2	1	1	1	1																																																																						510
CG/CG	-	-	-	10	2																																																																																					12
AAC/GTT	-	-	4	1																																																																																						5
AAG/CTT	-	-	36	7	1																																																																																					44
AAT/ATT	-	-	97	29	4	4	1																																																																																			135
ACC/GGT	-	-	5	3																																																																																						8
ACG/CGT	-	-	2		1																																																																																					3
ACT/AGT	-	-	27	7	1			1																																																																																		36
AGC/CTG	-	-	4		3																																																																																					7
AGG/CCT	-	-	1	1																																																																																						2
ATC/ATG	-	-	17	3		1																																																																																				21
CCG/CGG	-	-	2	4	1																																																																																					7
AAAC/GTTT	-	27	1	1																																																																																						29
AAAG/CTTT	-	39	16	6	1																																																																																					62
AAAT/ATTT	-	92	27	9	3																																																																																					131
AACG/CGTT	-	4																																																																																								4
AACT/AGTT	-	5	3					2	1		1		1																																																																													13
AAGG/CCTT	-	2																																																																																								2
AAGT/ACTT	-	10		1																																																																																						11
AATC/ATTG	-	6	2	1																																																																																						9
AATG/ATTC	-	14	3	1																																																																																						18
AATT/AATT	-	8	1																																																																																							9
ACAG/CTGT	-	17	1	2	1	1		1	1						1																																																																											25
ACAT/ATGT	-	33	10	2		1																																																																																				46
ACCT/AGGT	-	6																																																																																								6
ACGC/CGTG	-	1		1																																																																																						2
ACGG/CCGT	-	3																																																																																								3
ACGT/ACGT	-	1	1																																																																																							2
ACTC/AGTG	-	3																																																																																								3
ACTG/AGTC	-	7		1																																																																																						8
AGAT/ATCT	-	21	6	1																																																																																						28
ATCC/ATGG	-	9	1																																																																																							10
ATGC/ATGC	-		1																																																																																							1
CCCG/CGGG	-	1																																																																																								1
AAAAC/GTTTT	22																																																																																									22
AAAAG/CTTTT	24	1	2	1																																																																																						28
AAAAT/ATTTT	104	2	1																																																																																							107
AAACC/GGTTT	3																																																																																									3
AAACG/CGTTT	6																																																																																									6
AAACT/AGTTT	11	2																																																																																								13
AAAGC/CTTTG	4																																																																																									4
AAAGG/CCTTT	8																																																																																									8
AAAGT/ACTTT	11																																																																																									11
AAATC/ATTTG	18		3	1																																																																																						22
AAATG/ATTTC	34	2	5			1																																																																																				42
AAATT/AATTT	78	2																																																																																								80
AACAC/GTGTT	4																																																																																									4
AACAG/CTGTT	5	1																																																																																								6
AACAT/ATGTT	8																																																																																									8
AACCC/GGGTT	1																																																																																									1
AACCG/CGGTT	4																																																																																									4
AACCT/AGGTT	110	75	35	29	9	8	8	4	3	4	5	8	6																																																																													304
AACGC/CGTTG	1																																																																																									1
AACGG/CCGTT	1			1																																																																																						2
AACGT/ACGTT	13		1																																																																																							14
AACTC/AGTTG		1																																																																																								1
AACTG/AGTTC	8																																																																																									8
AACTT/AAGTT	5																																																																																									5
AAGAG/CTCTT	1	1																																																																																								2
AAGAT/ATCTT	8		1																																																																																							9
AAGCC/CTTGG	7																																																																																									7
AAGCG/CGCTT	1																																																																																									1
AAGCT/AGCTT	4																																																																																									4
AAGGG/CCCTT	3																																																																																									3
AAGGT/ACCTT	5																																																																																									5
AAGTC/ACTTG	3																																																																																									3
AAGTG/ACTTC	4																																																																																									4
AATAC/ATTGT	20	4	1																																																																																							25
AATAG/ATTCT	17	4	1																																																																																							22
AATAT/ATATT	40	2																																																																																								42
AATCC/ATTGG	7																																																																																									7
AATCG/ATTCG	7																																																																																									7
AATCT/AGATT	10	1																																																																																								11
AATGC/ATTGC	1																																																																																									1
AATGG/ATTCC	7	1																																																																																								8
AATGT/ACATT	11	1																																																																																								12
AATTC/AATTG	33	2																																																																																								35
ACACC/GGTGT	1																																																																																									1
ACACG/CGTGT	3	1																																																																																								4
ACACT/AGTGT	3																																																																																									3
ACAGC/CTGTG	1																																																																																									1
ACAGG/CCTGT	2																																																																																									2
ACAGT/ACTGT	6	1																																																																																								7
ACATC/ATGTG	1																																																																																									1
ACATG/ATGTC	2																																																																																									2
ACCAG/CTGGT	3																																																																																									3
ACCAT/ATGGT	1																																																																																									1
ACCCC/GGGGT	1																																																																																									1
ACCCG/CGGGT	1																																																																																									1
ACCCT/AGGGT	2																																																																																									2
ACCGT/ACGGT	2																																																																																									2
ACCTG/AGGTC	2																																																																																									2
ACGAT/ATCGT	5	1																																																																																								6
ACGCC/CGTGG	1																																																																																									1
ACGCG/CGCGT	1																																																																																									1
ACGGG/CCCGT	17	2		1																																																																																						20
ACGTC/ACGTG	1																																																																																									1
ACTAG/AGTCT	8	2																																																																																								10
ACTAT/AGTAT	14	1																																																																																								15
ACTCC/AGTGG	1																																																																																									1
ACTCG/AGTCG	2																																																																																									2
ACTCT/AGAGT	2				1								1	1																																																																												5
ACTGG/AGTCC	2																																																																																									2
AGAGC/CTCTG	1																																																																																									1
AGATC/ATCTG	3	1																																																																																								4
AGATG/ATCTC	3																																																																																									3
AGCAT/ATGCT	1																																																																																									1
AGCCG/CGGCT	1																																																																																									1
AGCCT/AGGCT	1	1																																																																																								2
AGGAT/ATCCT	2																																																																																									2
AGGGG/CCCCT	3																																																																																									3
ATATC/ATATG	5																																																																																									5
ATCCC/ATGGG	6																																																																																									6
ATCCG/ATCGG	1																																																																																									1
ATCGC/ATGCG	3																																																																																									3
ATGCC/ATGGC	12	3																																																																																								15
CCGCG/CGCGG	3																																																																																									3
AAAAAC/GTTTTT	1																																																																																									1
AAAAAG/CTTTTT	1																																																																																									1
AAAAAT/ATTTTT	16																																																																																									16
AAAAGT/ACTTTT	1																																																																																									1
AAAATC/ATTTTG	4																																																																																									4
AAAATT/AATTTT	4																																																																																									4
AAACAT/ATGTTT	1																																																																																									1
AAACCT/AGGTTT	2																																																																																									2
AAACGT/ACGTTT	1																																																																																									1
AAACTC/AGTTTG	7																																																																																									7
AAACTG/AGTTTC	1																																																																																									1
AAAGAG/CTCTTT	1																																																																																									1
AAAGAT/ATCTTT	2																																																																																									2
AAAGTC/ACTTTG		1																																																																																								1
AAATAG/ATTTCT	2	1	1	2	1		1																																																																																			8
AAATCG/ATTTCG	2	1	1	2	1	1			1																																																																																	9
AAATTC/AATTTG	6																																																																																									6
AAATTG/AATTTC	1																																																																																									1
AAATTT/AAATTT	5																																																																																									5
AACACT/AGTGTT	1																																																																																									1
AACATG/ATGTTC	1																																																																																									1
AACCGC/CGGTTG	1																																																																																									1
AACGTG/ACGTTC	1																																																																																									1
AACTAC/AGTTGT	1																																																																																									1
AACTCG/AGTTCG	1																																																																																									1
AACTGC/AGTTGC	1																																																																																									1
AACTGG/AGTTCC	2																																																																																									2
AACTGT/ACAGTT	3																																																																																									3
AAGAAT/ATTCTT	2																																																																																									2
AAGCTC/AGCTTG			1																																																																																							1
AAGCTT/AAGCTT	1																																																																																									1
AAGGCC/CCTTGG	1																																																																																									1
AAGTCT/ACTTAG	1																																																																																									1
AAGTGT/ACACTT	2																																																																																									2
AATAGC/ATTGCT	1																																																																																									1
AATAGG/ATTCCT	1	1								1																																																																																3
AATAGT/ACTATT	2																																																																																									2
AATATG/ATATTC	2																																																																																									2
AATGAT/ATCATT	1																																																																																									1
AATGCC/ATTGGC	1																																																																																									1
AATGCG/ATTCGC	2	2																																																																																								4
AATGGG/ATTCCC	1																																																																																									1
AATGTC/ACATTG	1									3																																																																																4
AATTAC/AATTGT	2																																																																																									2
AATTAG/AATTCT		1																																																																																								1
AATTAT/AATTAT	1																																																																																									1
ACACAG/CTGTGT	1																																																																																									1
ACACAT/ATGTGT	1																																																																																									1
ACACTG/AGTGTC	2																																																																																									2
ACAGCT/AGCTGT	2																																																																																									2
ACAGTC/ACTGTG	1																																																																																									1
ACAGTG/ACTGTC			1																																																																																							1
ACATAT/ATATGT	1																																																																																									1
ACATCC/ATGTGG	1																																																																																									1
ACCCGC/CGGGTG	1																																																																																									1
ACCCTC/AGGGTG	1																																																																																									1
ACCGAT/ATCGGT		1			1																																																																																					2
ACCTAG/AGGTCT	1																																																																																									1
ACCTGG/AGGTCC	1			1																																																																																						2
ACGCCG/CGGCGT	1	1	1																																																																																							3
ACGCGC/CGCGTG	1																																																																																									1
ACGGCG/CCGTCG			1																																																																																							1
ACGGCT/AGCCGT		1																																																																																								1
ACTAGG/AGTCCT	1																																																																																									1
ACTCCC/AGTGGG	1																																																																																									1
ACTCGC/AGTGCG	1																																																																																									1
ACTGCT/AGCAGT	1																																																																																									1
ACTGGG/AGTCCC					1																																																																																					1
AGAGCG/CGCTCT	3																																																																																									3
AGAGGG/CCCTCT	1																																																																																									1
AGATCC/ATCTGG	1	1			1				1																																																																																	4
AGCATC/ATGCTG	1																																																																																									1
AGCCCG/CGGGCT	1																																																																																									1
AGCCGC/CGGCTG					1																																																																																					1
AGCCTC/AGGCTG	2																																																																																									2
AGCGCC/CGCTGG	1																																																																																									1
AGCGGG/CCCGCT	2																																																																																									2
ATCATG/ATCATG	1																																																																																									1
ATCCGC/ATGCGG	1																																																																																									1
CCCGCG/CGCGGG	2																																																																																									2
