Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018231985.1/fasta/hub_GCA_018231985.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              75782
Total size of examined sequences (bp):           23291639
Total number of identified SSRs:                 2659
Number of SSR containing sequences:              2395
Number of sequences containing more than 1 SSR:  190
Number of SSRs present in compound formation:    196


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	198
2	400
3	244
4	550
5	1076
6	191

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	5	2	2	5	2	3	1	1								1					1	1						1							2				1		2				1							1					39
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	4	2	3	1		2	2	2		1	2	1	3	2	1	2	1		1	2	1	2	2	1		1		2																														42
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	7	4	3	4	3	1	1	1	2	6	2	2	4		1	2	1		2				3	1	1		1	1		1	1																										63
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	9	3	3	3	1		5	2	1	1	2	2	1		1			1			1													1			2					1												2	1	1	2	54
AC	-	-	-	11	9	5	3		2	2	4	1	1	2			1		1						1					1	1	1																																												46
AG	-	-	-	14	2	2	1	1		3			1		1																																																													25
AT	-	-	-	17	6	4	1			1						1																																																												30
CA	-	-	-	16	9	4	5	2		4	2	1	1		1		1		1																																																									47
CG	-	-	-	3																																																																								3
CT	-	-	-	20	5	3	2																																																																					30
GA	-	-	-	11	7	6		1	1											1																																																								27
GC	-	-	-	1																																																																								1
GT	-	-	-	15	7	5	3		1	2	1	1			1		1	2			1		1	1	1																																																			43
TA	-	-	-	22	5	4	1	1	1																																																																			34
TC	-	-	-	18	7	2	2	5	1	1				1																																																														37
TG	-	-	-	25	10	10	9	5	1	2	4	1	2	1		1		1		1	1	1	1													1																																								77
AAC	-	-	4																																																																									4
AAG	-	-	4	1																																																																								5
AAT	-	-	20	4				1																																																																				25
ACC	-	-				1																																																																						1
ACG	-	-	2																																																																									2
ACT	-	-	5																																																																									5
AGA	-	-	1																																																																									1
AGC	-	-	1																																																																									1
AGT	-	-	2	1	1																																																																							4
ATA	-	-	15	6		1			1																																																																			23
ATC	-	-	3																																																																									3
ATG	-	-	2		2																																																																							4
ATT	-	-	8	3	2																																																																							13
CAC	-	-	2																																																																									2
CAG	-	-	2																																																																									2
CAT	-	-	2					1																																																																				3
CCG	-	-	1	2																																																																								3
CCT	-	-			1																																																																							1
CGC	-	-	2	1																																																																								3
CGG	-	-	1																																																																									1
CTA	-	-	3	1																																																																								4
CTG	-	-		1				1																																																																				2
CTT	-	-	4	1																																																																								5
GAA	-	-		2																																																																								2
GAG	-	-				1																																																																						1
GAT	-	-	2	1																																																																								3
GCA	-	-	3			1																																																																						4
GCC	-	-	3																																																																									3
GCG	-	-	2	1	1																																																																							4
GCT	-	-	1																																																																									1
GGC	-	-	8																																																																									8
GTA	-	-		3																																																																								3
GTT	-	-	1																																																																									1
TAA	-	-	11	2	2	1																																																																						16
TAC	-	-	1		1																																																																							2
TAG	-	-	1																																																																									1
TAT	-	-	14	3		1																																																																						18
TCA	-	-	8	2	1	1																																																																						12
TCT	-	-	1	2																																																																								3
TGA	-	-	2	1																																																																								3
TGC	-	-	3	1	1	1																																																																						6
TGG	-	-	1																																																																									1
TGT	-	-	2	1		1																																																																						4
TTA	-	-	18	1	1		1			1																																																																		22
TTC	-	-	5	2																																																																								7
TTG	-	-	2																																																																									2
AAAC	-	2																																																																										2
AAAG	-	1	1				2																																																																					4
AAAT	-	12		3																																																																								15
AACA	-	4																																																																										4
AACT	-	1																																																																										1
AAGA	-	4																																																																										4
AAGC	-	1	1																																																																									2
AAGG	-	1	1																																																																									2
AAGT	-	2																																																																										2
AATA	-	11	3	3		1																																																																						18
AATG	-	1																																																																										1
AATT	-	1																																																																										1
ACAA	-	1																																																																										1
ACAG	-	11	4		1	2	3		1	1	1			1																																																														25
ACAT	-			1																																																																								1
ACCA	-					1							1																																																															2
ACCT	-	3																																																																										3
ACGG	-		1																																																																									1
ACTC	-	1																																																																										1
ACTG	-	2		1																																																																								3
ACTT	-	1																																																																										1
AGGA	-	1																																																																										1
AGGT	-	3																																																																										3
AGTA	-	2																																																																										2
ATAA	-	16	1																																																																									17
ATAC	-	4																																																																										4
ATAG	-	2									1		1																																																															4
ATCT	-		1																																																																									1
ATGA	-	3																																																																										3
ATGC	-	1																																																																										1
ATGT	-	4	1				1																																																																					6
ATTA	-	4																																																																										4
ATTC	-	2				1																																																																						3
ATTG	-	1	1																																																																									2
ATTT	-	13	7		2																																																																							22
CAAA	-	1	1																																																																									2
CAAC	-								1					1																																																														2
CAGA	-	4	1	1								1																																																																7
CAGT	-	1																																																																										1
CATA	-	4		1																																																																								5
CATT	-	1	1																																																																									2
CCAA	-											2																																																																2
CGCT	-	1																																																																										1
CGTC	-	1																																																																										1
CGTG	-	1																																																																										1
CTAA	-	1																																																																										1
CTAC	-	2	1																																																																									3
CTAG	-	1																																																																										1
CTAT	-	1																																																																										1
CTCA	-	4	1																																																																									5
CTGA	-	1																																																																										1
CTGT	-	2	1			1			1						1																																																													6
CTTC	-	2																																																																										2
CTTT	-	3																																																																										3
GAAA	-	2				1																																																																						3
GAAG	-	1																																																																										1
GACA	-	1		3						1	1	3																																																																9
GAGT	-		1																																																																									1
GATG	-	3																																																																										3
GCTG	-	1	1																																																																									2
GGAC	-		1																																																																									1
GGAT	-	1																																																																										1
GGTA	-	10																																																																										10
GGTT	-	1	1			1					1		1		1	2																																																												8
GTAC	-	1																																																																										1
GTAG	-	7																																																																										7
GTAT	-	1						1		1																																																																		3
GTCA	-	1																																																																										1
GTCG	-	1																																																																										1
GTCT	-	2			1		1																																																																					4
GTGA	-					1																																																																						1
GTTC	-	1																																																																										1
GTTG	-		2				2	2	2	1						1																																																												10
GTTT	-	2	1	1																																																																								4
TAAA	-	16	4		2	1																																																																						23
TAAT	-	1																																																																										1
TACA	-	4																																																																										4
TACC	-	22	1																																																																									23
TACT	-	2																																																																										2
TAGA	-	1																1																																																										2
TAGC	-	1																																																																										1
TAGG	-	8		1																																																																								9
TATC	-					1																																																																						1
TATG	-	1		1					1									1																																																										4
TATT	-	10	7	1		1																																																																						19
TCAA	-				1																																																																							1
TCAG	-	2																																																																										2
TCAT	-	2																																																																										2
TCCG	-	1																																																																										1
TCGT	-	1																																																																										1
TCTA	-	1	2																																																																									3
TCTG	-	4					2	2	1		2			1			1																																																											13
TGAA	-	4				1																																																																						5
TGAC	-	4																																																																										4
TGAG	-			1																																																																								1
TGGA	-		1																																																																									1
TGGC	-	1																																																																										1
TGGT	-	2											1		2																																																													5
TGTA	-	5	1	1																																																																								7
TGTC	-	7	2	4	3	1	1	1	1	2	2	2		2																																																														28
TGTT	-	5	2																																																																									7
TTAA	-	3	1																																																																									4
TTAC	-	3																																																																										3
TTAT	-	16	5			1																																																																						22
TTCA	-	6																																																																										6
TTCG	-	1																																																																										1
TTCT	-	2	1																																																																									3
TTGA	-	1																																																																										1
TTGG	-	1		2	1			1						1								1																																																						7
TTGT	-	2																																																																										2
TTTA	-	16	7					1																																																																				24
TTTC	-	12			4					1							1																																																											18
TTTG	-	2																																																																										2
AAAAC	3	1																																																																										4
AAAAG	4																																																																											4
AAAAT	11	1																																																																										12
AAACT	2																																																																											2
AAAGA	6																																																																											6
AAAGC	1																																																																											1
AAATA	15																																																																											15
AAATC	3																																																																											3
AAATG	2	1																																																																										3
AAATT	5	1																																																																										6
AACAA	3																																																																											3
AACAC	2																																																																											2
AACAG	1																																																																											1
AACAT	1	1																																																																										2
AACCT	2		1		1	2	2	1		1																																																																		10
AACGA	1																																																																											1
AACGT	2																																																																											2
AACTG	4																																																																											4
AAGAA	2																																																																											2
AAGCA	2																																																																											2
AAGCG	1																																																																											1
AAGCT	1																																																																											1
AAGGA		1																																																																										1
AAGTG	1																																																																											1
AAGTT	1																																																																											1
AATAA	14																																																																											14
AATAC	2																																																																											2
AATAG	3																																																																											3
AATAT	3																																																																											3
AATCA	3	1																																																																										4
AATCG	1																																																																											1
AATGA	5	2												1																																																														8
AATGG	3																																																																											3
AATGT	1																																																																											1
AATTA	4																																																																											4
AATTC	2																																																																											2
AATTG	1																																																																											1
AATTT	4																																																																											4
ACAAA	5																																																																											5
ACAAC	2																																																																											2
ACAAG	1																																																																											1
ACAAT	3																																																																											3
ACACA	3																																																																											3
ACAGA	1																																																																											1
ACATA	1																																																																											1
ACATC	1																																																																											1
ACATG	2																																																																											2
ACATT	2																																																																											2
ACCAA	1																																																																											1
ACCAT	1																																																																											1
ACCTA			1		1			1	2	2																																																																		7
ACGAC		1																																																																										1
ACGCG	1																																																																											1
ACGGA	1																																																																											1
ACGTA	1																																																																											1
ACGTG	1																																																																											1
ACGTT	1																																																																											1
ACTAC	1																																																																											1
ACTAG	2																																																																											2
ACTAT	3																																																																											3
ACTCA	2																																																																											2
ACTCT	1		1																																																																									2
ACTGA	2																																																																											2
ACTGT	1																																																																											1
ACTTG		1																																																																										1
ACTTT	2																																																																											2
AGAAT	4																																																																											4
AGAGG			1																																																																									1
AGAGT	1																																																																											1
AGCAA	1																																																																											1
AGCAC	1																																																																											1
AGCAT	1																																																																											1
AGCCA	1																																																																											1
AGCTA	1																																																																											1
AGCTG	1																																																																											1
AGGGT	1																																																																											1
AGGTT	4		1	1					1			1																																																																8
AGTAA	1																																																																											1
AGTCA	2																																																																											2
AGTGA	2																																																																											2
AGTGT	2																																																																											2
AGTTC	2																																																																											2
ATAAA	13																																																																											13
ATAAC		1																																																																										1
ATAAG	1																																																																											1
ATAAT	7																																																																											7
ATACA	1	1																																																																										2
ATAGG	1																																																																											1
ATATA	2																																																																											2
ATATG	2																																																																											2
ATATT	3																																																																											3
ATCAA	1																																																																											1
ATCAC	1																																																																											1
ATCCA	2																																																																											2
ATCCT	1																																																																											1
ATGAA	5	1																																																																										6
ATGAC	7																																																																											7
ATGAG	1																																																																											1
ATGCG	2																																																																											2
ATGGT	1																																																																											1
ATGTC	8																																																																											8
ATGTG	2																																																																											2
ATGTT	2																																																																											2
ATTAA	2																																																																											2
ATTAC	2																																																																											2
ATTAG	1																																																																											1
ATTAT	1																																																																											1
ATTCA	1																																																																											1
ATTCC	5	2																																																																										7
ATTGA	2																																																																											2
ATTGT	2																																																																											2
ATTTA	4																																																																											4
ATTTC	15	6	3										1																																																															25
ATTTG	1	1																																																																										2
ATTTT	14																																																																											14
CAAAA	3																																																																											3
CAAAG	1																																																																											1
CAAAT	1																																																																											1
CAACA	2																																																																											2
CAACG	1																																																																											1
CAATA	1																																																																											1
CAATG	1																																																																											1
CAATT	1																																																																											1
CACAA	1																																																																											1
CACAG	3	1																																																																										4
CACAT	2																																																																											2
CACCG	3																																																																											3
CACCT			1																																																																									1
CACGA	1																																																																											1
CACGT	1																																																																											1
CACTA	1																																																																											1
CACTT	2																																																																											2
CAGAC	1																																																																											1
CAGCA	1																																																																											1
CAGCT	1																																																																											1
CAGTA	2																																																																											2
CAGTC	1																																																																											1
CAGTT	2																																																																											2
CATAC	3																																																																											3
CATCA	1	1																																																																										2
CATGA	3																																																																											3
CATGG	2																																																																											2
CATTA	1																																																																											1
CATTC	1	2																																																																										3
CATTG	1																																																																											1
CATTT	2																																																																											2
CCAAA	1																																																																											1
CCACG	1																																																																											1
CCATA	1																																																																											1
CCCAG	1																																																																											1
CCCCT	1																																																																											1
CCCTT	1																																																																											1
CCGCA	1																																																																											1
CCGGC	1																																																																											1
CCTAA	1		1	2	1	1		3	2			1																																																																12
CCTAT	2																																																																											2
CCTCT				1																																																																								1
CCTTA	2																																																																											2
CCTTT	1																																																																											1
CGAAA		1																																																																										1
CGACA	1																																																																											1
CGACC	1																																																																											1
CGAGC	1																																																																											1
CGATA	2																																																																											2
CGATG	1																																																																											1
CGCCG	2																																																																											2
CGCCT	2																																																																											2
CGCGA	2																																																																											2
CGCGC		1																																																																										1
CGCGG	2																																																																											2
CGCGT	2																																																																											2
CGGCG	2																																																																											2
CGGTT	1																																																																											1
CGTAA	1																																																																											1
CGTAT	2																																																																											2
CGTCA	4																																																																											4
CGTGA	1																																																																											1
CGTTA	1																																																																											1
CGTTT	1																																																																											1
CTAAA	2																																																																											2
CTAAC	4		1			2																																																																						7
CTACA	3		1																																																																									4
CTAGA	2																																																																											2
CTATA	1																																																																											1
CTATC	2																																																																											2
CTCAA	3																																																																											3
CTCAG	1																																																																											1
CTCCT	1		1																																																																									2
CTCTA	1																																																																											1
CTCTT	1																																																																											1
CTGAC	2																																																																											2
CTGAG	1																																																																											1
CTGCA	2																																																																											2
CTGCG	1																																																																											1
CTGGA	1																																																																											1
CTGGC	1																																																																											1
CTGTG	2																																																																											2
CTGTT	1																																																																											1
CTTAG	1																																																																											1
CTTCA	1																																																																											1
CTTTA	1																																																																											1
CTTTG	1																																																																											1
CTTTT	3																																																																											3
GAAAA	4																																																																											4
GAAAC	2																																																																											2
GAAAT	3	1																																																																										4
GAACC	1																																																																											1
GAACG	1																																																																											1
GAACT	1																																																																											1
GAAGT	1	1																																																																										2
GAATG	1	1																																																																										2
GAATT	1																																																																											1
GACAG	1																																																																											1
GACAT	4																																																																											4
GACTG	1																																																																											1
GAGAT	1																																																																											1
GAGTA	1																																																																											1
GAGTC	1																																																																											1
GAGTG	1																																																																											1
GATTT	1																																																																											1
GCACA	3																																																																											3
GCCGC	1																																																																											1
GCCTT	1																																																																											1
GCGAA	1																																																																											1
GCGAC	1																																																																											1
GCGCA	1																																																																											1
GCGCG	1																																																																											1
GCGGC	3																																																																											3
GCGGG	2																																																																											2
GCGTA	1																																																																											1
GCGTC	2																																																																											2
GCTAC	2																																																																											2
GCTAG	2																																																																											2
GCTAT	1																																																																											1
GCTGC	1																																																																											1
GCTGT	3																																																																											3
GCTTC	1																																																																											1
GGAAT	1	1																																																																										2
GGAGA	1																																																																											1
GGAGT	1																																																																											1
GGATG	1																																																																											1
GGCTA	1																																																																											1
GGCTT	1																																																																											1
GGGGA	1																																																																											1
GGTAA	2																																																																											2
GGTGA	1																																																																											1
GGTGT		1																																																																										1
GGTTA	2		1	3		5		2	1			1	1																																																															16
GTAAC	1																																																																											1
GTAAT	1																																																																											1
GTACA	1																																																																											1
GTAGG	1																																																																											1
GTAGT	3																																																																											3
GTATA	1																																																																											1
GTATT	3																																																																											3
GTCAA	6																																																																											6
GTCAC	2																																																																											2
GTCAT	1																																																																											1
GTCCG	1																																																																											1
GTCCT	1																																																																											1
GTCGT	2																																																																											2
GTCTC	1																																																																											1
GTGAC	1	1																																																																										2
GTGAT	2																																																																											2
GTGCG	1	1																																																																										2
GTGGT	2			1		1																																																																						4
GTGTA		1																																																																										1
GTGTC	1																																																																											1
GTGTG	3																																																																											3
GTGTT	1																																																																											1
GTTAG	2		1	2	1	1	4	1		1	1																																																																	14
GTTAT	1																																																																											1
GTTCC	1																																																																											1
GTTCG	1																																																																											1
GTTGT	2																																																																											2
GTTTA	1																																																																											1
GTTTC	2																																																																											2
GTTTT	4																																																																											4
TAAAA	21																																																																											21
TAAAT	1																																																																											1
TAACC	3	1	1	1		2																																																																						8
TAACG	2																																																																											2
TAAGG	1																																																																											1
TAATA	1																																																																											1
TAATG	1																																																																											1
TAATT	5																																																																											5
TACAA	3																																																																											3
TACAC	2																																																																											2
TACCC	1																																																																											1
TACGA	1																																																																											1
TACGC		1																																																																										1
TACGG	2																																																																											2
TACGT	2																																																																											2
TACTA	1																																																																											1
TACTG	1																																																																											1
TAGAA	1																																																																											1
TAGAC	1																																																																											1
TAGCC	1																																																																											1
TAGCT	1																																																																											1
TAGGT	2	2	3	1	1		2			1				1																																																														13
TAGTA	2																																																																											2
TAGTC	1																																																																											1
TAGTG	1																																																																											1
TATAA	2																																																																											2
TATAT	2																																																																											2
TATCA	1																																																																											1
TATCG	3																																																																											3
TATGG	1																																																																											1
TATGT	2																																																																											2
TATTA		1																																																																										1
TATTG	2																																																																											2
TATTT	6									1																																																																		7
TCAAA	3																																																																											3
TCAAT	1																																																																											1
TCACA	2																																																																											2
TCACC	1																																																																											1
TCACT	2																																																																											2
TCAGA	2																																																																											2
TCAGT	1																																																																											1
TCATC	1																																																																											1
TCATG	3																																																																											3
TCATT	3																																																																											3
TCCAA	1																																																																											1
TCCAT	3					1																																																																						4
TCCCA	1																																																																											1
TCCCC	1																																																																											1
TCCGA	1																																																																											1
TCCGT	1																																																																											1
TCGAT	1																																																																											1
TCGCA	1																																																																											1
TCGTC	3																																																																											3
TCGTT	1																																																																											1
TCTAA	1																																																																											1
TCTAC		1																																																																										1
TCTAT	1																																																																											1
TCTCA	1																																																																											1
TCTCC	2																																																																											2
TCTCT	2																																																																											2
TCTTC	1																																																																											1
TCTTT	3																																																																											3
TGAAA	3	4		1																																																																								8
TGAAC	1																																																																											1
TGAAT	2																																																																											2
TGACA	7																																																																											7
TGACG	3																																																																											3
TGACT	1																																																																											1
TGAGT	1																																																																											1
TGATG	2																																																																											2
TGATT	3	1																																																																										4
TGCTA	1																																																																											1
TGCTG	1	1																																																																										2
TGCTT	1																																																																											1
TGGAA	1		1																																																																									2
TGGAC	1																																																																											1
TGGAG	1																																																																											1
TGGCA	1																																																																											1
TGGCT	2																																																																											2
TGGGT	2																																																																											2
TGGTC	1																																																																											1
TGGTT	1																																																																											1
TGTAA	2																																																																											2
TGTAC	2					1																																																																						3
TGTAG	3																																																																											3
TGTAT	2																																																																											2
TGTCA	10																																																																											10
TGTCC	1																																																																											1
TGTCG	1																																																																											1
TGTCT	1																																																																											1
TGTGA	3																																																																											3
TGTGG	2																																																																											2
TGTGT	2																																																																											2
TGTTC	1																																																																											1
TGTTT	2																																																																											2
TTAAA	5																																																																											5
TTAAG	1																																																																											1
TTAAT	2																																																																											2
TTACA	2																																																																											2
TTACG	2																																																																											2
TTAGA	3																																																																											3
TTAGG	1			2	1	1	1	1	3		1		1																																																															12
TTAGT	1																																																																											1
TTATA	1																																																																											1
TTATC	3																																																																											3
TTATG	3																																																																											3
TTATT	12	1																																																																										13
TTCAA	2	1	1																																																																									4
TTCAC	1	2																																																																										3
TTCAG	1																																																																											1
TTCAT	8	1																																																																										9
TTCCA	5	1																																																																										6
TTCCC	2																																																																											2
TTCCT	2																																																																											2
TTCGA	1																																																																											1
TTCGT	2																																																																											2
TTCTA	1																																																																											1
TTCTC	1																																																																											1
TTCTG	2																																																																											2
TTCTT	4																																																																											4
TTGAA	3																																																																											3
TTGAC	3																																																																											3
TTGAT	1																																																																											1
TTGCG	1																																																																											1
TTGCT	1																																																																											1
TTGGA	2																																																																											2
TTGTA	3																																																																											3
TTGTC	1																																																																											1
TTGTG	1																																																																											1
TTGTT	10																																																																											10
TTTAA	3																																																																											3
TTTAC	1																																																																											1
TTTAG	3																																																																											3
TTTAT	15	2																																																																										17
TTTCA	13	1																																																																										14
TTTCC	1																																																																											1
TTTCG	2																																																																											2
TTTCT	6	1																																																																										7
TTTGA	5		1																																																																									6
TTTGG	2																																																																											2
TTTGT	6																																																																											6
TTTTA	20	1																																																																										21
TTTTC	4																																																																											4
TTTTG	3																																																																											3
AAAACA	1																																																																											1
AAAATA	1																																																																											1
AAAATT	1																																																																											1
AAAGAA	1																																																																											1
AAATTC	1																																																																											1
AACACC				1																																																																								1
AACGTT	1																																																																											1
AAGGTA	1																																																																											1
AAGTGC	1																																																																											1
AATAAA	1	1																																																																										2
AATATG	1																																																																											1
AATCTC		1																																																																										1
AATTAA	1																																																																											1
AATTCA		1																																																																										1
AATTTG	1	1																																																																										2
AATTTT	2																																																																											2
ACAATA	1																																																																											1
ACACAT	1																																																																											1
ACAGCC	1																																																																											1
ACATAA	1																																																																											1
ACCGAA	1																																																																											1
ACCGGG	1																																																																											1
ACCTAC	1																																																																											1
ACTGAC	1																																																																											1
ACTGTC		1																																																																										1
AGCGGA	1																																																																											1
AGCTAG	1																																																																											1
AGCTTC	1																																																																											1
AGGATT	1																																																																											1
AGGTAA	1																																																																											1
AGTAGC		1																																																																										1
AGTCAA	1																																																																											1
ATAAAA	1																																																																											1
ATAGCA	1																																																																											1
ATCATT	1																																																																											1
ATCCAG	1																																																																											1
ATCCGT	2																																																																											2
ATCCTG	1																																																																											1
ATCGTC	1																																																																											1
ATCTCA	1																																																																											1
ATGTCT	1																																																																											1
ATTAAG	1																																																																											1
ATTACT	1																																																																											1
ATTCAA	1																																																																											1
ATTTGA	1																																																																											1
ATTTTA	1																																																																											1
ATTTTC	1																																																																											1
ATTTTT	2																																																																											2
CAAATT	1																																																																											1
CAACAC	1																																																																											1
CAAGAC	1	2																																																																										3
CAATCT	1																																																																											1
CAATGG	1																																																																											1
CACGCG	1																																																																											1
CACTTG	1																																																																											1
CAGATA	1																																																																											1
CAGGAT	1																																																																											1
CATCAA	1																																																																											1
CATCTA	1																																																																											1
CATTCC	1																																																																											1
CCAAAT		1																																																																										1
CCAGGA	1																																																																											1
CCCTCT	1																																																																											1
CCGAAA	2																																																																											2
CCGACA	1																																																																											1
CGGACG	1																																																																											1
CGGATA	3																																																																											3
CGGGGG	1																																																																											1
CGGTCA	1																																																																											1
CGTTTG	1																																																																											1
CTCTCC		1																																																																										1
CTGCAC	1																																																																											1
CTGGTC	1																																																																											1
GAAAAT		1																																																																										1
GAACAA	1																																																																											1
GACAAG	1																																																																											1
GACCAG	1																																																																											1
GAGAGG	1																																																																											1
GAGCAT	1																																																																											1
GAGGGG	1																																																																											1
GATATG	1																																																																											1
GATGCG	1																																																																											1
GCAAAA	1																																																																											1
GCCCAG	1																																																																											1
GCCGGT	1																																																																											1
GCGACA	1																																																																											1
GCGCAG	2																																																																											2
GCGGCA	2																																																																											2
GCGGGC	2																																																																											2
GCTGCG		1																																																																										1
GCTTGA	1																																																																											1
GGGGGA	1																																																																											1
GGTGCA	1																																																																											1
GGTTCT	1																																																																											1
GTAATG	1																																																																											1
GTATGT	1																																																																											1
GTCTTG	1																																																																											1
GTGACA	1																																																																											1
GTGTCA	1																																																																											1
GTTGAC	1																																																																											1
GTTTGA	1																																																																											1
TAAAAA	2																																																																											2
TAAACC	1																																																																											1
TAAATT	1																																																																											1
TAACAT	1																																																																											1
TAATAT	1																																																																											1
TACGGT	1																																																																											1
TAGAAA	1																																																																											1
TAGACA	1																																																																											1
TAGCTC	1																																																																											1
TAGGTT	1																																																																											1
TATAAA	1																																																																											1
TATAAG	1																																																																											1
TATACC	1																																																																											1
TATAGC	1																																																																											1
TATCCG	3	2																																																																										5
TATCTA	1																																																																											1
TATTCA	1																																																																											1
TATTTT	2																																																																											2
TCAACA	1																																																																											1
TCACAC	1																																																																											1
TCAGAA		1																																																																										1
TCATAA	1																																																																											1
TCATTC	1																																																																											1
TCATTT	1																																																																											1
TCCCCT	1																																																																											1
TCCCGC	1																																																																											1
TCCTGA	1																																																																											1
TCGGTT	1																																																																											1
TCGTGC	1																																																																											1
TCTCTT	1																																																																											1
TGAAAA	1																																																																											1
TGACAA	1																																																																											1
TGACAC				1																																																																								1
TGACAG	1																																																																											1
TGATTA	1																																																																											1
TGCGGC	1																																																																											1
TGCTTC	1																																																																											1
TGGCAA	1																																																																											1
TGGTAC	1																																																																											1
TGTATC	1																																																																											1
TGTCAA	4																																																																											4
TTAAAA	1																																																																											1
TTAAAT	1																																																																											1
TTAACG	1																																																																											1
TTAAGG	1																																																																											1
TTAATG		2																																																																										2
TTCAAA	1																																																																											1
TTCCGA	1																																																																											1
TTCTCC	1																																																																											1
TTCTTA	1																																																																											1
TTGAAA		1																																																																										1
TTGAAT	2																																																																											2
TTGGAT	1																																																																											1
TTGTCA	1																																																																											1
TTGTTA	1																																																																											1
TTTATC	2																																																																											2
TTTCGG	2																																																																											2
TTTTAA	1																																																																											1
TTTTAG	1																																																																											1
TTTTAT	1																																																																											1
TTTTCA	2																																																																											2
TTTTTA	2																																																																											2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	11	13	8	5	5	6	2	8	3	2	1	2	2	1		1		1	1			1	1	1						1					1		2	2			1		3				1							1	2	1	1	2	93
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	8	9	7	4	4	5	3	3	1	3	8	3	5	6	1	3	3	1	1	4	1	2	2	4	1	2		3	1		1	1																										105
AC/GT	-	-	-	67	35	24	20	7	4	10	11	4	4	3	2	1	3	3	2	1	2	1	2	1	2					1	1	1				1																																								213
AG/CT	-	-	-	63	21	13	5	7	2	4			1	1	1					1																																																								119
AT/AT	-	-	-	39	11	8	2	1	1	1						1																																																												64
CG/CG	-	-	-	4																																																																								4
AAC/GTT	-	-	9	1		1																																																																						11
AAG/CTT	-	-	15	8																																																																								23
AAT/ATT	-	-	86	19	5	3	1	1	1	1																																																																		117
ACC/GGT	-	-	3			1																																																																						4
ACG/CGT	-	-	2																																																																									2
ACT/AGT	-	-	12	5	2																																																																							19
AGC/CTG	-	-	10	2	1	2		1																																																																				16
AGG/CCT	-	-			1	1																																																																						2
ATC/ATG	-	-	19	4	3	1		1																																																																				28
CCG/CGG	-	-	17	4	1																																																																							22
AAAC/GTTT	-	19	4	1																																																																								24
AAAG/CTTT	-	24	2		4	1	2			1							1																																																											35
AAAT/ATTT	-	110	34	7	4	4		1																																																																				160
AACC/GGTT	-	4	3	2	1	2	2	3	3	1	1	2	3	2	3	3						1																																																						36
AACG/CGTT	-	3																																																																										3
AACT/AGTT	-	2																																																																										2
AAGC/CTTG	-	1	1																																																																									2
AAGG/CCTT	-	5	1																																																																									6
AAGT/ACTT	-	10																																																																										10
AATC/ATTG	-	2	1		1																																																																							4
AATG/ATTC	-	19	1			2																																																																						22
AATT/AATT	-	9	1																																																																									10
ACAG/CTGT	-	31	8	8	5	4	7	3	4	4	6	6		4	1		1																																																											92
ACAT/ATGT	-	23	2	4			1	1	1	1								1																																																										34
ACCG/CGGT	-	1																																																																										1
ACCT/AGGT	-	55	2	1																																																																								58
ACGC/CGTG	-	1																																																																										1
ACGG/CCGT	-	2	2																																																																									4
ACGT/ACGT	-	1																																																																										1
ACTC/AGTG	-	5	2	1		1																																																																						9
ACTG/AGTC	-	11		1																																																																								12
AGAT/ATCT	-	5	3			1					1		1					1																																																										12
AGCC/CTGG	-	2	1																																																																									3
AGCG/CGCT	-	1																																																																										1
AGCT/AGCT	-	2																																																																										2
ATCC/ATGG	-	4	1																																																																									5
ATGC/ATGC	-	1																																																																										1
AAAAC/GTTTT	39	1																																																																										40
AAAAG/CTTTT	36	1																																																																										37
AAAAT/ATTTT	141	5								1																																																																		147
AAACC/GGTTT	5																																																																											5
AAACG/CGTTT	11	1																																																																										12
AAACT/AGTTT	9																																																																											9
AAAGC/CTTTG	8																																																																											8
AAAGG/CCTTT	4	1																																																																										5
AAAGT/ACTTT	5																																																																											5
AAATC/ATTTG	22	3	1																																																																									26
AAATG/ATTTC	59	17	3	1									1	1																																																														82
AAATT/AATTT	35	1																																																																										36
AACAC/GTGTT	16																																																																											16
AACAG/CTGTT	6																																																																											6
AACAT/ATGTT	10	2																																																																										12
AACCC/GGGTT	2																																																																											2
AACCG/CGGTT	3																																																																											3
AACCT/AGGTT	21	3	11	12	6	14	9	9	9	5	2	3	2	1																																																														107
AACGC/CGTTG	2																																																																											2
AACGG/CCGTT	4																																																																											4
AACGT/ACGTT	13																																																																											13
AACTC/AGTTG	6																																																																											6
AACTG/AGTTC	14																																																																											14
AACTT/AAGTT	2																																																																											2
AAGAC/CTTGT	3																																																																											3
AAGAG/CTCTT	5																																																																											5
AAGAT/ATCTT	4																																																																											4
AAGCC/CTTGG	4																																																																											4
AAGCG/CGCTT	3																																																																											3
AAGCT/AGCTT	4																																																																											4
AAGGC/CCTTG	1																																																																											1
AAGGG/CCCTT	3																																																																											3
AAGGT/ACCTT	5																																																																											5
AAGTC/ACTTG	12	1																																																																										13
AAGTG/ACTTC	10	3																																																																										13
AATAC/ATTGT	22	1																																																																										23
AATAG/ATTCT	10																																																																											10
AATAT/ATATT	22	1																																																																										23
AATCC/ATTGG	5																																																																											5
AATCG/ATTCG	3																																																																											3
AATCT/AGATT	5																																																																											5
AATGC/ATTGC	2																																																																											2
AATGG/ATTCC	20	7	1			1																																																																						29
AATGT/ACATT	12																																																																											12
AATTC/AATTG	16	1	1																																																																									18
ACACC/GGTGT	7	1		1		1																																																																						10
ACACG/CGTGT	6	1																																																																										7
ACACT/AGTGT	16	1	1																																																																									18
ACAGC/CTGTG	14	2																																																																										16
ACAGG/CCTGT	3																																																																											3
ACAGT/ACTGT	7					1																																																																						8
ACATC/ATGTG	16	1																																																																										17
ACATG/ATGTC	45																																																																											45
ACCAG/CTGGT	2																																																																											2
ACCAT/ATGGT	7																																																																											7
ACCCG/CGGGT	1																																																																											1
ACCCT/AGGGT	3																																																																											3
ACCGC/CGGTG	5	1																																																																										6
ACCGG/CCGGT	1																																																																											1
ACCGT/ACGGT	2																																																																											2
ACCTC/AGGTG	2		1																																																																									3
ACCTG/AGGTC	2																																																																											2
ACGAG/CGTCT	4																																																																											4
ACGAT/ATCGT	8																																																																											8
ACGCC/CGTGG	1																																																																											1
ACGCG/CGCGT	8																																																																											8
ACGCT/AGCGT	3	1																																																																										4
ACGTC/ACGTG	13	1																																																																										14
ACTAG/AGTCT	6																																																																											6
ACTAT/AGTAT	8																																																																											8
ACTCC/AGTGG	3																																																																											3
ACTCG/AGTCG	1																																																																											1
ACTCT/AGAGT	4	1	1																																																																									6
ACTGC/AGTGC	2																																																																											2
ACTGG/AGTCC	4																																																																											4
AGAGG/CCTCT	4		2	1																																																																								7
AGATC/ATCTG	2																																																																											2
AGATG/ATCTC	4																																																																											4
AGCAT/ATGCT	3																																																																											3
AGCCC/CTGGG	1																																																																											1
AGCCG/CGGCT	1																																																																											1
AGCCT/AGGCT	4																																																																											4
AGCGC/CGCTG	3																																																																											3
AGCTC/AGCTG	4																																																																											4
AGGAT/ATCCT	6																																																																											6
AGGCC/CCTGG	1																																																																											1
AGGCG/CCTCG	2																																																																											2
AGGGG/CCCCT	3																																																																											3
ATATC/ATATG	3																																																																											3
ATCCC/ATGGG	2																																																																											2
ATCCG/ATCGG	1																																																																											1
ATCGC/ATGCG	4																																																																											4
ATGCC/ATGGC	3																																																																											3
CCCCG/CGGGG	2																																																																											2
CCCGG/CCGGG	1																																																																											1
CCGCG/CGCGG	11	1																																																																										12
AAAAAC/GTTTTT	1																																																																											1
AAAAAG/CTTTTT	1																																																																											1
AAAAAT/ATTTTT	12	1																																																																										13
AAAACT/AGTTTT	1																																																																											1
AAAAGC/CTTTTG	1																																																																											1
AAAATG/ATTTTC	5	1																																																																										6
AAAATT/AATTTT	7																																																																											7
AAACAT/ATGTTT	1																																																																											1
AAACCG/CGGTTT	6																																																																											6
AAACCT/AGGTTT	2																																																																											2
AAACGC/CGTTTG	1																																																																											1
AAACTC/AGTTTG	1																																																																											1
AAAGAG/CTCTTT	1																																																																											1
AAAGAT/ATCTTT	2																																																																											2
AAAGGT/ACCTTT	2																																																																											2
AAAGTC/ACTTTG	1																																																																											1
AAATAG/ATTTCT	1																																																																											1
AAATAT/ATATTT	1																																																																											1
AAATCC/ATTTGG	1	1																																																																										2
AAATTC/AATTTG	8	2																																																																										10
AAATTG/AATTTC		1																																																																										1
AAATTT/AAATTT	2																																																																											2
AACAAG/CTTGTT	1																																																																											1
AACAAT/ATTGTT	2																																																																											2
AACACC/GGTGTT	1			1																																																																								2
AACATC/ATGTTG	2																																																																											2
AACATT/AATGTT	1	2																																																																										3
AACCAG/CTGGTT	1																																																																											1
AACCGT/ACGGTT	1																																																																											1
AACCTT/AAGGTT	1																																																																											1
AACGTC/ACGTTG	1																																																																											1
AACGTT/AACGTT	2																																																																											2
AAGAAT/ATTCTT	1																																																																											1
AAGACC/CTTGGT	2	2																																																																										4
AAGATT/AATCTT	1																																																																											1
AAGCAG/CTGCTT	1																																																																											1
AAGCGG/CCGCTT	1																																																																											1
AAGCTC/AGCTTG	1																																																																											1
AAGCTG/AGCTTC	1																																																																											1
AAGGAC/CCTTGT	1																																																																											1
AAGGAG/CCTTCT	1																																																																											1
AAGGGG/CCCCTT	1																																																																											1
AAGTAT/ACTTAT	1																																																																											1
AAGTGC/ACTTGC	2																																																																											2
AATAGC/ATTGCT	1																																																																											1
AATAGT/ACTATT	1																																																																											1
AATATG/ATATTC	2																																																																											2
AATATT/AATATT	1																																																																											1
AATCAG/ATTCTG		1																																																																										1
AATCAT/ATGATT	2																																																																											2
AATCCT/AGGATT	1																																																																											1
AATCGG/ATTCCG	1																																																																											1
AATCTC/AGATTG	2	1																																																																										3
AATGAC/ATTGTC	2																																																																											2
AATGAG/ATTCTC	1																																																																											1
AATGAT/ATCATT	1																																																																											1
AATGGC/ATTGCC	2																																																																											2
AATGGG/ATTCCC	1																																																																											1
AATGGT/ACCATT	1																																																																											1
AATGTC/ACATTG	4																																																																											4
ACACAT/ATGTGT	2																																																																											2
ACACCG/CGGTGT	1																																																																											1
ACACCT/AGGTGT	1																																																																											1
ACACTC/AGTGTG	1																																																																											1
ACACTG/AGTGTC	2			1																																																																								3
ACAGAT/ATCTGT	2																																																																											2
ACAGCC/CTGTGG	1																																																																											1
ACAGCG/CGCTGT	1																																																																											1
ACAGTG/ACTGTC	2	1																																																																										3
ACATAG/ATGTCT	2																																																																											2
ACATCT/AGATGT	1																																																																											1
ACCAGG/CCTGGT	3																																																																											3
ACCAGT/ACTGGT	1																																																																											1
ACCGGC/CCGGTG	1																																																																											1
ACCGGG/CCCGGT	1																																																																											1
ACCGTG/ACGGTC	1																																																																											1
ACCTAT/AGGTAT	1																																																																											1
ACCTGC/AGGTGC	2																																																																											2
ACGAGC/CGTGCT	1																																																																											1
ACGATG/ATCGTC	1																																																																											1
ACGCGC/CGCGTG	1																																																																											1
ACGCGG/CCGCGT	1																																																																											1
ACGGAT/ATCCGT	8	2																																																																										10
ACTGCT/AGCAGT		1																																																																										1
AGAGCT/AGCTCT	2																																																																											2
AGAGGG/CCCTCT	2	1																																																																										3
AGATAT/ATATCT	1																																																																											1
AGATCC/ATCTGG	1																																																																											1
AGCATG/ATGCTC	1																																																																											1
AGCCGC/CGGCTG	1	1																																																																										2
AGCGGC/CCGCTG	2																																																																											2
AGCGGG/CCCGCT	1																																																																											1
AGCTAT/AGCTAT	1																																																																											1
AGGATC/ATCCTG	3																																																																											3
AGGCCC/CCTGGG	1																																																																											1
AGGCGC/CCTGCG	2																																																																											2
AGGGGG/CCCCCT	2																																																																											2
ATATCC/ATATGG	1																																																																											1
ATCCGC/ATGCGG	1																																																																											1
CCCCCG/CGGGGG	1																																																																											1
CCCGCG/CGCGGG	2																																																																											2
