Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018231205.1/fasta/hub_GCA_018231205.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              313872
Total size of examined sequences (bp):           107186862
Total number of identified SSRs:                 26919
Number of SSR containing sequences:              24313
Number of sequences containing more than 1 SSR:  2080
Number of SSRs present in compound formation:    1790


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	394
2	8333
3	2970
4	8381
5	5837
6	1004

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	14	9	7	4	8	2	1	1	3	2	3	1	4		1				1		2				1	2				2	1		1			1						1				1								1	1	1													90
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	4	4	5	6	3	2	4	1	2	3	2		2		3	1	1		3	1											1	1	1						2						1											1													58
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	6	9	5	6	4	8	7	5		1	1	2	2	1	2	1	2	2	2	1		1		2	1			1			1		1	1					1		1	1											1	2	1	2													88
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	25	20	20	12	12	9	7	3	3	3		5	3	4	1	2		2	2	3	2			1			2		2				1	2	1	1															1	1		2	1		2	2											1	158
AC	-	-	-	480	310	263	190	108	61	58	38	31	12	12	11	6	6	3	5	9	5	1	3		4	2		1		1	1	2	1		3	4																																																			1631
AG	-	-	-	88	30	28	11	6	3	1	2	1	1																																																																										171
AT	-	-	-	389	194	134	88	50	25	14	6	2		1	1	1																																																																							905
CA	-	-	-	275	186	144	97	74	44	29	19	14	12	9	8	6	10	3	4	5	1	5	3	1	3	1	1	1	1	1		1		2	1	4																																																			965
CG	-	-	-	5	1	1																																																																																	7
CT	-	-	-	52	30	19	10	4	2	4					2																																																																								123
GA	-	-	-	61	27	17	6	6	1		2		1	1	2																																																																								124
GC	-	-	-	18	2	2																																																																																	22
GT	-	-	-	488	344	329	205	140	90	67	50	34	34	13	17	19	10	8	13	4	5	2	11	4	5	6	4	2	1	5	1		2	2	5	5																																																			1925
TA	-	-	-	494	213	148	96	37	14	5	12	2	2	2	1																																																																								1026
TC	-	-	-	90	57	30	20	13	7	2	5	1									1																																																																		226
TG	-	-	-	417	251	183	92	72	42	26	20	12	10	15	4	12	4	5	8	3	3	4	1	3	1	1	1	3	1	1	1	1		3	3	5																																																			1208
AAC	-	-	35	10	2	2			1																																																																														50
AAG	-	-	19	6	3																																																																																		28
AAT	-	-	267	37	15	4		1																																																																															324
ACA	-	-	27	15	8																																																																																		50
ACC	-	-	7	1	1																																																																																		9
ACT	-	-	12	1																																																																																			13
AGA	-	-	9	1																																																																																			10
AGC	-	-		2	1																																																																																		3
AGG	-	-	5																																																																																				5
AGT	-	-	13																																																																																				13
ATA	-	-	303	52	7	4	6	2		1	1																																																																												376
ATC	-	-	19	9	2																																																																																		30
ATG	-	-	11	3	2																																																																																		16
ATT	-	-	169	44	8	5	2																																																																																228
CAA	-	-	28	5	2																																																																																		35
CAC	-	-	6			1						1																																																																											8
CAG	-	-	4		1					1																																																																													6
CAT	-	-	10																																																																																				10
CCA	-	-	1		1		1																																																																																3
CCG	-	-	4	3				1																																																																															8
CCT	-	-	7	3																																																																																			10
CGC	-	-	9	2			1	1																																																																															13
CGG	-	-	6	1																																																																																			7
CTA	-	-	7	1																																																																																			8
CTC	-	-	5	9	2																																																																																		16
CTG	-	-	3		2	2																																																																																	7
CTT	-	-	13	5	3																																																																																		21
GAA	-	-	49	25	4																																																																																		78
GAC	-	-	2																																																																																				2
GAG	-	-	22	7	1																																																																																		30
GAT	-	-	6	4	1	1																																																																																	12
GCA	-	-	2	1		1	1		1																																																																														6
GCC	-	-	2	1																																																																																			3
GCG	-	-	13	2	1																																																																																		16
GCT	-	-	3	2			1	2			1					1																																																																							10
GGA	-	-	1			1																																																																																	2
GGC	-	-	4	2	1							1																																																																											8
GGT	-	-	1	3																																																																																			4
GTA	-	-	8	2			1																																																																																11
GTC	-	-	1																																																																																				1
GTG	-	-	3		2																																																																																		5
GTT	-	-	12	3		1																																																																																	16
TAA	-	-	212	49	12		1	1	1																																																																														276
TAC	-	-	8	3		1						1																																																																											13
TAG	-	-	6	5	5																																																																																		16
TAT	-	-	320	48	6	3																																																																																	377
TCA	-	-	21	7	4	1																																																																																	33
TCC	-	-	8	7																																																																																			15
TCG	-	-	3	4																																																																																			7
TCT	-	-	25	14	3																																																																																		42
TGA	-	-	11	2	2																																																																																		15
TGC	-	-	2	1																																																																																			3
TGG	-	-	5																																																																																				5
TGT	-	-	69	22	5	3																																																																																	99
TTA	-	-	356	70	13	4	2				1																																																																												446
TTC	-	-	37	14	3	2	1																																																																																57
TTG	-	-	33	14	5	2	1																																																																																55
AAAC	-	12	4	1																																																																																			17
AAAG	-	16	7	3																																																																																			26
AAAT	-	252	40	11	3	4	1																																																																																311
AACA	-	6	1	1																																																																																			8
AACG	-		1																																																																																				1
AAGA	-	37	5		2																																																																																		44
AAGC	-	1																																																																																					1
AAGG	-	1																																																																																					1
AAGT	-	4	4			1																																																																																	9
AATA	-	370	74	16	5	2	2	1	1	1																																																																													472
AATC	-	9																																																																																					9
AATG	-	26	5	2	2																																																																																		35
AATT	-	22	6	2																																																																																			30
ACAA	-	10	6	2	2			1																																																																															21
ACAG	-	51	10			1		1																																																																															63
ACAT	-	155	35	7	2					1								1																																																																					201
ACCA	-	1															1				1																																																																		3
ACCG	-	1																1																																																																					2
ACCT	-	2																																																																																					2
ACGA	-	1																																																																																					1
ACGC	-	4	2	2		1																																																																																	9
ACGG	-	2																																																																																					2
ACGT	-	1																																																																																					1
ACTA	-	2																																																																																					2
ACTC	-	2																																																																																					2
ACTG	-	1																																																																																					1
ACTT	-	3																																																																																					3
AGAA	-	65	19	5	3	1	1						1																																																																										95
AGAC	-	5		1																																																																																			6
AGAT	-	6	3	3																																																																																			12
AGCT	-	1																																																																																					1
AGGA	-	1	1																																																																																				2
AGGT	-	6		1																																																																																			7
AGTA	-	2	1																																																																																				3
AGTG	-	1																																																																																					1
ATAA	-	265	37	8	2	1		1																																																																															314
ATAC	-	477	118	24	6	1	2		1																																																																														629
ATAG	-	19	4	3	1																																																																																		27
ATCA	-	4																																																																																					4
ATCC	-	18	6																																																																																				24
ATCG	-	1																																																																																					1
ATCT	-	8	6	4		1				1																																																																													20
ATGA	-	133	17	6																																																																																			156
ATGC	-	2																																																																																					2
ATGG	-	11		1																																																																																			12
ATGT	-	72	18	3	2			1																																																																															96
ATTA	-	12	3	1																																																																																			16
ATTC	-	66	7	4	1									1																																																																									79
ATTG	-	13	1	2																																																																																			16
ATTT	-	255	47	10	3	2			1																																																																														318
CAAA	-	6	1			1			1																																																																														9
CAAC	-	2	1																																																																																				3
CAAT	-	9	1	1																																																																																			11
CACG	-	17	5	5	3	1	1	1		1																																																																													34
CACT	-	1							1																																																																														2
CAGA	-	7	1		1																																																																																		9
CATA	-	130	27	7	3	2																																																																																	169
CATC	-	23	6				1																																																																																30
CATG	-	3																																																																																					3
CATT	-	27	3	2	1																																																																																		33
CCAA	-	1									1																																																																												2
CCAT	-	11		1																																																																																			12
CCGT	-	1																																																																																					1
CCTA	-	1	1																																																																																				2
CCTT	-	1																																																																																					1
CGAG	-	1																																																																																					1
CGCA	-	3		2		1			1																																																																														7
CGCC	-	1																																																																																					1
CGCT	-	1																																																																																					1
CGGT	-	1																																																																																					1
CGTG	-	8		1	1	1				1																																																																													12
CTAC	-	4	1																																																																																				5
CTAT	-	6			1																																																																																		7
CTCA	-	3																																																																																					3
CTGA	-	1																																																																																					1
CTGT	-	7	1	1																																																																																			9
CTTA	-	3	2																																																																																				5
CTTC	-	1																																																																																					1
CTTT	-	10	3	2																																																																																			15
GAAA	-	46	22	10	1																																																																																		79
GAAC	-	5																																																																																					5
GAAG	-	1																																																																																					1
GAAT	-	14	6	4							1																																																																												25
GACA	-	9	4																																																																																				13
GACG	-	1																																																																																					1
GATA	-	8	3	1					1																																																																														13
GATG	-	42	13	5		1																																																																																	61
GATT	-	9	1	1		1																																																																																	12
GCAC	-	5	3	4	1		2			1																																																																													16
GCAT	-	1																																																																																					1
GCGT	-	3	1	2																																																																																			6
GGAC	-		1		1																																																																																		2
GGAT	-	8	2	1																																																																																			11
GGTA	-	3	1																																																																																				4
GGTC	-		1																																																																																				1
GGTT	-	3																																																																																					3
GTAA	-	7	2																																																																																				9
GTAC	-	1	1																																																																																				2
GTAG	-	9																																																																																					9
GTAT	-	438	62	13	1	1			1																																																																														516
GTCA	-		1																																																																																				1
GTCC	-		1																																																																																				1
GTCT	-	3																																																																																					3
GTGA	-	8																																																																																					8
GTGC	-	19	11	3		1		1		1				1				1																																																																					38
GTTA	-	2																																																																																					2
GTTC	-	1																																																																																					1
GTTG	-	7	1		1	1																																																																																	10
GTTT	-	10	5		2																																																																																		17
TAAA	-	375	83	22	4	4	3		1																																																																														492
TAAC	-	3	1																																																																																				4
TAAG	-	5	1																																																																																				6
TAAT	-	12	1																																																																																				13
TACA	-	290	101	14	4	4		2																																																																															415
TACC	-	21	2		1	1																																																																																	25
TACG	-	2																																																																																					2
TACT	-	8	1																																																																																				9
TAGA	-	20	6	3	1																																																																																		30
TAGG	-	11																																																																																					11
TAGT	-	3	1																																																																																				4
TATC	-	26	8	2	2		1																																																																																39
TATG	-	541	144	34	7	4		2																																																																															732
TATT	-	270	53	14	7			1																																																																															345
TCAA	-	7	4																																																																																				11
TCAC	-	1	3	2																																																																																			6
TCAG	-	2																																																																																					2
TCAT	-	20	3	1																																																																																			24
TCCA	-	21	7	1	1	2																																																																																	32
TCCG	-	2		1		1																																																																																	4
TCCT	-	1																																																																																					1
TCTA	-	13	5	1																																																																																			19
TCTG	-	58	2																																																																																				60
TCTT	-	9	3		2	1																																																																																	15
TGAA	-	30	9	1	1												1																																																																						42
TGAC	-	1																																																																																					1
TGAG	-	3																																																																																					3
TGAT	-	5																																																																																					5
TGCA	-	1																																																																																					1
TGCG	-	11		4	1	1				1																																																																													18
TGCT	-	1																																																																																					1
TGGA	-	3	2																																																																																				5
TGGT	-							1								1																																																																							2
TGTA	-	124	24	1	4	2	1	2		1																																																																													159
TGTC	-	21	11	3		1																																																																																	36
TGTT	-	9																																																																																					9
TTAA	-	19	1																																																																																				20
TTAC	-	6	2																																																																																				8
TTAG	-	1	2																																																																																				3
TTAT	-	309	47	6	3			2																																																																															367
TTCA	-	72	9	3	2		1								1																																																																								88
TTCC	-	1																																																																																					1
TTCT	-	24	5	1		1			1																																																																														32
TTGA	-	5		1																																																																																			6
TTGG	-	2	1	1					1			1	1			2																																																																							9
TTGT	-	9																																																																																					9
TTTA	-	479	94	24	10	2	1																																																																																610
TTTC	-	145	48	23	11	2		2																																																																															231
TTTG	-	18	6	5	3	1	1	1																																																																															35
AAAAC	10																																																																																						10
AAAAG	6																																																																																						6
AAAAT	157	3																																																																																					160
AAACA	6																																																																																						6
AAACG	1																																																																																						1
AAACT	9																																																																																						9
AAAGA	7																																																																																						7
AAAGG	2																																																																																						2
AAAGT	4																																																																																						4
AAATA	219	7	5																																																																																				231
AAATC	13	2	1	1																																																																																			17
AAATG	76	10	1	1	1					1																																																																													90
AAATT	68	1																																																																																					69
AACAA	6																																																																																						6
AACAC	8																																																																																						8
AACAT	8	1																																																																																					9
AACCA	2	1																																																																																					3
AACCT	7	2		2	1	4	1		1	1	1																																																																												20
AACGA	2																																																																																						2
AACGG	1																																																																																						1
AACGT	5	1																																																																																					6
AACTA	8																																																																																						8
AACTC	3																																																																																						3
AACTG	1																																																																																						1
AACTT	1																																																																																						1
AAGAA	7																																																																																						7
AAGAC	2																																																																																						2
AAGAG	3																																																																																						3
AAGAT	4	1																																																																																					5
AAGCA	1	1																																																																																					2
AAGCC	1																																																																																						1
AAGCG	1																																																																																						1
AAGCT	2																																																																																						2
AAGGA	1																																																																																						1
AAGGG	1																																																																																						1
AAGGT	2																																																																																						2
AAGTA	4																																																																																						4
AAGTC	1	2																																																																																					3
AAGTG	3																																																																																						3
AAGTT	2																																																																																						2
AATAA	120	8																																																																																					128
AATAC	15	3	1																																																																																				19
AATAG	20	3	1																																																																																				24
AATAT	24	1																																																																																					25
AATCA	9	1	1		1																																																																																		12
AATCG	3																																																																																						3
AATCT	1																																																																																						1
AATGA	66	10	4			1																																																																																	81
AATGC	4																																																																																						4
AATGT	14	3																																																																																					17
AATTA	33	1																																																																																					34
AATTC	23	1	2				1																																																																																27
AATTG	15																																																																																						15
AATTT	66	4																																																																																					70
ACAAA	1																																																																																						1
ACAAG	1																																																																																						1
ACAAT	5	1						1																																																																															7
ACACA	27	2																																																																																					29
ACACG	3																																																																																						3
ACACT	6	1																																																																																					7
ACAGA	1																																																																																						1
ACAGT	5																																																																																						5
ACATA	3																																																																																						3
ACATG	2																																																																																						2
ACATT	7	2	1		1																																																																																		11
ACCAA	2																																																																																						2
ACCAT	2																																																																																						2
ACCCG	1																																																																																						1
ACCGC	1																																																																																						1
ACCTA	4	2		1							1																																																																												8
ACCTT	3																																																																																						3
ACGAA	1																																																																																						1
ACGAC	3																																																																																						3
ACGCA	1																																																																																						1
ACGGG	1																																																																																						1
ACGTT	2																																																																																						2
ACTAA	4																																																																																						4
ACTAC	4																																																																																						4
ACTAT	2	1																																																																																					3
ACTCA	1																																																																																						1
ACTCC	1																																																																																						1
ACTCT	2																																																																																						2
ACTGA	2	1																																																																																					3
ACTGG	3																																																																																						3
ACTGT	2	1	1																																																																																				4
ACTTC	1																																																																																						1
ACTTG	2																																																																																						2
ACTTT	6																																																																																						6
AGAAA	7	1																																																																																					8
AGAAC	1																																																																																						1
AGAAG	1																																																																																						1
AGAAT	8	1	1																																																																																				10
AGACA	2																																																																																						2
AGACC	2																																																																																						2
AGAGA	3																																																																																						3
AGAGC		1																																																																																					1
AGAGG		1																																																																																					1
AGAGT	2	1																																																																																					3
AGATA	5																																																																																						5
AGATT	3																																																																																						3
AGCAA	1																																																																																						1
AGCAT	1																																																																																						1
AGCCA	3	1																																																																																					4
AGCCG	1																																																																																						1
AGCTT	2																																																																																						2
AGGAA	1																																																																																						1
AGGCT	1																																																																																						1
AGGTA	1																																																																																						1
AGGTT	13	2		1		1					1																																																																												18
AGTAA	2																																																																																						2
AGTAC	2																																																																																						2
AGTAG	1																																																																																						1
AGTAT	4													1																																																																									5
AGTCA	2																																																																																						2
AGTCC		1																																																																																					1
AGTCT	1																																																																																						1
AGTGA	2																																																																																						2
AGTGC	1																																																																																						1
AGTGG	1																																																																																						1
AGTGT	6	3																																																																																					9
AGTTG	2																																																																																						2
AGTTT	6																																																																																						6
ATAAA	102	2																																																																																					104
ATAAC	4																																																																																						4
ATAAG	3	1																																																																																					4
ATAAT	32																																																																																						32
ATACA	17	3	3																																																																																				23
ATACC	2	1																																																																																					3
ATACG	3	1																																																																																					4
ATACT	1		1																																																																																				2
ATAGA	22	9					1																																																																																32
ATAGC	1																																																																																						1
ATAGG	6																																																																																						6
ATAGT	3																																																																																						3
ATATA	27	1																																																																																					28
ATATC	2																																																																																						2
ATATG	3																																																																																						3
ATATT	18																																																																																						18
ATCAA	5	1	2																																																																																				8
ATCAG	1																																																																																						1
ATCAT	3																																																																																						3
ATCCA	2																																																																																						2
ATCCC	1																																																																																						1
ATCCT	3																																																																																						3
ATCGA	1																																																																																						1
ATCGC	2																																																																																						2
ATCGG	2																																																																																						2
ATCGT	2																																																																																						2
ATCTG	1																																																																																						1
ATCTT	5																																																																																						5
ATGAA	49	6		3	2	2																																																																																	62
ATGAC	2																																																																																						2
ATGAG	2																																																																																						2
ATGAT	2																																																																																						2
ATGCC	1																																																																																						1
ATGCT	3																																																																																						3
ATGGA	1																																																																																						1
ATGGG	1																																																																																						1
ATGGT	4																																																																																						4
ATGTA	9	3	2			1																																																																																	15
ATGTC	1																																																																																						1
ATGTG	3	1																																																																																					4
ATGTT	3																																																																																						3
ATTAA	18																																																																																						18
ATTAC	18																																																																																						18
ATTAG	3																																																																																						3
ATTAT	22																																																																																						22
ATTCA	18	2																																																																																					20
ATTCC	2				2						1		1	1																																																																									7
ATTCG	1																																																																																						1
ATTCT	19			1																																																																																			20
ATTGA	12	2																																																																																					14
ATTGC	2																																																																																						2
ATTGG	2																																																																																						2
ATTGT	11	4																																																																																					15
ATTTA	32																																																																																						32
ATTTC	72	13	3																																																																																				88
ATTTG	11	7																																																																																					18
ATTTT	108	4	1																																																																																				113
CAAAA	9																																																																																						9
CAAAG			1																																																																																				1
CAAAT	10																																																																																						10
CAACA	3	1																																																																																					4
CAAGA	2																																																																																						2
CAATA	11	1																																																																																					12
CAATC	1																																																																																						1
CAATG	1																																																																																						1
CAATT	4																																																																																						4
CACAA	5																																																																																						5
CACAC		1	1																																																																																				2
CACAT	2		1																																																																																				3
CACCA	6		2																																																																																				8
CACCG	2	1																																																																																					3
CACCT	1																																																																																						1
CACGA	1																																																																																						1
CACGG	1																																																																																						1
CACTA	5	2																																																																																					7
CACTG	1																																																																																						1
CACTT		1																																																																																					1
CAGAA	2																																																																																						2
CAGAT		1																																																																																					1
CAGCT	1																																																																																						1
CAGGC	1																																																																																						1
CAGTA	2																																																																																						2
CAGTC	4	5																																																																																					9
CATAA	4																																																																																						4
CATAC	1																																																																																						1
CATAG	4																																																																																						4
CATAT	3																																																																																						3
CATCT	1																																																																																						1
CATTA	4	1	1										1																																																																										7
CATTC	2	1																																																																																					3
CATTG	3																																																																																						3
CATTT	141	36	5	3												1																																																																							186
CCAAA	2																																																																																						2
CCAAG	1																																																																																						1
CCAAT	2																																																																																						2
CCACA	3	2		1			1																																																																																7
CCACG	2																																																																																						2
CCACT	2																																																																																						2
CCAGA	1																																																																																						1
CCAGT	1																																																																																						1
CCATA	1																																																																																						1
CCATC	1																																																																																						1
CCATG	1																																																																																						1
CCATT	2																																																																																						2
CCCCT	1																																																																																						1
CCCGC	1																																																																																						1
CCCTA	1																																																																																						1
CCCTC	2																																																																																						2
CCGTA	1																																																																																						1
CCGTG	1																																																																																						1
CCGTT		1																																																																																					1
CCTAA	11	3							1				2																																																																										17
CCTAC	1																																																																																						1
CCTAG	1																																																																																						1
CCTAT	1																																																																																						1
CCTCA	1																																																																																						1
CCTGC	1																																																																																						1
CCTGT	1																																																																																						1
CCTTT	1																																																																																						1
CGAAA	3																																																																																						3
CGACA	1																																																																																						1
CGACC	1																																																																																						1
CGACG	1																																																																																						1
CGATA	2																																																																																						2
CGCCG	3																																																																																						3
CGCGC	1																																																																																						1
CGCGT	1																																																																																						1
CGCTT	1																																																																																						1
CGGAG	1																																																																																						1
CGGCG	2																																																																																						2
CGGGA	1																																																																																						1
CGGTC	1																																																																																						1
CGGTG	1																																																																																						1
CGTAA	6																																																																																						6
CGTAC	1																																																																																						1
CGTAG	1																																																																																						1
CGTAT	3																																																																																						3
CGTCG	1																																																																																						1
CGTCT	1																																																																																						1
CGTGG	1	1																																																																																					2
CGTGT	2																																																																																						2
CGTTA	3																																																																																						3
CGTTT	1																																																																																						1
CTAAA	5																																																																																						5
CTAAC	26	6	1		1	2		2				1	1																																																																										40
CTAAG	1	1																																																																																					2
CTAAT	2																																																																																						2
CTACG	1																																																																																						1
CTAGA	1																																																																																						1
CTAGT	2	1																																																																																					3
CTATA	3		2																																																																																				5
CTATC	5																																																																																						5
CTATT	10	3	1	1																																																																																			15
CTCCA	1			1	2																																																																																		4
CTCGA	1																																																																																						1
CTCGC	1																																																																																						1
CTCGG	1																																																																																						1
CTCTA	2	1																																																																																					3
CTCTC	3	1																																																																																					4
CTCTG	1																																																																																						1
CTGAA	2																																																																																						2
CTGAG	1																																																																																						1
CTGGA	3																																																																																						3
CTGTA	1																																																																																						1
CTGTG	2																																																																																						2
CTGTT	2																																																																																						2
CTTAA	2																																																																																						2
CTTAC	3																																																																																						3
CTTAT	1																																																																																						1
CTTCA	2																																																																																						2
CTTCC	1	1																																																																																					2
CTTGA	1																																																																																						1
CTTGG		1																																																																																					1
CTTTA	1																																																																																						1
CTTTG	4																																																																																						4
CTTTT	5																																																																																						5
GAAAA	7	2																																																																																					9
GAAAC	2																																																																																						2
GAAAG	2	1																																																																																					3
GAAAT	41	9	2	1				1																																																																															54
GAACA	2																																																																																						2
GAACG	1																																																																																						1
GAACT	2																																																																																						2
GAAGC	1																																																																																						1
GAATA	16	5				1																																																																																	22
GAATG	1		2																																																																																				3
GAATT	14	5	1																																																																																				20
GACAC	3																																																																																						3
GACAG		1																																																																																					1
GACGA	1																																																																																						1
GACTA	3																																																																																						3
GACTG	4																																																																																						4
GAGAA	2																																																																																						2
GAGAG	9																																																																																						9
GAGTA		1																																																																																					1
GAGTT	1																																																																																						1
GATAA	4	1																																																																																					5
GATAC	1																																																																																						1
GATCA	2																																																																																						2
GATGG	1																																																																																						1
GATTA	3																																																																																						3
GATTT	11	3																																																																																					14
GCAAG	1																																																																																						1
GCAAT	2																																																																																						2
GCACA	1																																																																																						1
GCACC	2	1																																																																																					3
GCACG	1																																																																																						1
GCATA	2																																																																																						2
GCATT	1																																																																																						1
GCCAC	1																																																																																						1
GCCAG		1																																																																																					1
GCCGT	1																																																																																						1
GCGAA	1																																																																																						1
GCGAG				1																																																																																			1
GCGCA	1																																																																																						1
GCGCC	1																																																																																						1
GCGCT	1																																																																																						1
GCGGA	1																																																																																						1
GCGGC	1	1																																																																																					2
GCGGT	1																																																																																						1
GCGTA	1																																																																																						1
GCGTG	1																																																																																						1
GCTAT	1																																																																																						1
GCTCA	1																																																																																						1
GCTGA	1																																																																																						1
GCTTA	2																																																																																						2
GGAAG	1																																																																																						1
GGACT	1																																																																																						1
GGAGG	1																																																																																						1
GGAGT	1																																																																																						1
GGATA	1																																																																																						1
GGATC	1																																																																																						1
GGATG	1																																																																																						1
GGATT	1																																																																																						1
GGCCA			1																																																																																				1
GGCCT	1																																																																																						1
GGCGC	3																																																																																						3
GGCGG	1																																																																																						1
GGCGT	2																																																																																						2
GGCTA				1	1																																																																																		2
GGGGA	1																																																																																						1
GGGTA	1																																																																																						1
GGGTT			1																																																																																				1
GGTAA	1																																																																																						1
GGTAC	1																																																																																						1
GGTAG		1																																																																																					1
GGTCA	2																																																																																						2
GGTCC	1																																																																																						1
GGTGC		1																																																																																					1
GGTGT	1	1		1																																																																																			3
GGTTA	26	3		1	2	1	1	1	1	2	1	2	3																																																																										44
GGTTG	1																																																																																						1
GGTTT		2																																																																																					2
GTAAA	4																																																																																						4
GTAAC	4																																																																																						4
GTAAG	3																																																																																						3
GTAAT	10		1		1																																																																																		12
GTACA	3																																																																																						3
GTACG	1																																																																																						1
GTACT	1																																																																																						1
GTAGA		1																																																																																					1
GTAGT	18		1																																																																																				19
GTATA	6	1	1																																																																																				8
GTATC	2																																																																																						2
GTATG	2																																																																																						2
GTATT	4	1																																																																																					5
GTCAA	1																																																																																						1
GTCAC	3																																																																																						3
GTCAG	1																																																																																						1
GTCAT	3																																																																																						3
GTCGT	1	1																																																																																					2
GTCTC	1																																																																																						1
GTCTT	4																																																																																						4
GTGAA	1	1																																																																																					2
GTGAG	1																																																																																						1
GTGAT	1																																																																																						1
GTGCA	1																																																																																						1
GTGGT	9		3																																																																																				12
GTGTA	6		3	1			1																																																																																11
GTGTC	1																																																																																						1
GTGTG	13	3	1																																																																																				17
GTGTT	8																																																																																						8
GTTAC	3	2																																																																																					5
GTTAG	17	5			1		1			1			2																																																																										27
GTTAT	3																																																																																						3
GTTCA	1																																																																																						1
GTTCC	1																																																																																						1
GTTCT		1																																																																																					1
GTTGA	2																																																																																						2
GTTGT	3																																																																																						3
GTTTA	3																																																																																						3
GTTTC	4	1																																																																																					5
GTTTG	1																																																																																						1
GTTTT	5																																																																																						5
TAAAA	156	8																																																																																					164
TAAAC	1																																																																																						1
TAAAG	3																																																																																						3
TAAAT	37																																																																																						37
TAACA	10																																																																																						10
TAACC	10	5				1			2																																																																														18
TAAGA	3	1	1																																																																																				5
TAAGC	1																																																																																						1
TAAGG	8																																																																																						8
TAAGT	2																																																																																						2
TAATA	12																																																																																						12
TAATC	6																																																																																						6
TAATG	9																																																																																						9
TAATT	27		1																																																																																				28
TACAA	18	8	1																																																																																				27
TACAC	3																																																																																						3
TACAG	6																																																																																						6
TACAT	8	2		1																																																																																			11
TACCA	1	1																																																																																					2
TACCC	1																																																																																						1
TACCT	3																																																																																						3
TACGA	1																																																																																						1
TACGG	2																																																																																						2
TACTA	12		1									1																																																																											14
TACTC	1																																																																																						1
TACTG	4																																																																																						4
TACTT	3																																																																																						3
TAGAA	45	20	3	1									1																																																																										70
TAGAG	2																																																																																						2
TAGAT	1	1																																																																																					2
TAGCA	1																																																																																						1
TAGCG	1																																																																																						1
TAGGA	3			1																																																																																			4
TAGGT	16	3	2	1						1			2																																																																										25
TAGTA	9																																																																																						9
TAGTC	1																																																																																						1
TAGTG	3																																																																																						3
TAGTT	2																																																																																						2
TATAA	18																																																																																						18
TATAC	13																																																																																						13
TATAG	9																																																																																						9
TATAT	23	2																																																																																					25
TATCA	3																																																																																						3
TATCC	1	1																																																																																					2
TATCT	5																																																																																						5
TATGA	2																																																																																						2
TATGC	1																																																																																						1
TATGG	2																																																																																						2
TATGT	7																																																																																						7
TATTA	36	3																																																																																					39
TATTC	39	14	3	2	1						1																																																																												60
TATTG	18	3	1																																																																																				22
TATTT	159	10	1						1																																																																														171
TCAAA	27	4	1																																																																																				32
TCAAC	1																																																																																						1
TCAAG	3																																																																																						3
TCAAT	13	2																																																																																					15
TCACA	4																																																																																						4
TCACG	1	1																																																																																					2
TCAGC	1																																																																																						1
TCAGT	1																																																																																						1
TCATA	2																																																																																						2
TCATG	3																																																																																						3
TCATT	14	3																																																																																					17
TCCAA	2																																																																																						2
TCCAG	3																																																																																						3
TCCAT	4												1																																																																										5
TCCCA	1																																																																																						1
TCCGT	1																																																																																						1
TCCTA	2																																																																																						2
TCCTC	2																																																																																						2
TCCTG	1																																																																																						1
TCCTT	1																																																																																						1
TCGAA	3	4																																																																																					7
TCGAC	1																																																																																						1
TCGAG	1																																																																																						1
TCGCG	1																																																																																						1
TCGGT	1																																																																																						1
TCGTA	2																																																																																						2
TCGTT	1																																																																																						1
TCTAA	3	1																																																																																					4
TCTAC				1																																																																																			1
TCTAG	3																																																																																						3
TCTAT	9	1	1																																																																																				11
TCTCA	3																																																																																						3
TCTCT	1																																																																																						1
TCTGC	1																																																																																						1
TCTGT	1																																																																																						1
TCTTA	1																																																																																						1
TCTTC	2																																																																																						2
TCTTG	1																																																																																						1
TCTTT	7																																																																																						7
TGAAA	111	25	7	3	2	3			1				1																																																																										153
TGAAG	1																																																																																						1
TGAAT	14	2	3																																																																																				19
TGACA	5																																																																																						5
TGACG	1																																																																																						1
TGAGA	3																																																																																						3
TGAGT	1																																																																																						1
TGATA	2																																																																																						2
TGATC	1																																																																																						1
TGATG	4																																																																																						4
TGATT	12	4																																																																																					16
TGCAC	1																																																																																						1
TGCAG	2																																																																																						2
TGCAT	2																																																																																						2
TGCGC	1																																																																																						1
TGCTA	1																																																																																						1
TGCTC	1																																																																																						1
TGCTG	2																																																																																						2
TGCTT	3																																																																																						3
TGGAA	5																																																																																						5
TGGAC	1	1																																																																																					2
TGGAG		1																																																																																					1
TGGAT	2																																																																																						2
TGGCG	1																																																																																						1
TGGTA	4																																																																																						4
TGGTC	2																																																																																						2
TGGTG	4																																																																																						4
TGTAA	9	3												1																																																																									13
TGTAC	1																																																																																						1
TGTAG	4		1																																																																																				5
TGTAT	7																																																																																						7
TGTCC	1																																																																																						1
TGTCG	3																																																																																						3
TGTCT		1																																																																																					1
TGTGA	3																																																																																						3
TGTGG	6																																																																																						6
TGTGT	5	1																																																																																					6
TGTTA	1																																																																																						1
TGTTC	1																																																																																						1
TGTTG	3	2																																																																																					5
TGTTT	6																																																																																						6
TTAAA	33	1																																																																																					34
TTAAC	2																																																																																						2
TTAAG	2																																																																																						2
TTAAT	25	1																																																																																					26
TTACA	12	1																																																																																					13
TTACC	3																																																																																						3
TTACG	3	1																																																																																					4
TTACT	3	1																																																																																					4
TTAGA	1	1																																																																																					2
TTAGC	1																																																																																						1
TTAGG	9	2						1		1		1	2																																																																										16
TTAGT	4																																																																																						4
TTATA	16																																																																																						16
TTATC	10	2	1										1																																																																										14
TTATG	8				1																																																																																		9
TTATT	150	3	1																																																																																				154
TTCAA	14	5	2																																																																																				21
TTCAC	2	1																																																																																					3
TTCAG	1																																																																																						1
TTCAT	19	4																																																																																					23
TTCCA	2	1																																																																																					3
TTCCC	1																																																																																						1
TTCCG	1																																																																																						1
TTCCT	2																																																																																						2
TTCGA	4																																																																																						4
TTCTA	60	16	2	1									1																																																																										80
TTCTC	1																																																																																						1
TTCTG	1																																																																																						1
TTCTT	9																																																																																						9
TTGAA	21	8	1																																																																																				30
TTGAC	3	1																																																																																					4
TTGAT	10																																																																																						10
TTGCA	2																																																																																						2
TTGCG	1																																																																																						1
TTGGC	2																																																																																						2
TTGGT	1																																																																																						1
TTGTA	37	9																																																																																					46
TTGTC	3																																																																																						3
TTGTG	39	1																																																																																					40
TTGTT	7																																																																																						7
TTTAA	40	1																																																																																					41
TTTAC	3																																																																																						3
TTTAG	14																																																																																						14
TTTAT	127	4	1																																																																																				132
TTTCA	119	34	5	5	1	1		1		1																																																																													167
TTTCC	3																																																																																						3
TTTCG	5																																																																																						5
TTTCT	6																																																																																						6
TTTGA	32	8	1																																																																																				41
TTTGC	2																																																																																						2
TTTGG	6																																																																																						6
TTTGT	6																																																																																						6
TTTTA	238	8																																																																																					246
TTTTC	14			1				1																																																																															16
TTTTG	16																																																																																						16
AAAAAC	1																																																																																						1
AAAAAT	10																																																																																						10
AAAACC	1																																																																																						1
AAAACT	1																																																																																						1
AAAATA	5																																																																																						5
AAAATC	12	3	1																																																																																				16
AAAATG	1																																																																																						1
AAAATT	1																																																																																						1
AAACCC	1																																																																																						1
AAAGCA	1																																																																																						1
AAAGTC	8																																																																																						8
AAATAA	8																																																																																						8
AAATAC	3	1																																																																																					4
AAATCA	17																																																																																						17
AAATCC		1																																																																																					1
AAATGA	3	1																																																																																					4
AAATGG	1																																																																																						1
AAATTA	1																																																																																						1
AAATTC	9																																																																																						9
AAGAAC	1																																																																																						1
AAGATA	2																																																																																						2
AAGTCA	7																																																																																						7
AATAAA	3																																																																																						3
AATAAG	1	1																																																																																					2
AATACA	2																																																																																						2
AATAGA		1																																																																																					1
AATATA	1																																																																																						1
AATATG	1																																																																																						1
AATCAA	8																																																																																						8
AATCAG		1																																																																																					1
AATCAT	1																																																																																						1
AATCGC	1																																																																																						1
AATCTC	1																																																																																						1
AATGAA	1																																																																																						1
AATGGC		1																																																																																					1
AATTAA	1																																																																																						1
AATTCA	7	1																																																																																					8
AATTTA	4																																																																																						4
AATTTC	1																																																																																						1
AATTTG	31	4																																																																																					35
AATTTT	4																																																																																						4
ACACAG	1																																																																																						1
ACACCC	1																																																																																						1
ACACGC	4					1				1																																																																													6
ACAGTA	1																																																																																						1
ACATAC	1																																																																																						1
ACATGA	1																																																																																						1
ACATTG	1																																																																																						1
ACCACT	1																																																																																						1
ACCAGT	1																																																																																						1
ACCTTA	2																																																																																						2
ACGAGT	1																																																																																						1
ACGCAC			1		1	1		1																																																																															4
ACGGTG	1																																																																																						1
ACTATT	1																																																																																						1
ACTCAA	1																																																																																						1
ACTCAC		2																																																																																					2
ACTCTA	1																																																																																						1
ACTGCT	1																																																																																						1
ACTGGT	1																																																																																						1
AGAACG	1																																																																																						1
AGAAGG		2																																																																																					2
AGAATA	3																																																																																						3
AGAATC	2																																																																																						2
AGATTT	1																																																																																						1
AGCAAT	1																																																																																						1
AGCTGC	1																																																																																						1
AGGAAT	1																																																																																						1
AGGAGT	1																																																																																						1
AGGTGG	1																																																																																						1
AGTAAA	1																																																																																						1
AGTCAA	7	2																																																																																					9
AGTGGG	2																																																																																						2
ATAAAA	3																																																																																						3
ATAAAG	1																																																																																						1
ATAAAT	3																																																																																						3
ATAACT	1																																																																																						1
ATAAGA	2																																																																																						2
ATAATC		1																																																																																					1
ATAATT	1																																																																																						1
ATACAA	1																																																																																						1
ATACAT	1																																																																																						1
ATACCT	1																																																																																						1
ATAGAA	2																																																																																						2
ATAGCC	1																																																																																						1
ATAGTT	1																																																																																						1
ATATAC	1																																																																																						1
ATATGA	1	1																																																																																					2
ATATGT	1																																																																																						1
ATATTT	1																																																																																						1
ATCAAA	6																																																																																						6
ATCAAG	1																																																																																						1
ATCAGT	1																																																																																						1
ATCATG	1																																																																																						1
ATCCTG	1																																																																																						1
ATCTTC	1																																																																																						1
ATCTTT	1																																																																																						1
ATGAAT	4																																																																																						4
ATGATT	2		1																																																																																				3
ATGCAT	2																																																																																						2
ATGGAT	1																																																																																						1
ATTAGA	1																																																																																						1
ATTAGG	1																																																																																						1
ATTATA	1																																																																																						1
ATTATC	1																																																																																						1
ATTCAA	8	2																																																																																					10
ATTCGC	3	1																																																																																					4
ATTCGT	1																																																																																						1
ATTCTA	1																																																																																						1
ATTGTC	1																																																																																						1
ATTGTT	1																																																																																						1
ATTTAC	1																																																																																						1
ATTTAT	1																																																																																						1
ATTTCT	2																																																																																						2
ATTTGA	6	1																																																																																					7
ATTTGT	1																																																																																						1
ATTTTA	1																																																																																						1
ATTTTC	2																																																																																						2
ATTTTG	12	2																																																																																					14
ATTTTT	12																																																																																						12
CAAAAT	5	1		1																																																																																			7
CAAACT	1																																																																																						1
CAAAGA	1																																																																																						1
CAAAGT	1																																																																																						1
CAAATT	5																																																																																						5
CAAGAC	3																																																																																						3
CAATAT	1																																																																																						1
CAATGA	1																																																																																						1
CAATTT	1																																																																																						1
CACACG	9	1	1	1		2						1																																																																											15
CACACT	1	1																																																																																					2
CACCGC	1																																																																																						1
CACCGT		1																																																																																					1
CACGCA	5	3	1			1	1	1																																																																															12
CACGCG	1																																																																																						1
CACTCA	1																																																																																						1
CACTCG	1																																																																																						1
CACTGT	1																																																																																						1
CAGTGC	2																																																																																						2
CATATA	1																																																																																						1
CATCTC	1																																																																																						1
CATCTT	1																																																																																						1
CATGAT	1																																																																																						1
CATTCG	1																																																																																						1
CCACCG	2																																																																																						2
CCCCCG	3																																																																																						3
CCCCTC			1																																																																																				1
CCCCTG	1																																																																																						1
CCCTCG		1																																																																																					1
CCCTCT	1																																																																																						1
CCGAAA	1																																																																																						1
CCGACC			4																																																																																				4
CCGCCA	1																																																																																						1
CCGCCC	1																																																																																						1
CCGTAG	1																																																																																						1
CCGTGT		1																																																																																					1
CCTCCG		1																																																																																					1
CCTCGC			1																																																																																				1
CGACTA	1																																																																																						1
CGATTT	1																																																																																						1
CGCACA	4	2																																																																																					6
CGCACG	1																																																																																						1
CGCAGC	2																																																																																						2
CGCCCA			1																																																																																				1
CGCCCG	1																																																																																						1
CGCGCA		1																																																																																					1
CGCGGA	1																																																																																						1
CGCTCC			1																																																																																				1
CGCTGC	1																																																																																						1
CGGATA	2																																																																																						2
CGTAAA	1																																																																																						1
CGTGTC		1																																																																																					1
CGTGTG	3	2	1	1																																																																																			7
CTACAC	1																																																																																						1
CTACTC	1																																																																																						1
CTATAT	1																																																																																						1
CTCACA	1																																																																																						1
CTCACT		1																																																																																					1
CTCCCT	2																																																																																						2
CTCTAC	1																																																																																						1
CTCTGG		1																																																																																					1
CTGATT	2	1																																																																																					3
CTGCAG	1																																																																																						1
CTGCGG		1																																																																																					1
CTGTCG	1																																																																																						1
CTTAGG	1																																																																																						1
CTTCGG	1																																																																																						1
CTTGAG	1																																																																																						1
GAAAGT	1																																																																																						1
GAATAA	2																																																																																						2
GAATCA	1																																																																																						1
GAATTT	5	2																																																																																					7
GACTGA	1																																																																																						1
GAGCGC	1																																																																																						1
GAGGCG			1																																																																																				1
GAGGGA	2																																																																																						2
GAGTGC	1	1																																																																																					2
GAGTGT	1	2																																																																																					3
GATGAA	1																																																																																						1
GATTTT	4																																																																																						4
GCACAC				1																																																																																			1
GCACTC	1																																																																																						1
GCACTG		1	1																																																																																				2
GCCGAA	6	2																																																																																					8
GCCGCA	2																																																																																						2
GCGAAT	4	2																																																																																					6
GCGCAG	2																																																																																						2
GCGCGT	1																																																																																						1
GCGGCT		1																																																																																					1
GCGGTC		1																																																																																					1
GCGTGC	1																																																																																						1
GCGTGT	5	3	1	3			1																																																																																13
GCTATA	1																																																																																						1
GCTCCA		1																																																																																					1
GCTGAA	1																																																																																						1
GCTGGT	2																																																																																						2
GCTTCG	1	1																																																																																					2
GGAAGT	1	1																																																																																					2
GGAATT	1																																																																																						1
GGAGCG	1			1																																																																																			2
GGCAGG	1																																																																																						1
GGCGGG	1																																																																																						1
GGCGGT	1																																																																																						1
GGGAAG	1																																																																																						1
GGGAGA		1	2																																																																																				3
GGGTAC	1																																																																																						1
GGTGAG	1		1																																																																																				2
GGTGCG		1		2																																																																																			3
GGTGTG		1																																																																																					1
GTACGT	1																																																																																						1
GTATAT	1																																																																																						1
GTATGT	1																																																																																						1
GTCAAA	6	1																																																																																					7
GTCACC		1																																																																																					1
GTCAGT	1																																																																																						1
GTCCCG	1																																																																																						1
GTCGCG	1																																																																																						1
GTCGGA	2																																																																																						2
GTCTTG	2																																																																																						2
GTGAGT	1																																																																																						1
GTGCGC	1	1																																																																																					2
GTGCGT	7	2	1	2	1			1																																																																															14
GTGGCA			1																																																																																				1
GTGTGA	3																																																																																						3
GTGTGC	28	12	8			1	2		1																																																																														52
GTGTGG	2																																																																																						2
GTTAAG	1																																																																																						1
GTTACC	1																																																																																						1
GTTCAG	1																																																																																						1
GTTGTG	1																																																																																						1
GTTTAA	1																																																																																						1
GTTTCG	1																																																																																						1
GTTTTA	1																																																																																						1
GTTTTT	1																																																																																						1
TAAAAA	7																																																																																						7
TAAAAG	1																																																																																						1
TAAAAT	1																																																																																						1
TAAAGA	1																																																																																						1
TAAATA	2																																																																																						2
TAAATT	2																																																																																						2
TAACAT	1																																																																																						1
TAACGC	1																																																																																						1
TAAGAA	2																																																																																						2
TAAGAT	1																																																																																						1
TAAGGT	1	1																																																																																					2
TAATAT	2																																																																																						2
TAATTT	1																																																																																						1
TACAAA	1	1																																																																																					2
TACCAC	1																																																																																						1
TAGAAA	3																																																																																						3
TAGATA	1																																																																																						1
TAGCAA	1																																																																																						1
TAGGAA	1																																																																																						1
TAGTTC	2																																																																																						2
TATAAA	1																																																																																						1
TATAAT	1																																																																																						1
TATACC	2																																																																																						2
TATACT	1																																																																																						1
TATAGC	1																																																																																						1
TATATG	1																																																																																						1
TATCAA	1																																																																																						1
TATCCG	1																																																																																						1
TATGGA	1																																																																																						1
TATGGT	1																																																																																						1
TATGTA	1																																																																																						1
TATTCA	1																																																																																						1
TATTGC	1																																																																																						1
TATTGT	1																																																																																						1
TATTTC	1																																																																																						1
TATTTG	1	1																																																																																					2
TATTTT	6																																																																																						6
TCAAAA	12	1	1																																																																																				14
TCAAAG	4	1																																																																																					5
TCAAAT	8	1																																																																																					9
TCACAC	1																																																																																						1
TCACGG	1																																																																																						1
TCAGAA	2																																																																																						2
TCATCC	1																																																																																						1
TCATCG	1																																																																																						1
TCATGG	1																																																																																						1
TCCCGG	1																																																																																						1
TCCTAC	1																																																																																						1
TCCTAG	1	2																																																																																					3
TCGCAC		1																																																																																					1
TCGGCG	1																																																																																						1
TCGGCT	2																																																																																						2
TCTCGT	1																																																																																						1
TCTGAC	1																																																																																						1
TCTTAT	2																																																																																						2
TCTTTG	1																																																																																						1
TGAAAA	3																																																																																						3
TGATTC	2	1																																																																																					3
TGATTT	7	1																																																																																					8
TGCAGG			1																																																																																				1
TGCATA	1																																																																																						1
TGCGTG	9				1			1																																																																															11
TGCTGG				1																																																																																			1
TGGTGA	1																																																																																						1
TGTAAA	1																																																																																						1
TGTACG	1																																																																																						1
TGTATC	1																																																																																						1
TGTCAT	1																																																																																						1
TGTCTG	1																																																																																						1
TGTGAG	2																																																																																						2
TGTGCG	6	1																																																																																					7
TGTGGG		1																																																																																					1
TGTGTA	3																																																																																						3
TGTTGG	1																																																																																						1
TGTTTT	2																																																																																						2
TTAAAA	2																																																																																						2
TTAAAG	1																																																																																						1
TTAACA	1																																																																																						1
TTAATT	1																																																																																						1
TTACAC	1																																																																																						1
TTACAT	2																																																																																						2
TTACTA	1																																																																																						1
TTAGAA	1																																																																																						1
TTATAT	2																																																																																						2
TTATTG	3	1																																																																																					4
TTATTT	3																																																																																						3
TTCAAA	7	1	1																																																																																				9
TTCATT	1		1																																																																																				2
TTCCTA	1																																																																																						1
TTCGAC		1																																																																																					1
TTCTAT	1																																																																																						1
TTCTCT	1																																																																																						1
TTCTTA	7	1																																																																																					8
TTGAAA	1																																																																																						1
TTGAAC	1																																																																																						1
TTGACT	2																																																																																						2
TTGATT	1																																																																																						1
TTGCTA	1																																																																																						1
TTGGTG	1																																																																																						1
TTGTAA	2																																																																																						2
TTGTCA	2																																																																																						2
TTGTGT	1																																																																																						1
TTGTTC	1																																																																																						1
TTTAAC	1																																																																																						1
TTTAAT	1																																																																																						1
TTTATA	2																																																																																						2
TTTATC	1																																																																																						1
TTTATT	9																																																																																						9
TTTCAG	1																																																																																						1
TTTCAT	4																																																																																						4
TTTCTA	2	1																																																																																					3
TTTCTT	1																																																																																						1
TTTGAA	14	1			1																																																																																		16
TTTGAC	31	2	1																																																																																				34
TTTGAG	1																																																																																						1
TTTGAT	22	3																																																																																					25
TTTGTT	2																																																																																						2
TTTTAA	1																																																																																						1
TTTTAT	7																																																																																						7
TTTTCA	2																																																																																						2
TTTTCT	2																																																																																						2
TTTTGA	4	1																																																																																					5
TTTTGT	1																																																																																						1
TTTTTA	7																																																																																						7
TTTTTC	1																																																																																						1
TTTTTG	1																																																																																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	39	34	29	19	16	17	9	4	4	6	2	8	4	8	1	3		2	2	4	2	2		1		1	4		2		2	1	1	3	1	1	1						1				1				1	1		2	2	1	3	2											1	248
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	10	13	10	12	7	10	11	6	2	4	3	2	4	1	5	2	3	2	5	2		1		2	1			1			2	1	2	1					3		1	1			1								1	2	1	3													146
AC/GT	-	-	-	1660	1091	919	584	394	237	180	127	91	68	49	40	43	30	19	30	21	14	12	18	8	13	10	6	7	3	8	3	4	3	7	12	18																																																			5729
AG/CT	-	-	-	291	144	94	47	29	13	7	9	2	2	1	4						1																																																																		644
AT/AT	-	-	-	883	407	282	184	87	39	19	18	4	2	3	2	1																																																																							1931
CG/CG	-	-	-	23	3	3																																																																																	29
AAC/GTT	-	-	204	69	22	8	1		1																																																																														305
AAG/CTT	-	-	152	65	16	2	1																																																																																236
AAT/ATT	-	-	1627	300	61	20	11	4	1	1	2																																																																												2027
ACC/GGT	-	-	23	4	4	1	1					1																																																																											34
ACG/CGT	-	-	6	4																																																																																			10
ACT/AGT	-	-	54	12	5	1	1					1																																																																											74
AGC/CTG	-	-	14	6	4	3	2	2	1	1	1					1																																																																							35
AGG/CCT	-	-	48	26	3	1																																																																																	78
ATC/ATG	-	-	78	25	11	2																																																																																	116
CCG/CGG	-	-	38	11	2		1	2				1																																																																											55
AAAC/GTTT	-	80	23	9	7	2	1	2	1																																																																														125
AAAG/CTTT	-	352	112	44	19	5	1	2	1				1																																																																										537
AAAT/ATTT	-	2575	475	111	37	15	7	5	3	1																																																																													3229
AACC/GGTT	-	16	3	1	1	1		1	1		1	1	1			3	1				1																																																																		32
AACG/CGTT	-	7	1																																																																																				8
AACT/AGTT	-	11	4																																																																																				15
AAGC/CTTG	-	2																																																																																					2
AAGG/CCTT	-	7	1																																																																																				8
AAGT/ACTT	-	38	13			1																																																																																	52
AATC/ATTG	-	61	7	5		1																																																																																	74
AATG/ATTC	-	388	59	23	7		1				1			1	1		1																																																																						482
AATT/AATT	-	65	11	3																																																																																			79
ACAG/CTGT	-	161	29	5	1	2		1																																																																															199
ACAT/ATGT	-	2227	529	103	29	14	3	7	2	2								1																																																																					2917
ACCG/CGGT	-	2	1															1																																																																					4
ACCT/AGGT	-	57	5	1	1	1																																																																																	65
ACGC/CGTG	-	70	22	23	6	6	3	2	1	5				1				1																																																																					140
ACGG/CCGT	-	6	2	1	1	1																																																																																	11
ACGT/ACGT	-	4	1																																																																																				5
ACTC/AGTG	-	19	3	2					1																																																																														25
ACTG/AGTC	-	5	1																																																																																				6
AGAT/ATCT	-	106	35	17	5	1	1		1	1																																																																													167
AGCG/CGCT	-	2																																																																																					2
AGCT/AGCT	-	1																																																																																					1
ATCC/ATGG	-	137	36	9	1	3	1																																																																																187
ATCG/ATCG	-	1																																																																																					1
ATGC/ATGC	-	7																																																																																					7
CCCG/CGGG	-	1																																																																																					1
AAAAC/GTTTT	72																																																																																						72
AAAAG/CTTTT	75	3		1				1																																																																															80
AAAAT/ATTTT	1536	57	9						1																																																																														1603
AAACC/GGTTT	14	3																																																																																					17
AAACG/CGTTT	20	1																																																																																					21
AAACT/AGTTT	56																																																																																						56
AAAGC/CTTTG	11	1	1																																																																																				13
AAAGG/CCTTT	13	1																																																																																					14
AAAGT/ACTTT	33	1																																																																																					34
AAATC/ATTTG	140	30	6	1	1																																																																																		178
AAATG/ATTTC	708	150	27	16	6	7		2	1	2			1			1																																																																							921
AAATT/AATTT	379	9	1																																																																																				389
AACAC/GTGTT	101	7																																																																																					108
AACAG/CTGTT	11	1																																																																																					12
AACAT/ATGTT	51	1			1																																																																																		53
AACCC/GGGTT	1		1																																																																																				2
AACCG/CGGTT	1																																																																																						1
AACCT/AGGTT	139	33	3	6	5	9	3	4	5	6	4	4	12																																																																										233
AACGC/CGTTG	2																																																																																						2
AACGG/CCGTT	5	1																																																																																					6
AACGT/ACGTT	26	4																																																																																					30
AACTC/AGTTG	11																																																																																						11
AACTG/AGTTC	10	1																																																																																					11
AACTT/AAGTT	11																																																																																						11
AAGAC/CTTGT	15	1																																																																																					16
AAGAG/CTCTT	13																																																																																						13
AAGAT/ATCTT	41	6	2										1																																																																										50
AAGCC/CTTGG	7	2																																																																																					9
AAGCG/CGCTT	4																																																																																						4
AAGCT/AGCTT	9	1																																																																																					10
AAGGC/CCTTG	1																																																																																						1
AAGGG/CCCTT	4	1																																																																																					5
AAGGT/ACCTT	27																																																																																						27
AAGTC/ACTTG	13	3																																																																																					16
AAGTG/ACTTC	12	3																																																																																					15
AATAC/ATTGT	143	33	6					1																																																																															183
AATAG/ATTCT	248	72	12	6	1	1	1				1		2																																																																										344
AATAT/ATATT	228	7																																																																																					235
AATCC/ATTGG	12																																																																																						12
AATCG/ATTCG	12	4																																																																																					16
AATCT/AGATT	23	3																																																																																					26
AATGC/ATTGC	17																																																																																						17
AATGG/ATTCC	19	2	2		2						1		2	1																																																																									29
AATGT/ACATT	100	15	5	1	2	1							1	1																																																																									126
AATTC/AATTG	148	27	9				1																																																																																185
ACACC/GGTGT	42	7	7	2			1																																																																																59
ACACG/CGTGT	18	1																																																																																					19
ACACT/AGTGT	55	6	5	1			1																																																																																68
ACAGC/CTGTG	5																																																																																						5
ACAGG/CCTGT	3	1																																																																																					4
ACAGT/ACTGT	27	1	1																																																																																				29
ACATC/ATGTG	17	1	1																																																																																				19
ACATG/ATGTC	16																																																																																						16
ACCAG/CTGGT	5																																																																																						5
ACCAT/ATGGT	19	2																																																																																					21
ACCCG/CGGGT	2																																																																																						2
ACCCT/AGGGT	4	1																																																																																					5
ACCGC/CGGTG	7	3																																																																																					10
ACCGG/CCGGT	2																																																																																						2
ACCGT/ACGGT	6																																																																																						6
ACCTC/AGGTG	3																																																																																						3
ACCTG/AGGTC	3																																																																																						3
ACGAG/CGTCT	3																																																																																						3
ACGAT/ATCGT	16	1																																																																																					17
ACGCC/CGTGG	8	1																																																																																					9
ACGCG/CGCGT	4																																																																																						4
ACGCT/AGCGT	4																																																																																						4
ACGGC/CCGTG	4																																																																																						4
ACGGG/CCCGT	2																																																																																						2
ACGTC/ACGTG	5	1																																																																																					6
ACTAG/AGTCT	11	1																																																																																					12
ACTAT/AGTAT	62	2	5									1		1																																																																									71
ACTCC/AGTGG	6	1		1	2																																																																																		10
ACTCG/AGTCG	3																																																																																						3
ACTCT/AGAGT	10	4		1																																																																																			15
ACTGC/AGTGC	6																																																																																						6
ACTGG/AGTCC	20	7																																																																																					27
AGAGC/CTCTG	3	1																																																																																					4
AGAGG/CCTCT	14	2																																																																																					16
AGATC/ATCTG	5	1																																																																																					6
AGATG/ATCTC	9																																																																																						9
AGCAT/ATGCT	15																																																																																						15
AGCCG/CGGCT	2																																																																																						2
AGCCT/AGGCT	2			1	1																																																																																		4
AGCGC/CGCTG	3																																																																																						3
AGCGG/CCGCT	2																																																																																						2
AGCTC/AGCTG	5																																																																																						5
AGGAT/ATCCT	22	1		1																																																																																			24
AGGCC/CCTGG	2	1	1																																																																																				4
AGGCG/CCTCG	1			1																																																																																			2
AGGGC/CCCTG	1																																																																																						1
AGGGG/CCCCT	5																																																																																						5
ATATC/ATATG	22																																																																																						22
ATCCC/ATGGG	6																																																																																						6
ATCCG/ATCGG	3																																																																																						3
ATCGC/ATGCG	2																																																																																						2
ATGCC/ATGGC	2																																																																																						2
CCCCG/CGGGG	2																																																																																						2
CCGCG/CGCGG	11	1																																																																																					12
AAAAAC/GTTTTT	8																																																																																						8
AAAAAG/CTTTTT	4																																																																																						4
AAAAAT/ATTTTT	80																																																																																						80
AAAACC/GGTTTT	1																																																																																						1
AAAACT/AGTTTT	2																																																																																						2
AAAAGC/CTTTTG	1																																																																																						1
AAAAGT/ACTTTT	2																																																																																						2
AAAATC/ATTTTG	110	12	2	1																																																																																			125
AAAATG/ATTTTC	17	1	1																																																																																				19
AAAATT/AATTTT	15																																																																																						15
AAACAC/GTGTTT	1																																																																																						1
AAACCC/GGGTTT	1																																																																																						1
AAACCG/CGGTTT	2																																																																																						2
AAACGT/ACGTTT	1																																																																																						1
AAACTC/AGTTTG	3																																																																																						3
AAACTG/AGTTTC	1																																																																																						1
AAACTT/AAGTTT	1																																																																																						1
AAAGAC/CTTTGT	2																																																																																						2
AAAGAG/CTCTTT	1																																																																																						1
AAAGAT/ATCTTT	6																																																																																						6
AAAGTC/ACTTTG	66	6	1																																																																																				73
AAAGTG/ACTTTC	1																																																																																						1
AAAGTT/AACTTT	2																																																																																						2
AAATAC/ATTTGT	9	3																																																																																					12
AAATAG/ATTTCT	11	2																																																																																					13
AAATAT/ATATTT	13																																																																																						13
AAATCC/ATTTGG		1																																																																																					1
AAATCG/ATTTCG	1																																																																																						1
AAATCT/AGATTT	1																																																																																						1
AAATGG/ATTTCC	1																																																																																						1
AAATGT/ACATTT	4																																																																																						4
AAATTC/AATTTG	100	13	1		1																																																																																		115
AAATTG/AATTTC	3																																																																																						3
AAATTT/AAATTT	6																																																																																						6
AACAAG/CTTGTT	2																																																																																						2
AACAAT/ATTGTT	5	1																																																																																					6
AACACC/GGTGTT	2																																																																																						2
AACAGT/ACTGTT	1																																																																																						1
AACATG/ATGTTC	1																																																																																						1
AACATT/AATGTT	2																																																																																						2
AACCAC/GGTTGT	1																																																																																						1
AACCAT/ATGGTT	1																																																																																						1
AACCTG/AGGTTC	1																																																																																						1
AACCTT/AAGGTT	4	1																																																																																					5
AACGAG/CGTTCT	2																																																																																						2
AACGCT/AGCGTT	1																																																																																						1
AACGGT/ACCGTT	1																																																																																						1
AACTAG/AGTTCT	2																																																																																						2
AACTAT/AGTTAT	2																																																																																						2
AACTCT/AGAGTT	1																																																																																						1
AACTTG/AAGTTC	1																																																																																						1
AAGAAT/ATTCTT	19	2																																																																																					21
AAGACC/CTTGGT	5																																																																																						5
AAGATC/ATCTTG	1																																																																																						1
AAGATG/ATCTTC	3																																																																																						3
AAGATT/AATCTT	1																																																																																						1
AAGCCG/CGGCTT	10	3																																																																																					13
AAGCCT/AGGCTT	1																																																																																						1
AAGCTC/AGCTTG	1																																																																																						1
AAGCTG/AGCTTC	1																																																																																						1
AAGGAG/CCTTCT		2																																																																																					2
AAGGGG/CCCCTT	1																																																																																						1
AAGTAT/ACTTAT	1																																																																																						1
AAGTCG/ACTTCG		1																																																																																					1
AAGTGG/ACTTCC	1	1																																																																																					2
AAGTGT/ACACTT	1																																																																																						1
AATACG/ATTCGT	1																																																																																						1
AATAGC/ATTGCT	4																																																																																						4
AATAGG/ATTCCT	3																																																																																						3
AATAGT/ACTATT	2																																																																																						2
AATATC/ATATTG	2																																																																																						2
AATATG/ATATTC	7	1																																																																																					8
AATATT/AATATT	2																																																																																						2
AATCAG/ATTCTG	9	3																																																																																					12
AATCAT/ATGATT	3	1	1																																																																																				5
AATCCT/AGGATT	1																																																																																						1
AATCGC/ATTGCG	1																																																																																						1
AATCTC/AGATTG	1																																																																																						1
AATGAC/ATTGTC	5																																																																																						5
AATGAT/ATCATT	1																																																																																						1
AATGCG/ATTCGC	8	3																																																																																					11
AATGGC/ATTGCC		1																																																																																					1
AATGTC/ACATTG	1																																																																																						1
AATTAC/AATTGT	2																																																																																						2
AATTAG/AATTCT	3																																																																																						3
AATTAT/AATTAT	3																																																																																						3
AATTCC/AATTGG	1																																																																																						1
ACACAG/CTGTGT	2																																																																																						2
ACACAT/ATGTGT	5																																																																																						5
ACACCC/GGGTGT	3	2																																																																																					5
ACACCT/AGGTGT	1																																																																																						1
ACACGC/CGTGTG	80	26	14	8	3	6	4	4	1	1		1																																																																											148
ACACGG/CCGTGT		2																																																																																					2
ACACGT/ACGTGT	2																																																																																						2
ACACTC/AGTGTG	11	5																																																																																					16
ACACTG/AGTGTC	1																																																																																						1
ACAGAT/ATCTGT	1																																																																																						1
ACAGCG/CGCTGT	1																																																																																						1
ACAGTG/ACTGTC	1																																																																																						1
ACATAT/ATATGT	7																																																																																						7
ACCACT/AGTGGT	2																																																																																						2
ACCAGC/CTGGTG	2			1																																																																																			3
ACCAGT/ACTGGT	2																																																																																						2
ACCATC/ATGGTG	1																																																																																						1
ACCATG/ATGGTC	1																																																																																						1
ACCCCG/CGGGGT			4																																																																																				4
ACCCGC/CGGGTG		1		2																																																																																			3
ACCCGT/ACGGGT	1																																																																																						1
ACCCTC/AGGGTG	1		1																																																																																				2
ACCGCC/CGGTGG	5																																																																																						5
ACCGCG/CGCGGT	1	1																																																																																					2
ACCGGG/CCCGGT	2																																																																																						2
ACCGTC/ACGGTG	1	2																																																																																					3
ACCGTG/ACGGTC	1																																																																																						1
ACCTAT/AGGTAT	3																																																																																						3
ACCTCC/AGGTGG	1																																																																																						1
ACCTCT/AGAGGT	1																																																																																						1
ACCTGC/AGGTGC			1																																																																																				1
ACGACT/AGTCGT	1																																																																																						1
ACGAGT/ACTCGT	1																																																																																						1
ACGATG/ATCGTC	1																																																																																						1
ACGCCC/CGTGGG			1																																																																																				1
ACGCCG/CGGCGT	1																																																																																						1
ACGCGC/CGCGTG	5	2																																																																																					7
ACGCGG/CCGCGT	1																																																																																						1
ACGGAT/ATCCGT	3																																																																																						3
ACGGCT/AGCCGT	1																																																																																						1
ACTAGG/AGTCCT	1	2																																																																																					3
ACTCCC/AGTGGG	2																																																																																						2
ACTCCG/AGTCGG	2																																																																																						2
ACTCCT/AGGAGT	3																																																																																						3
ACTCGC/AGTGCG	3	2																																																																																					5
ACTCTC/AGAGTG		1																																																																																					1
ACTCTG/AGAGTC	1																																																																																						1
ACTGAG/AGTCTC	1																																																																																						1
ACTGAT/AGTATC	1																																																																																						1
ACTGCC/AGTGGC			1																																																																																				1
ACTGCT/AGCAGT	1																																																																																						1
ACTGGC/AGTGCC	2	1	1																																																																																				4
AGAGCC/CTCTGG		1																																																																																					1
AGAGGG/CCCTCT	5	1	2																																																																																				8
AGATAT/ATATCT	2																																																																																						2
AGATGG/ATCTCC	1																																																																																						1
AGCCAT/ATGGCT	1																																																																																						1
AGCCGC/CGGCTG	4	2																																																																																					6
AGCGCG/CGCGCT	1																																																																																						1
AGCGGC/CCGCTG	1																																																																																						1
AGCGGG/CCCGCT	1		1	1																																																																																			3
AGCTAT/AGCTAT	2																																																																																						2
AGCTCC/AGCTGG		1																																																																																					1
AGCTGC/AGCTGC	2																																																																																						2
AGGATC/ATCCTG	1																																																																																						1
AGGATG/ATCCTC	1																																																																																						1
AGGCGC/CCTGCG	2																																																																																						2
AGGCGG/CCGCCT		1	1																																																																																				2
AGGGCG/CCCTCG		1	1																																																																																				2
AGGGGC/CCCCTG	2																																																																																						2
AGGGGG/CCCCCT			1																																																																																				1
ATATCC/ATATGG	2																																																																																						2
ATATGC/ATATGC	3																																																																																						3
ATCATG/ATCATG	2																																																																																						2
CCCCCG/CGGGGG	5																																																																																						5
CCCGCG/CGCGGG	1																																																																																						1
