Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018230845.1/fasta/hub_GCA_018230845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91004
Total size of examined sequences (bp):           28592751
Total number of identified SSRs:                 3778
Number of SSR containing sequences:              3485
Number of sequences containing more than 1 SSR:  226
Number of SSRs present in compound formation:    203


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	340
2	825
3	499
4	838
5	1135
6	141

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	14	6	7	9	3	4	4	4	2	2	2	2	6	1		3	1	1									1	1			1									2					1		1										1	1	80
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	10	7	6	2	2	1	4	4	2	5		2	2	2				2	1		1		2		2	2	1	1				1				1																						68
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	12	7	7	1	9	2	6	4	3	4	1	6	5	4	3	3	3	2	3	1		1	3	1				1				2			1																								95
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	13	12	2	3	4	3	4	5	5	4	2	1	1	2	1	1	3	2	2	1	2		1	3		2		1				2		1			1		2	2				1		1			1					1	1	1	2	1	97
AC	-	-	-	37	13	7	2	3	3			2	1	1				2					1	1				1						1	1	1																																								77
AG	-	-	-	25	17	7	4	3	3	1			1																																																															61
AT	-	-	-	59	34	17	10	3	6	2	4	1	1	2				1																																																										140
CA	-	-	-	24	4	5	5	3	3		1		2		1		1	2	3		1		1	2	1								1																																											60
CG	-	-	-	4																																																																								4
CT	-	-	-	12	13	5	3	1		1	2		1			1	1																																																											40
GA	-	-	-	8	8	4	1	2							1		1																																																											25
GC	-	-	-	8	1																																																																							9
GT	-	-	-	23	14	7	5	4	1		1	1	1	1		1			1	2			1	1				1		1		1	1		2	4																																								74
TA	-	-	-	64	35	21	13	10	4		2	1	6			1		2																																																										159
TC	-	-	-	36	16	9	5	5	3	3	1									1																																																								79
TG	-	-	-	19	23	12	7	5	5	4	1	2	1		1	1		2	2		2	1						1			2			1	1	3	1																																							97
AAC	-	-	2																																																																									2
AAG	-	-	5	1				1																																																																				7
AAT	-	-	43	9	1		2																																																																					55
ACA	-	-	2	1	1																																																																							4
ACC	-	-		1																																																																								1
ACT	-	-	5	1			1																																																																					7
AGA	-	-	2	1																																																																								3
AGC	-	-		1																																																																								1
AGG	-	-	1																																																																									1
AGT	-	-	3																																																																									3
ATA	-	-	34	10	2																																																																							46
ATC	-	-	11	3	2																																																																							16
ATG	-	-	2	2	1		1																																																																					6
ATT	-	-	38	4																																																																								42
CAA	-	-	3	1																																																																								4
CAC	-	-			1																																																																							1
CAG	-	-		1																																																																								1
CAT	-	-	4																																																																									4
CCA	-	-	1																																																																									1
CCG	-	-	1		1																																																																							2
CCT	-	-	1																																																																									1
CGA	-	-	1																																																																									1
CGC	-	-	1	1	1																																																																							3
CGG	-	-	1																																																																									1
CTA	-	-			1																																																																							1
CTC	-	-	1																																																																									1
CTG	-	-		1																																																																								1
CTT	-	-	1	1	1																																																																							3
GAA	-	-	3																																																																									3
GAG	-	-	3																																																																									3
GAT	-	-	4	2																																																																								6
GCA	-	-	2																																																																									2
GCC	-	-	1																																																																									1
GCG	-	-	1																																																																									1
GCT	-	-	1																																																																									1
GGA	-	-	1																																																																									1
GGC	-	-	2					1																																																																				3
GGT	-	-	3																																																																									3
GTA	-	-	4																																																																									4
GTC	-	-			1																																																																							1
GTG	-	-	1																																																																									1
GTT	-	-		1																																																																								1
TAA	-	-	32	9	2			1																																																																				44
TAC	-	-	2																																																																									2
TAG	-	-	4	1		1							1																																																															7
TAT	-	-	29	4	1	1	2																																																																					37
TCA	-	-	15	4	2																																																																							21
TCG	-	-	1																																																																									1
TCT	-	-	2			1																																																																						3
TGA	-	-	24	9	4		1	1																																																																				39
TGG	-	-			1																																																																							1
TGT	-	-	3	3																																																																								6
TTA	-	-	55	14	3	1																																																																						73
TTC	-	-	4			1																																																																						5
TTG	-	-	3	5	1				1																																																																			10
AAAG	-	6	1	1	2																																																																							10
AAAT	-	41	5		1																																																																							47
AACA	-	3																																																																										3
AACT	-			1																																																																								1
AAGA	-	5	2		1																																																																							8
AAGC	-	1																																																																										1
AAGT	-	3																																																																										3
AATA	-	46	11	5									2																																																															64
AATC	-	3																																																																										3
AATG	-	1																																																																										1
AATT	-	3																																																																										3
ACAA	-	2	1																																																																									3
ACAG	-	12																																																																										12
ACAT	-	8																																																																										8
ACCA	-	1																																																																										1
ACGA	-	1																																																																										1
ACGT	-	1																																																																										1
ACTA	-		1																																																																									1
ACTC	-	1																																																																										1
ACTT	-	2																																																																										2
AGAA	-	6	4		1	1																																																																						12
AGAC	-		1																																																																									1
AGCA	-	3																																																																										3
AGCC	-	1																																																																										1
AGGT	-	2	1																																																																									3
AGTA	-	1		1																																																																								2
AGTT	-	1																																																																										1
ATAA	-	30	6	1	2																																																																							39
ATAC	-	8						1																																																																				9
ATAG	-		2																																																																									2
ATCA	-	2																																																																										2
ATCC	-	1	1																																																																									2
ATCT	-	1	1																																																																									2
ATGA	-	3																																																																										3
ATGG	-	1																																																																										1
ATGT	-	5	2																																																																									7
ATTA	-	1																																																																										1
ATTC	-	2	2				1				1	1																																																																7
ATTG	-	3																																																																										3
ATTT	-	41	10	1	1																																																																							53
CAAA	-	2																																																																										2
CAAT	-	2																																																																										2
CAGA	-	3																																																																										3
CAGG	-	1																																																																										1
CATA	-	5																																																																										5
CATC	-	1																																																																										1
CCAT	-	1																																																																										1
CCGT	-	1																																																																										1
CGAA	-	1																																																																										1
CGGT	-	1																																																																										1
CTAC	-	2									1																																																																	3
CTCA	-	1		1																																																																								2
CTGA	-	1																																																																										1
CTGT	-	6																																																																										6
CTTA	-	1																																																																										1
CTTC	-	1																																																																										1
CTTT	-	1																																																																										1
GAAA	-	10	3	4		1																																																																						18
GAAG	-	1																																																																										1
GAAT	-		1																																																																									1
GACA	-	6	1																																																																									7
GAGT	-							1																																																																				1
GATA	-	3																																																																										3
GATG	-	3	2																																																																									5
GCAC	-					1		1																																																																				2
GCAG	-	3																																																																										3
GCAT	-	1																																																																										1
GCGT	-		1																																																																									1
GGAT	-	2																																																																										2
GGCG	-	2																																																																										2
GGGC	-	1																																																																										1
GGTC	-	1																																																																										1
GGTT	-	1																																																																										1
GTAC	-	1																																																																										1
GTAG	-	3	1																																																																									4
GTAT	-	5																																																																										5
GTCC	-	1																																																																										1
GTCT	-	4																																																																										4
GTGA	-	1																																																																										1
GTGC	-	1	1																																																																									2
GTTA	-	3																																																																										3
GTTT	-	1																																																																										1
TAAA	-	54	13	7		1																																																																						75
TAAG	-	1																																																																										1
TAAT	-	3																																																																										3
TACA	-	10	1	1	1					1																																																																		14
TACC	-	4							1																																																																			5
TACT	-	1	1																																																																									2
TAGA	-	2	1																																																																									3
TAGC	-	1																																																																										1
TAGG	-	3																																																																										3
TAGT	-	3																																																																										3
TATC	-	2		1																																																																								3
TATG	-	10	2			1																																																																						13
TATT	-	45	14	2		1																																																																						62
TCAA	-	1																																																																										1
TCAC	-		1																																																																									1
TCAT	-	1	2																																																																									3
TCCA	-	1		1																																																																								2
TCTA	-	1		1																																																																								2
TCTG	-	6	3																																																																									9
TCTT	-	2	2		1																																																																							5
TGAA	-	4		1																																																																								5
TGAC	-		1																																																																									1
TGAT	-	4		1																																																																								5
TGCC	-	2																																																																										2
TGGC	-	1																																																																										1
TGTA	-	8																																																																										8
TGTC	-	4	1															1																																																										6
TTAA	-	5																																																																										5
TTAG	-	2		1																																																																								3
TTAT	-	30	5																																																																									35
TTCA	-	2																																																																										2
TTCT	-	8		1																																																																								9
TTGA	-	2																																																																										2
TTGC	-		1																																																																									1
TTGT	-	1																																																																										1
TTTA	-	51	19	2																																																																								72
TTTC	-	17	9	2	2				1																																																																			31
TTTG	-	5																																																																										5
AAAAC	4																																																																											4
AAAAG	2	1																																																																										3
AAAAT	17	1																																																																										18
AAACA	1																																																																											1
AAACC	2																																																																											2
AAAGA	2																																																																											2
AAAGC	1																																																																											1
AAAGG	2																																																																											2
AAAGT	3																																																																											3
AAATA	21		1																																																																									22
AAATC	6	1																																																																										7
AAATG	5			1																																																																								6
AAATT	17																																																																											17
AACAA	2																																																																											2
AACAC	2																																																																											2
AACAT	2	1																																																																										3
AACCA								1																																																																				1
AACCT	2						1	2		1	1																																																																	7
AACGT	1																																																																											1
AACTC	2																																																																											2
AAGCT	2																																																																											2
AAGGA	2																																																																											2
AAGGT	1	1																																																																										2
AAGTA	3																																																																											3
AAGTG		1																																																																										1
AAGTT	2																																																																											2
AATAA	22	1																																																																										23
AATAC	1																																																																											1
AATAG	3	2	2	1																																																																								8
AATAT	3																																																																											3
AATCA	7																																																																											7
AATCC	1																																																																											1
AATCG	1																																																																											1
AATCT	1																																																																											1
AATGA	8	1																																																																										9
AATGG	1																																																																											1
AATGT	4																																																																											4
AATTA	10																																																																											10
AATTC	3	3																																																																										6
AATTG	6	2																																																																										8
AATTT	4	1																																																																										5
ACAAA	3																																																																											3
ACAAC	1																																																																											1
ACAAT	2																																																																											2
ACACA	1																																																																											1
ACAGA	1																																																																											1
ACATA	1																																																																											1
ACATG	1																																																																											1
ACATT	1																																																																											1
ACCTA			1			1		1		1		1																																																																5
ACCTC		1																																																																										1
ACCTT								1																																																																				1
ACGAA	1																																																																											1
ACGAC		1																																																																										1
ACGAT	1																																																																											1
ACGCA	1																																																																											1
ACGTA	1																																																																											1
ACGTC	1																																																																											1
ACGTT	1																																																																											1
ACTAA			1																																																																									1
ACTAT	2																																																																											2
ACTCC		1																																																																										1
ACTGA	2																																																																											2
ACTGC	1																																																																											1
ACTTC	1																																																																											1
ACTTT	1																																																																											1
AGAAA	4																																																																											4
AGAAC		1																																																																										1
AGAAG	1																																																																											1
AGAAT		1																																																																										1
AGACA	1	1																																																																										2
AGATG	1																																																																											1
AGATT	2																																																																											2
AGCTA	1																																																																											1
AGGCG		1																																																																										1
AGGCT	1																																																																											1
AGGGC	1																																																																											1
AGGGG	1																																																																											1
AGGTA	1																																																																											1
AGGTT	3	1	2									2	1																																																															9
AGTAG	1																																																																											1
AGTCA	1																																																																											1
AGTCT		1																																																																										1
AGTGA	1																																																																											1
AGTTA	1																																																																											1
AGTTG	1																																																																											1
ATAAA	16																																																																											16
ATAAC	1																																																																											1
ATAAG	6																																																																											6
ATAAT	3																																																																											3
ATACA	2	1																																																																										3
ATACC	1																																																																											1
ATACG	1																																																																											1
ATACT	3		1																																																																									4
ATAGA	3		1																																																																									4
ATAGT	1		1																																																																									2
ATATA	5																																																																											5
ATATG	1																																																																											1
ATATT	1																																																																											1
ATCAA	6																																																																											6
ATCAT	1																																																																											1
ATCTA	1																																																																											1
ATGAA	5	1	1																																																																									7
ATGAC	2																																																																											2
ATGCG	1																																																																											1
ATGCT	1																																																																											1
ATGGA	1	1																																																																										2
ATGGC	1																																																																											1
ATGTC	1																																																																											1
ATGTT	1																																																																											1
ATTAA	10	2																																																																										12
ATTAC	3																																																																											3
ATTAT	5																																																																											5
ATTCA	1																																																																											1
ATTCC	1																																																																											1
ATTCG	1	1																																																																										2
ATTCT	5	1																																																																										6
ATTGA	3																																																																											3
ATTGG	1																																																																											1
ATTGT	1																																																																											1
ATTTA	6	1	1																																																																									8
ATTTC	2	1																																																																										3
ATTTG	15	3																																																																										18
ATTTT	25																																																																											25
CAAAA	2																																																																											2
CAAAT	4																																																																											4
CAACA	1																																																																											1
CAAGA	1																																																																											1
CAATA	2																																																																											2
CAATG	2																																																																											2
CAATT	2																																																																											2
CACAA	3																																																																											3
CACAC	1																																																																											1
CACCT	1																																																																											1
CACTA	2																																																																											2
CACTT	1																																																																											1
CAGAC	2																																																																											2
CAGGT	1																																																																											1
CAGTC	1																																																																											1
CATGA	2																																																																											2
CATGT	2																																																																											2
CATTA	1																																																																											1
CATTG	1																																																																											1
CATTT	4																																																																											4
CCAAA	1																																																																											1
CCATT	1																																																																											1
CCCCT	1																																																																											1
CCCTC		1																																																																										1
CCGAA	1																																																																											1
CCGCG	1																																																																											1
CCTAA	1	3	1		3	1	1	1					1																																																															12
CCTCA	1																																																																											1
CGACG	1																																																																											1
CGATG	1																																																																											1
CGCCG	2																																																																											2
CGCGG	1																																																																											1
CGCTA	1																																																																											1
CGGCG	1																																																																											1
CGGGA	1																																																																											1
CGGTG	1																																																																											1
CGTAG	1																																																																											1
CGTCG	1																																																																											1
CGTTA	2																																																																											2
CGTTT	1																																																																											1
CTAAA	2																																																																											2
CTAAC	2	1	2						1		1		1																																																															8
CTACG	2																																																																											2
CTAGT	1																																																																											1
CTATA	1																																																																											1
CTATG	1																																																																											1
CTATT	1																																																																											1
CTCCA	1																																																																											1
CTCGA	1																																																																											1
CTCTA	1																																																																											1
CTGAT	1																																																																											1
CTGTA	2																																																																											2
CTGTC	1																																																																											1
CTTAC	1																																																																											1
CTTAG	1																																																																											1
CTTGG	1		1																																																																									2
CTTTA	2																																																																											2
CTTTT	2																																																																											2
GAAAA	3																																																																											3
GAAAC	1																																																																											1
GAAAT	4																																																																											4
GAACG	1																																																																											1
GAATA	2	1																																																																										3
GAATC	1																																																																											1
GAATG	2																																																																											2
GAATT	1																																																																											1
GACAT	3																																																																											3
GACGC		1																																																																										1
GAGGA	1	1																																																																										2
GAGGG	1	1																																																																										2
GAGTG		1																																																																										1
GATAA	1																																																																											1
GATAC		1																																																																										1
GATAT	1																																																																											1
GATCA	1																																																																											1
GATCC	1																																																																											1
GATGT	1																																																																											1
GCAAC	1																																																																											1
GCAAT	1																																																																											1
GCCCC	1																																																																											1
GCGCC	1																																																																											1
GCGGT		1																																																																										1
GCTAA	1																																																																											1
GCTAT	1																																																																											1
GCTGC	1																																																																											1
GCTTT	2																																																																											2
GGAAG	1																																																																											1
GGAGT	1																																																																											1
GGGAT	1																																																																											1
GGGGA		1																																																																										1
GGTAG	1																																																																											1
GGTGC		1																																																																										1
GGTTA	2	2	3	1	1	1		2	2	3	1	1	4																																																															23
GGTTT	1																																																																											1
GTAAA	2																																																																											2
GTAAT	1																																																																											1
GTACT	1																																																																											1
GTATA	2																																																																											2
GTATG	1																																																																											1
GTATT	5																																																																											5
GTCAC	1																																																																											1
GTCAG		1																																																																										1
GTCAT	1																																																																											1
GTCTA	1																																																																											1
GTGTA	1																																																																											1
GTGTC	2																																																																											2
GTTAA		1																																																																										1
GTTAG	4	1	1				1	1		2	1		1																																																															12
GTTGA	1																																																																											1
GTTTT	3	1																																																																										4
TAAAA	21	2																																																																										23
TAAAC	3																																																																											3
TAAAT	8																																																																											8
TAACC	3			1					2	1																																																																		7
TAACG	1																																																																											1
TAACT	1																																																																											1
TAAGA	1																																																																											1
TAAGT	1																																																																											1
TAATA	5	1																																																																										6
TAATG	3																																																																											3
TAATT	7																																																																											7
TACAA	4																																																																											4
TACCT	1																																																																											1
TACGC	1																																																																											1
TACTA	1																																																																											1
TACTG	2																																																																											2
TAGAA	6	4	2																																																																									12
TAGAC	2																																																																											2
TAGAG	1																																																																											1
TAGCG	1																																																																											1
TAGGG	2																																																																											2
TAGGT	1		1											1																																																														3
TAGTA	1																																																																											1
TAGTG	2																																																																											2
TAGTT	1																																																																											1
TATAA	1																																																																											1
TATAC							1																																																																					1
TATAG	2	1																																																																										3
TATAT	4																																																																											4
TATCC	1																																																																											1
TATCG	1																																																																											1
TATGA	4																																																																											4
TATGG	1																																																																											1
TATTA	5																																																																											5
TATTC	2	1	2																																																																									5
TATTG	1																																																																											1
TATTT	14	2																																																																										16
TCAAA	8																																																																											8
TCAAT	1	1																																																																										2
TCACA	1																																																																											1
TCAGC		1																																																																										1
TCATC	1																																																																											1
TCATG	1																																																																											1
TCATT	1																																																																											1
TCCAG	1																																																																											1
TCCAT	1																																																																											1
TCCGA	1																																																																											1
TCGCA	1																																																																											1
TCGTA	1																																																																											1
TCGTG	1																																																																											1
TCGTT	1																																																																											1
TCTAA	1																																																																											1
TCTAG			1																																																																									1
TCTAT	1	1																																																																										2
TCTCT	1																																																																											1
TCTTG	1																																																																											1
TGAAA	10	6		1																																																																								17
TGAAT	1	1																																																																										2
TGACG	1																																																																											1
TGAGG	1																																																																											1
TGAGT	1																																																																											1
TGATA	1																																																																											1
TGATG	1																																																																											1
TGATT	2																																																																											2
TGCAA	1																																																																											1
TGCCT	1																																																																											1
TGCGT	1																																																																											1
TGGAG	1																																																																											1
TGGCA	1																																																																											1
TGGGA	1																																																																											1
TGGTA	1																																																																											1
TGGTG	1																																																																											1
TGTAA	3	1																																																																										4
TGTAC	2																																																																											2
TGTAG	1																																																																											1
TGTAT	3																																																																											3
TGTCA	2																																																																											2
TGTCT	1																																																																											1
TGTGT	1																																																																											1
TGTTA	3																																																																											3
TGTTT	3																																																																											3
TTAAA	10																																																																											10
TTAAG		1																																																																										1
TTAAT	8																																																																											8
TTACA	3	1																																																																										4
TTACG	1	1																																																																										2
TTACT	1																																																																											1
TTAGC	1																																																																											1
TTAGG				1			1	1			1		2																																																															6
TTAGT	2																																																																											2
TTATA	7																																																																											7
TTATC	1																																																																											1
TTATG	1																																																																											1
TTATT	13	3		1																																																																								17
TTCAA	8		1						1																																																																			10
TTCAT	1																																																																											1
TTCTA	14	3	2		1																																																																							20
TTCTG	2																																																																											2
TTCTT	1																																																																											1
TTGAA	2																																																																											2
TTGAT	4	1																																																																										5
TTGCC	1																																																																											1
TTGGG	1																																																																											1
TTGGT	4																																																																											4
TTGTA	11	1																																																																										12
TTGTG	2																																																																											2
TTGTT	2																																																																											2
TTTAA	11	1																																																																										12
TTTAC	1																																																																											1
TTTAG	1																																																																											1
TTTAT	29																																																																											29
TTTCA	11	8	1																																																																									20
TTTCC	1																																																																											1
TTTCG	2																																																																											2
TTTCT	1																																																																											1
TTTGA	10																																																																											10
TTTGC	3																																																																											3
TTTGG	4																																																																											4
TTTGT	4																																																																											4
TTTTA	49	1																																																																										50
TTTTC	4																																																																											4
TTTTG	7																																																																											7
AAAAAT	1																																																																											1
AAAATA	2																																																																											2
AAAATC	1																																																																											1
AAAGTC	2																																																																											2
AAATCA	1																																																																											1
AAATTT	1																																																																											1
AACATA	1																																																																											1
AACTAC	1																																																																											1
AAGCTA	1																																																																											1
AAGTCA	1																																																																											1
AATAAA	2																																																																											2
AATATA	2																																																																											2
AATCAA	1																																																																											1
AATTTA	1																																																																											1
AATTTC	1																																																																											1
ACATAG	1																																																																											1
ACCTGA	1																																																																											1
ACTTAC	1																																																																											1
AGAAAA	1																																																																											1
AGAAGT	1																																																																											1
AGGAAG	1																																																																											1
AGTCAA	2		1																																																																									3
ATAAAA	1																																																																											1
ATACTT	1																																																																											1
ATAGAT	1																																																																											1
ATATTT	1																																																																											1
ATTAAA	1																																																																											1
ATTCAT	1																																																																											1
ATTCTG	1																																																																											1
ATTGCA	1																																																																											1
ATTTCT	1																																																																											1
ATTTGA	1																																																																											1
ATTTTG	1																																																																											1
ATTTTT	4																																																																											4
CAAATT	1																																																																											1
CAACAG	1																																																																											1
CACTCG	1																																																																											1
CAGGCA	1																																																																											1
CATACT	1																																																																											1
CCAGCT	1																																																																											1
CCATTG	1																																																																											1
CCATTT	1																																																																											1
CCCAGA	1																																																																											1
CCGCGA	1																																																																											1
CCTTGC	1																																																																											1
CGACAC	1																																																																											1
CGGATA	1																																																																											1
CGTAGA	1																																																																											1
CTCTGA		1																																																																										1
CTGATT	2																																																																											2
CTGTAA	1																																																																											1
CTGTCA	1																																																																											1
CTGTCT	1																																																																											1
CTGTTG	1																																																																											1
CTTAGC	1																																																																											1
CTTTGA	1																																																																											1
GAATTT	1																																																																											1
GAGGGA			1																																																																									1
GAGTAA	1																																																																											1
GATTTT	1																																																																											1
GCCATT	1																																																																											1
GCGCGT	1																																																																											1
GCTGTC	1																																																																											1
GCTTGC	1																																																																											1
GGATGA	1																																																																											1
GGCGGA	1																																																																											1
GGCTTC	1																																																																											1
GGGAGC	1																																																																											1
GGTTTA	1																																																																											1
GTAAAT	1																																																																											1
GTAATC	1																																																																											1
GTCAAA	4																																																																											4
GTCAAT	1																																																																											1
GTCATC	1																																																																											1
GTGTAT	1																																																																											1
GTGTGC	1																																																																											1
GTTCTA	1																																																																											1
GTTTTT	1																																																																											1
TAAAAA	1																																																																											1
TAACAT	1																																																																											1
TAATGA	1																																																																											1
TACATA	2																																																																											2
TACGAG	1																																																																											1
TAGGCA	1																																																																											1
TATTTG	1																																																																											1
TATTTT	2																																																																											2
TCAAAG	1																																																																											1
TCGACA	1																																																																											1
TGAGAT	1																																																																											1
TGATAA	1																																																																											1
TGATTT	1																																																																											1
TGCGAA	1																																																																											1
TGCGTG		1																																																																										1
TGTAGT	2																																																																											2
TGTCAA	1																																																																											1
TGTTTA	1																																																																											1
TTAAAA	2																																																																											2
TTAAAT	1																																																																											1
TTACAC	1																																																																											1
TTATAT	1																																																																											1
TTATTG	3																																																																											3
TTCAAC	1																																																																											1
TTCTTA	1																																																																											1
TTCTTT	1																																																																											1
TTGACT	1																																																																											1
TTGCAT	1																																																																											1
TTTACT	2																																																																											2
TTTATT	1																																																																											1
TTTCAT	1																																																																											1
TTTCTC	1																																																																											1
TTTGAC	2																																																																											2
TTTGTC	1																																																																											1
TTTTAA	1																																																																											1
TTTTAT	2																																																																											2
TTTTCA	1																																																																											1
TTTTGA		1																																																																										1
TTTTGT	1																																																																											1
TTTTTA	2																																																																											2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	27	18	9	12	7	7	8	9	7	6	4	3	7	3	1	4	4	3	2	1	2		1	3		2	1	2			1	2		1			1		2	4				1	1	1	1		1					1	1	1	3	2	177
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	17	17	14	7	11	4	7	8	7	6	6	6	7	6	5	3	3	2	5	2		2	3	3		2	2	2	1			2	1		1		1																						163
AC/GT	-	-	-	103	54	31	19	15	12	4	3	5	5	2	2	2	1	6	6	2	3	1	3	4	1			3		1	2	1	2	2	4	8	1																																							308
AG/CT	-	-	-	81	54	25	13	11	6	5	3		2		1	1	2			1																																																								205
AT/AT	-	-	-	123	69	38	23	13	10	2	6	2	7	2		1		3																																																										299
CG/CG	-	-	-	12	1																																																																							13
AAC/GTT	-	-	13	11	2				1																																																																			27
AAG/CTT	-	-	17	3	1	2		1																																																																				24
AAT/ATT	-	-	231	50	9	2	4	1																																																																				297
ACC/GGT	-	-	5	1	2																																																																							8
ACG/CGT	-	-	2		1																																																																							3
ACT/AGT	-	-	18	2	1	1	1						1																																																															24
AGC/CTG	-	-	3	3																																																																								6
AGG/CCT	-	-	7																																																																									7
ATC/ATG	-	-	60	20	9		2	1																																																																				92
CCG/CGG	-	-	7	1	2			1																																																																				11
AAAC/GTTT	-	14	1																																																																									15
AAAG/CTTT	-	55	21	8	7	2			1																																																																			94
AAAT/ATTT	-	338	83	18	4	2							2																																																															447
AACC/GGTT	-	2																																																																										2
AACG/CGTT	-	2																																																																										2
AACT/AGTT	-	9	1	2																																																																								12
AAGC/CTTG	-	4	1																																																																									5
AAGG/CCTT	-	2																																																																										2
AAGT/ACTT	-	9	1	1																																																																								11
AATC/ATTG	-	17		1																																																																								18
AATG/ATTC	-	13	5	1			1				1	1																																																																22
AATT/AATT	-	12																																																																										12
ACAG/CTGT	-	41	6															1																																																										48
ACAT/ATGT	-	59	5	1	1	1		1		1																																																																		69
ACCG/CGGT	-	2																																																																										2
ACCT/AGGT	-	14	2						1		1																																																																	18
ACGC/CGTG	-	1	2			1		1																																																																				5
ACGG/CCGT	-	2																																																																										2
ACGT/ACGT	-	2																																																																										2
ACTC/AGTG	-	3	1	1				1																																																																				6
ACTG/AGTC	-	1	1																																																																									2
AGAT/ATCT	-	9	4	2																																																																								15
AGCC/CTGG	-	2																																																																										2
AGCT/AGCT	-	1																																																																										1
AGGC/CCTG	-	6																																																																										6
ATCC/ATGG	-	10	3	1																																																																								14
ATGC/ATGC	-	1																																																																										1
CCCG/CGGG	-	3																																																																										3
AAAAC/GTTTT	31	1																																																																										32
AAAAG/CTTTT	19	1																																																																										20
AAAAT/ATTTT	227	10	1	1																																																																								239
AAACC/GGTTT	12							1																																																																				13
AAACG/CGTTT	6																																																																											6
AAACT/AGTTT	9		1																																																																									10
AAAGC/CTTTG	6																																																																											6
AAAGG/CCTTT	5																																																																											5
AAAGT/ACTTT	13																																																																											13
AAATC/ATTTG	62	5																																																																										67
AAATG/ATTTC	51	17	2	2																																																																								72
AAATT/AATTT	91	5	1																																																																									97
AACAC/GTGTT	11																																																																											11
AACAG/CTGTT	3	1																																																																										4
AACAT/ATGTT	9	1																																																																										10
AACCC/GGGTT	1																																																																											1
AACCG/CGGTT	1																																																																											1
AACCT/AGGTT	18	8	11	3	4	3	4	8	5	8	5	4	10	1																																																														92
AACGC/CGTTG	3																																																																											3
AACGG/CCGTT	1																																																																											1
AACGT/ACGTT	7	1																																																																										8
AACTC/AGTTG	5																																																																											5
AACTG/AGTTC	2																																																																											2
AACTT/AAGTT	5	2																																																																										7
AAGAC/CTTGT	4	1																																																																										5
AAGAG/CTCTT	2																																																																											2
AAGAT/ATCTT	9																																																																											9
AAGCC/CTTGG	1		1																																																																									2
AAGCT/AGCTT	6																																																																											6
AAGGC/CCTTG	2																																																																											2
AAGGG/CCCTT	1																																																																											1
AAGGT/ACCTT	4	1						1																																																																				6
AAGTC/ACTTG	1																																																																											1
AAGTG/ACTTC	3	1																																																																										4
AATAC/ATTGT	32	2																																																																										34
AATAG/ATTCT	37	14	9	1	1																																																																							62
AATAT/ATATT	39	1																																																																										40
AATCC/ATTGG	2																																																																											2
AATCG/ATTCG	3	1																																																																										4
AATCT/AGATT	5																																																																											5
AATGC/ATTGC	5																																																																											5
AATGG/ATTCC	7	1																																																																										8
AATGT/ACATT	19	2																																																																										21
AATTC/AATTG	28	7	1						1																																																																			37
ACACC/GGTGT	2																																																																											2
ACACG/CGTGT	3	1																																																																										4
ACACT/AGTGT	6																																																																											6
ACAGG/CCTGT	1																																																																											1
ACAGT/ACTGT	7																																																																											7
ACATC/ATGTG	3																																																																											3
ACATG/ATGTC	15																																																																											15
ACCAG/CTGGT	2																																																																											2
ACCAT/ATGGT	4																																																																											4
ACCCT/AGGGT	3																																																																											3
ACCGC/CGGTG	1	2																																																																										3
ACCTC/AGGTG	3	1																																																																										4
ACCTG/AGGTC	1	1																																																																										2
ACGAT/ATCGT	4	1																																																																										5
ACGCG/CGCGT	2	1																																																																										3
ACGCT/AGCGT	6																																																																											6
ACGGG/CCCGT	1																																																																											1
ACGTC/ACGTG	3																																																																											3
ACTAG/AGTCT	4	1	1																																																																									6
ACTAT/AGTAT	13	1	2				1																																																																					17
ACTCC/AGTGG	3	2																																																																										5
ACTCG/AGTCG	1																																																																											1
ACTCT/AGAGT	3																																																																											3
ACTGC/AGTGC	1																																																																											1
ACTGG/AGTCC	2																																																																											2
AGAGG/CCTCT	1	1																																																																										2
AGATC/ATCTG	2																																																																											2
AGATG/ATCTC	2																																																																											2
AGCAT/ATGCT	3																																																																											3
AGCCT/AGGCT	1																																																																											1
AGCGC/CGCTG	1																																																																											1
AGCTC/AGCTG		1																																																																										1
AGGAT/ATCCT	1																																																																											1
AGGCG/CCTCG		1																																																																										1
AGGGC/CCCTG	1																																																																											1
AGGGG/CCCCT	3	3																																																																										6
ATATC/ATATG	8																																																																											8
ATCCC/ATGGG	2																																																																											2
ATCCG/ATCGG	2																																																																											2
ATCGC/ATGCG	3																																																																											3
ATGCC/ATGGC	2																																																																											2
CCCCG/CGGGG	1																																																																											1
CCGCG/CGCGG	6																																																																											6
AAAAAC/GTTTTT	2																																																																											2
AAAAAG/CTTTTT	2																																																																											2
AAAAAT/ATTTTT	18																																																																											18
AAAAGT/ACTTTT	2																																																																											2
AAAATC/ATTTTG	6	1																																																																										7
AAAATG/ATTTTC	2																																																																											2
AAAATT/AATTTT	4																																																																											4
AAACAT/ATGTTT	2																																																																											2
AAACCT/AGGTTT	1																																																																											1
AAAGAC/CTTTGT	1																																																																											1
AAAGAG/CTCTTT	1																																																																											1
AAAGCT/AGCTTT	1																																																																											1
AAAGTC/ACTTTG	14		1																																																																									15
AAATAC/ATTTGT	1																																																																											1
AAATAG/ATTTCT	1																																																																											1
AAATAT/ATATTT	4																																																																											4
AAATGC/ATTTGC	1																																																																											1
AAATGG/ATTTCC	1																																																																											1
AAATGT/ACATTT	1																																																																											1
AAATTC/AATTTG	3																																																																											3
AAATTG/AATTTC	1																																																																											1
AAATTT/AAATTT	3																																																																											3
AACAAT/ATTGTT	3																																																																											3
AACAGC/CTGTTG	2																																																																											2
AACATT/AATGTT	1																																																																											1
AACCTG/AGGTTC	1																																																																											1
AACTAC/AGTTGT	3																																																																											3
AACTAG/AGTTCT	1																																																																											1
AACTGT/ACAGTT	1																																																																											1
AACTTC/AAGTTG	1																																																																											1
AAGAAT/ATTCTT	1																																																																											1
AAGAGG/CCTCTT	1																																																																											1
AAGAGT/ACTCTT	1																																																																											1
AAGCCG/CGGCTT	1																																																																											1
AAGCGC/CGCTTG	1																																																																											1
AAGGCT/AGCCTT	1																																																																											1
AAGGGC/CCCTTG	1																																																																											1
AAGTAG/ACTTCT	1																																																																											1
AAGTAT/ACTTAT	1																																																																											1
AAGTGT/ACACTT	2																																																																											2
AATATG/ATATTC	1																																																																											1
AATCAG/ATTCTG	3																																																																											3
AATCGT/ACGATT	1																																																																											1
AATCTC/AGATTG	1																																																																											1
AATGAT/ATCATT	2																																																																											2
AATGCG/ATTCGC	1																																																																											1
AATGGC/ATTGCC	2																																																																											2
AATGTC/ACATTG	2																																																																											2
AATTGC/AATTGC	1																																																																											1
ACACAT/ATGTGT	1																																																																											1
ACACCG/CGGTGT	1																																																																											1
ACACGC/CGTGTG	1	1																																																																										2
ACAGAG/CTCTGT	1																																																																											1
ACAGCG/CGCTGT	1																																																																											1
ACAGGC/CCTGTG	1																																																																											1
ACAGTG/ACTGTC	1																																																																											1
ACATAG/ATGTCT	1																																																																											1
ACATAT/ATATGT	2																																																																											2
ACATCG/ATGTCG	1																																																																											1
ACCCAG/CTGGGT	1																																																																											1
ACCGCG/CGCGGT	1																																																																											1
ACGAGT/ACTCGT	1																																																																											1
ACGATG/ATCGTC	1																																																																											1
ACGCGC/CGCGTG	1																																																																											1
ACGGAT/ATCCGT	1																																																																											1
ACGTAG/ACGTCT	1																																																																											1
ACTCAT/AGTATG	1																																																																											1
ACTCGC/AGTGCG	1																																																																											1
ACTCTG/AGAGTC		1																																																																										1
AGAGGG/CCCTCT			1																																																																									1
AGATAT/ATATCT	1																																																																											1
AGCGGG/CCCGCT	1																																																																											1
AGCTCC/AGCTGG	1																																																																											1
AGGATG/ATCCTC	1																																																																											1
AGGCAT/ATGCCT	1																																																																											1
AGGCGG/CCGCCT	1																																																																											1
