Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_018230745.1/fasta/hub_GCA_018230745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              159782
Total size of examined sequences (bp):           50011288
Total number of identified SSRs:                 7134
Number of SSR containing sequences:              6501
Number of sequences containing more than 1 SSR:  491
Number of SSRs present in compound formation:    477


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	471
2	1745
3	818
4	1607
5	2241
6	252

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	12	10	7	4	4	5	3	5	2	2				3		1	2							1	1			1					1											1							1	1			1				76
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	9	7	14	11	9	11	13	9	6	4	4	5	6	3	3	4	3	3	2	6		1	1	1		2	1		1		1	1		1		1									1															144
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	5	11	6	8	7	12	8	7	4	5	5	6	5	4	4	2	2	4	1	3	2	1	1	1	2	1	1	1		3	1																												129
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	12	6	9	5	4	6	7	10	4	6	5	1	4		3	1		2	2		1	2	2				1	1		2	1	1	1	1		1				1	2	1			1	1				1		1			2	5	3	2	1	122
AC	-	-	-	60	29	17	10	10	7	5	2	6	2	2	1				1	1	1	1	1					1																	1																																158
AG	-	-	-	65	30	19	10	8	2	2	1	2			1						1																																																								141
AT	-	-	-	151	67	37	27	19	10	6	3	10	1																																																																331
CA	-	-	-	35	17	15	10	10	7	6	5	2	3	2	2	2	1	2	1		2		1				1					1				1																																									126
CG	-	-	-	3	1			2																																																																					6
CT	-	-	-	34	14	12	4	3	1	2	1	1																																																																	72
GA	-	-	-	26	11	9	2	2		2		3	1	1							1																																																								58
GC	-	-	-	7		1																																																																							8
GT	-	-	-	39	18	14	11	15	5	6	3	1	4	4	3	1		1			2			1																																																					128
TA	-	-	-	171	71	39	24	13	11	5	9	3		1	2		2																																																												351
TC	-	-	-	60	32	30	12	6	3	1		1	1	1	1		1																																																												149
TG	-	-	-	66	43	20	21	10	11	2	5	7	4	4	2	1		1	2	5		2	2	2		1	1					1		1		3																																									217
AAC	-	-	5																																																																										5
AAG	-	-	9	2	1																																																																								12
AAT	-	-	70	18	5	1	1																																																																						95
ACA	-	-	3	1																																																																									4
ACC	-	-	3																																																																										3
ACG	-	-			1																																																																								1
AGA	-	-	1	1																																																																									2
AGC	-	-	1		1																																																																								2
AGT	-	-	4	1																																																																									5
ATA	-	-	59	11	7	4		1						1																																																															83
ATC	-	-	21	6					1																																																																				28
ATG	-	-	8	3	1			1																																																																					13
ATT	-	-	74	15	4	2	1														1																																																								97
CAA	-	-	1	1																																																																									2
CAC	-	-	2																																																																										2
CAG	-	-	1		1																																																																								2
CAT	-	-	10																																																																										10
CCA	-	-	1	1																																																																									2
CCG	-	-	2																																																																										2
CCT	-	-	2																																																																										2
CGC	-	-	1	3		1																																																																							5
CGG	-	-	1	1																																																																									2
CGT	-	-	1																																																																										1
CTA	-	-	2		1																																																																								3
CTG	-	-	1		1																																																																								2
CTT	-	-	7	3																																																																									10
GAA	-	-	8	2																																																																									10
GAC	-	-	1																																																																										1
GAG	-	-	1																																																																										1
GAT	-	-	8																																																																										8
GCA	-	-		1	1																																																																								2
GCG	-	-	1	1																																																																									2
GGC	-	-	1	2																																																																									3
GGT	-	-	2	1	1																																																																								4
GTA	-	-		1	1																																																																								2
GTG	-	-	4	1	1																																																																								6
GTT	-	-	1	1																																																																									2
TAA	-	-	52	9	6	3	1																																																																						71
TAC	-	-	5	2																																																																									7
TAG	-	-	6	1	1																																																																								8
TAT	-	-	54	10	6					1																																																																			71
TCA	-	-	14	3																																																																									17
TCC	-	-	4	1																																																																									5
TCG	-	-	2																																																																										2
TCT	-	-	5																																																																										5
TGA	-	-	24	8	1																																																																								33
TGC	-	-	3	1	1																																																																								5
TGG	-	-	2	1																																																																									3
TGT	-	-	3	4																																																																									7
TTA	-	-	91	32	4	3	3																																																																						133
TTC	-	-	8	1																																																																									9
TTG	-	-	3	3																																																																									6
AAAC	-	3																																																																											3
AAAG	-	3	2																																																																										5
AAAT	-	82	10	3	1		1	1																																																																					98
AACA	-	3																																																																											3
AAGA	-	6																																																																											6
AAGG	-		1																																																																										1
AAGT	-	2		1																																																																									3
AATA	-	97	18	5	1	2	1			1																																																																			125
AATC	-	1		1																																																																									2
AATG	-	7	3																																																																										10
AATT	-	13	1																																																																										14
ACAA	-	3	1																																																																										4
ACAG	-	12	3		1																																																																								16
ACAT	-	17	4	1		1	1																																																																						24
ACCA	-	2																																																																											2
ACCT	-	5	1																																																																										6
ACGC	-		1																																																																										1
ACTC	-	2	1									1																																																																	4
ACTT	-	2																																																																											2
AGAA	-	8	3	1					1																																																																				13
AGAC	-	2																																																																											2
AGAT	-	3	1																																																																										4
AGGA	-	2																																																																											2
AGGG	-	1																																																																											1
AGGT	-	4																																																																											4
AGTA	-	2																																																																											2
AGTC	-	3																																																																											3
AGTG	-	3						1																																																																					4
AGTT	-		1																																																																										1
ATAA	-	60	18	2																																																																									80
ATAC	-	14	2	1	1																																																																								18
ATAG	-	1		1																																																																									2
ATCA	-	5		1																																																																									6
ATCC	-	8	1		1			1																																																																					11
ATCT	-	5																																																																											5
ATGG	-	4	1		1									1			1																																																												8
ATGT	-	14	4			1	1					1					1																																																												22
ATTA	-	9	1																																																																										10
ATTC	-	7	3	1	1																																																																								12
ATTG	-	5																																																																											5
ATTT	-	57	14	5																																																																									76
CAAA	-	3	1																																																																										4
CAAG	-	1																																																																											1
CAAT	-	2																																																																											2
CACG	-	1				1																																																																							2
CACT	-	1																																																																											1
CAGA	-	1																																																																											1
CAGG	-	1																																																																											1
CATA	-	10	1	1	1		1	1																																																																					15
CATC	-	10	5	2							1																																																																		18
CATG	-	2																																																																											2
CATT	-	5	1																																																																										6
CCAT	-	3		1									1		1																																																														6
CCGC	-	1																																																																											1
CCTA	-	1																																																																											1
CCTT	-	1																																																																											1
CGCT	-	1																																																																											1
CGTG	-	1	1	2																																																																									4
CGTT	-	1																																																																											1
CTAC	-	2				1																																																																							3
CTAT	-				1																																																																								1
CTCG	-	1																																																																											1
CTGA	-	2																																																																											2
CTGC	-	2																																																																											2
CTGT	-	2	1																																																																										3
CTTA	-	5																																																																											5
CTTC	-	1																																																																											1
CTTG	-		1																																																																										1
CTTT	-	1	1		1	1																																																																							4
GAAA	-	9	3		1																																																																								13
GAAC	-	1																																																																											1
GAAT	-	2	1	1																																																																									4
GACA	-	3	3																																																																										6
GAGT	-	1																																																																											1
GATA	-	3	1																																																																										4
GATG	-	11	10	1	1					2																																																																			25
GATT	-	4	1																																																																										5
GCAG	-	1																																																																											1
GCCA	-	1																																																																											1
GCGG	-	1																																																																											1
GCGT	-	2				1																																																																							3
GCTA	-	2																																																																											2
GCTT	-	1																																																																											1
GGAC	-	1																																																																											1
GGAT	-	7					1					1																																																																	9
GGCG	-	1																																																																											1
GGTA	-	1																																																																											1
GTAA	-	3																																																																											3
GTAC	-	2																																																																											2
GTAG	-	4																																																																											4
GTAT	-	10							1																																																																				11
GTCA	-		1																																																																										1
GTCC	-	1																																																																											1
GTCT	-	8	1	1																																																																									10
GTGC	-	1	3	1	1																																																																								6
GTTA	-	1																																																																											1
GTTT	-	3																																																																											3
TAAA	-	87	18	5	1	1																																																																							112
TAAT	-	4	1																																																																										5
TACA	-	15	7	1		1										1																																																													25
TACC	-	1	1						1																																																																				3
TACG	-	2																																																																											2
TACT	-	4																																																																											4
TAGA	-	5	1	1																																																																									7
TAGG	-	5																																																																											5
TAGT	-	1	1																																																																										2
TATC	-	6	4																																																																										10
TATG	-	25	5		2		1	1																																																																					34
TATT	-	122	25	5																																																																									152
TCAA	-	4	2																																																																										6
TCAC	-	1	1																																																																										2
TCAG	-	3	1																																																																										4
TCAT	-	4									1																																																																		5
TCCA	-	11	2								1				1		1																																																												16
TCCG	-	1																																																																											1
TCTA	-	2				1																																																																							3
TCTG	-	2	2			1																																																																							5
TCTT	-	4	1																																																																										5
TGAA	-	3																																																																											3
TGAG	-			2																																																																									2
TGAT	-	1																																																																											1
TGCA	-	2																																																																											2
TGCC	-	1																																																																											1
TGCG	-	1																																																																											1
TGCT	-	1																																																																											1
TGGA	-	1	3	2			1		1								1																																																												9
TGTA	-	12	4		1	1																																																																							18
TGTC	-	14	2			1																																																																							17
TGTT	-	8																																																																											8
TTAA	-	4																																																																											4
TTAC	-	2	1																																																																										3
TTAG	-		1																																																																										1
TTAT	-	72	12	1																																																																									85
TTCA	-	11	2	1					1																																																																				15
TTCC	-	2																																																																											2
TTCG	-	1																																																																											1
TTCT	-	3	1	1																																																																									5
TTGA	-	3																																																																											3
TTGC	-	2																																																																											2
TTGT	-	2	1																																																																										3
TTTA	-	113	25	6		2																																																																							146
TTTC	-	14	6	3	2																																																																								25
TTTG	-	8																																																																											8
AAAAC	10																																																																												10
AAAAG	22	2																																																																											24
AAAAT	53	1																																																																											54
AAACA	3																																																																												3
AAACT	1																																																																												1
AAAGA	23	8	3																																																																										34
AAAGG	1																																																																												1
AAAGT	4																																																																												4
AAATA	44	2																																																																											46
AAATC	10	1	1																																																																										12
AAATG	11																																																																												11
AAATT	42																																																																												42
AACAA	11																																																																												11
AACAC	2																																																																												2
AACAG	4																																																																												4
AACAT	2																																																																												2
AACCA	2																																																																												2
AACCG	1																																																																												1
AACCT	2						3																																																																						5
AACGA	1																																																																												1
AACGT	1		1																																																																										2
AACTA	3																																																																												3
AACTC	1																																																																												1
AACTG	2	1																																																																											3
AACTT	1																																																																												1
AAGAA	20	11		1																																																																									32
AAGAG	1																																																																												1
AAGCA	1	1																																																																											2
AAGCG	1																																																																												1
AAGGT	1																																																																												1
AAGTA	1																																																																												1
AAGTC	1																																																																												1
AAGTG	1																																																																												1
AATAA	34																																																																												34
AATAC	4	1																																																																											5
AATAG	6	1																																																																											7
AATAT	13	1																																																																											14
AATCA	5																																																																												5
AATCT	2																																																																												2
AATGA	9					1																																																																							10
AATGG	2		1																																																																										3
AATGT	2																																																																												2
AATTA	16	2																																																																											18
AATTC	9	1																																																																											10
AATTG	6		1																																																																										7
AATTT	17	3																																																																											20
ACAAA	6																																																																												6
ACAAC	2																																																																												2
ACAAG	1																																																																												1
ACAAT	4																																																																												4
ACACA	7																																																																												7
ACACT	2																																																																												2
ACAGA	1																																																																												1
ACAGC	1																																																																												1
ACAGG	1																																																																												1
ACAGT	4																																																																												4
ACATA	1																																																																												1
ACATG	3																																																																												3
ACATT	3																																																																												3
ACCAA	1																																																																												1
ACCAT	2																																																																												2
ACCCA	1																																																																												1
ACCGT	1																																																																												1
ACCTA	3			1	2		2	1		1	1		1																																																																12
ACCTG	1																																																																												1
ACCTT	2																																																																												2
ACGAC	1																																																																												1
ACGAG	1																																																																												1
ACGCA	1																																																																												1
ACGGA	2																																																																												2
ACGTA	1																																																																												1
ACGTC	1	1																																																																											2
ACGTT	1																																																																												1
ACTAA	1																																																																												1
ACTAC	1																																																																												1
ACTAG	1				1																																																																								2
ACTAT	2																																																																												2
ACTGA	1	1																																																																											2
ACTGT		1																																																																											1
ACTTA	2	1																																																																											3
ACTTC	2																																																																												2
AGAAA	14	2	1																																																																										17
AGAAC	1																																																																												1
AGAAG	1																																																																												1
AGAAT	2																																																																												2
AGACG	1																																																																												1
AGAGA	2		1																																																																										3
AGAGT	4																																																																												4
AGATA	1																																																																												1
AGATC		1																																																																											1
AGATT	2																																																																												2
AGCAA	1																																																																												1
AGCAG	1																																																																												1
AGCCA	1																																																																												1
AGCGG			1																																																																										1
AGCGT	1																																																																												1
AGCTA	1																																																																												1
AGGAA	1																																																																												1
AGGAG	1																																																																												1
AGGCA	1																																																																												1
AGGGG	1																																																																												1
AGGTA	1																																																																												1
AGGTT	6	2	6	1	1	1		1	1		1	1																																																																	21
AGTAA	3	1																																																																											4
AGTAC	3																																																																												3
AGTCA	3																																																																												3
AGTCC	1																																																																												1
AGTCT	1																																																																												1
AGTGA	2																																																																												2
AGTGC	1																																																																												1
AGTGT	1	1																																																																											2
AGTTC	2	1																																																																											3
AGTTT	4																																																																												4
ATAAA	26	2	1																																																																										29
ATAAC	2	1																																																																											3
ATAAG	1																																																																												1
ATAAT	14	1																																																																											15
ATACA	4																																																																												4
ATAGA	4		2																																																																										6
ATAGC	1																																																																												1
ATAGT	1	1																																																																											2
ATATA	13																																																																												13
ATATC	2																																																																												2
ATATG	1																																																																												1
ATATT	10		1																																																																										11
ATCAA	1																																																																												1
ATCAC	1																																																																												1
ATCCT	1																																																																												1
ATCGA	1		1																																																																										2
ATCTA	1																																																																												1
ATCTC	1																																																																												1
ATCTG	1																																																																												1
ATGAA	12	1																																																																											13
ATGAG	2																																																																												2
ATGAT	1																																																																												1
ATGCT	1																																																																												1
ATGGA	1																																																																												1
ATGGT	1																																																																												1
ATGTA	3																																																																												3
ATGTC	1																																																																												1
ATTAA	12																																																																												12
ATTAC	2																																																																												2
ATTAG			1																																																																										1
ATTAT	7	1																																																																											8
ATTCA	6	1																																																																											7
ATTCC	4		1					1			1																																																																		7
ATTCT	2																																																																												2
ATTGA	4	1																																																																											5
ATTGC	2																																																																												2
ATTGG	2																																																																												2
ATTGT	5																																																																												5
ATTTA	13	1																																																																											14
ATTTC	28	3																																																																											31
ATTTG	6	2																																																																											8
ATTTT	42	3																																																																											45
CAAAA	6																																																																												6
CAAAC	3																																																																												3
CAAAG	1																																																																												1
CAAAT	2	1																																																																											3
CAACC	1																																																																												1
CAACG		2																																																																											2
CAAGC	1																																																																												1
CAATA	2																																																																												2
CAATC	1																																																																												1
CAATG	2																																																																												2
CAATT	4																																																																												4
CACAA	2																																																																												2
CACAG	1																																																																												1
CACAT	1																																																																												1
CACCG	2		1																																																																										3
CACGT	1																																																																												1
CACTA	1																																																																												1
CACTG	1																																																																												1
CACTT		1																																																																											1
CAGAA	2																																																																												2
CAGAG	1																																																																												1
CAGGA		1																																																																											1
CAGTA	2																																																																												2
CATAA	2																																																																												2
CATAG	2																																																																												2
CATCG	2																																																																												2
CATGA	2																																																																												2
CATGC	1																																																																												1
CATTA	3	1																																																																											4
CATTC	1	2	2																																																																										5
CATTT	9																																																																												9
CCAAA	1																																																																												1
CCAAC	1																																																																												1
CCACG	1																																																																												1
CCATC	2																																																																												2
CCATG	1																																																																												1
CCATT	1																																																																												1
CCCAT	1																																																																												1
CCCCT	1																																																																												1
CCTAA	1			1	1			1	3	2		1	1																																																																11
CCTAG	1																																																																												1
CCTCA	1																																																																												1
CCTCC	1																																																																												1
CCTCT	2																																																																												2
CGAAG	1																																																																												1
CGATA	2																																																																												2
CGATG	1																																																																												1
CGCAC	1																																																																												1
CGCCG	1																																																																												1
CGCGC	1																																																																												1
CGGAA	1																																																																												1
CGGAG	1																																																																												1
CGGAT	1																																																																												1
CGGCG	1																																																																												1
CGGTT	1																																																																												1
CGTGG	1																																																																												1
CGTTA	1																																																																												1
CGTTC	1																																																																												1
CTAAA	2																																																																												2
CTAAC	11	3	1			1	1						4																																																																21
CTACT	1																																																																												1
CTAGA	1																																																																												1
CTAGT	2																																																																												2
CTATG	1																																																																												1
CTATT	1																																																																												1
CTCAA	1	1																																																																											2
CTCAT	1																																																																												1
CTCCT	2																																																																												2
CTCGC	1																																																																												1
CTCTC	1																																																																												1
CTCTT	1																																																																												1
CTGAA		1																																																																											1
CTGAG	1																																																																												1
CTGAT	2																																																																												2
CTGGA	1																																																																												1
CTGTA	2																																																																												2
CTGTT	2																																																																												2
CTTAA	1																																																																												1
CTTAC	2																																																																												2
CTTAG	1																																																																												1
CTTCG	1																																																																												1
CTTGA	2																																																																												2
CTTGC	1																																																																												1
CTTGT	3																																																																												3
CTTTA	2																																																																												2
CTTTC	1																																																																												1
CTTTG	2																																																																												2
CTTTT	9	1																																																																											10
GAAAA	16	5	1		1																																																																								23
GAAAC	2																																																																												2
GAAAT	10	3																																																																											13
GAATA	3	1																																																																											4
GAATC	1	1																																																																											2
GAATG	1																																																																												1
GAATT	1	1	1																																																																										3
GACAC	2																																																																												2
GACAT	2																																																																												2
GACGA	1																																																																												1
GACTA	1																																																																												1
GAGAA	1																																																																												1
GAGAT	1																																																																												1
GAGCA	1																																																																												1
GAGGA	2																																																																												2
GAGGG	1																																																																												1
GAGTG	1																																																																												1
GATAC	1																																																																												1
GATAT	1																																																																												1
GATCA	1																																																																												1
GATGA	1																																																																												1
GATTA	1																																																																												1
GATTG	1																																																																												1
GATTT	3																																																																												3
GCAAG	1																																																																												1
GCAAT	2																																																																												2
GCAGA	2																																																																												2
GCATA	1																																																																												1
GCCGC	2																																																																												2
GCGGA	1																																																																												1
GCGGT	1																																																																												1
GCGTC	1																																																																												1
GCTAG	1	1																																																																											2
GGAAA	1																																																																												1
GGAAG			1																																																																										1
GGAAT	2		1																																																																										3
GGACA		1																																																																											1
GGAGG	1																																																																												1
GGAGT				1																																																																									1
GGATT	1																																																																												1
GGCGC	3	1																																																																											4
GGGGA	1																																																																												1
GGGTA	1																																																																												1
GGTAA	1																																																																												1
GGTTA	7	3	1		5	4	2	3	4	1	5	2	2																																																																39
GGTTT	1																																																																												1
GTAAA	1																																																																												1
GTAAC	2																																																																												2
GTAAG	1																																																																												1
GTAAT	5																																																																												5
GTACA	2	1																																																																											3
GTAGC	1																																																																												1
GTAGT	1																																																																												1
GTATA	2																																																																												2
GTATG	1																																																																												1
GTATT	1																																																																												1
GTCAA	2																																																																												2
GTCAC	2																																																																												2
GTCAT	3																																																																												3
GTCGA	1																																																																												1
GTCGT	2																																																																												2
GTCTC	1																																																																												1
GTCTG	1																																																																												1
GTCTT	1																																																																												1
GTGAC	1																																																																												1
GTGGA	2																																																																												2
GTGTC	1	1																																																																											2
GTGTG	2																																																																												2
GTTAG	7	2	2	4	4	1			4	2	1	2																																																																	29
GTTAT	1																																																																												1
GTTGA	1																																																																												1
GTTGG			1																																																																										1
GTTTA	3																																																																												3
GTTTC	1																																																																												1
GTTTT	8																																																																												8
TAAAA	41																																																																												41
TAAAC	3																																																																												3
TAAAG	1																																																																												1
TAAAT	15	1																																																																											16
TAACC	3	1	1				1		2				1																																																																9
TAACG	2																																																																												2
TAAGA	1	1	1																																																																										3
TAAGC	1																																																																												1
TAAGG	2																																																																												2
TAAGT	2																																																																												2
TAATA	10																																																																												10
TAATC	1																																																																												1
TAATT	11																																																																												11
TACAA	8																																																																												8
TACAC	2																																																																												2
TACAG	1																																																																												1
TACAT	2																																																																												2
TACCT	2																																																																												2
TACGC	1																																																																												1
TACGG	2																																																																												2
TACTA	3						1																																																																						4
TACTC	1																																																																												1
TACTG	2																																																																												2
TACTT	1																																																																												1
TAGAA	6	1												1																																																															8
TAGAC	1																																																																												1
TAGAT	2																																																																												2
TAGCC	1																																																																												1
TAGCT	1																																																																												1
TAGGA	1																																																																												1
TAGGT	6	1		1	2	1		1	1	1																																																																			14
TAGTC	1																																																																												1
TAGTG	1																																																																												1
TATAA	7																																																																												7
TATAC	6																																																																												6
TATAG	2																																																																												2
TATAT	20																																																																												20
TATCA	1																																																																												1
TATCC	1																																																																												1
TATCT	1																																																																												1
TATGA	1																																																																												1
TATGC	3																																																																												3
TATGG	1																																																																												1
TATGT	1	1																																																																											2
TATTA	17	2																																																																											19
TATTC	3																																																																												3
TATTG	10																																																																												10
TATTT	40	1																																																																											41
TCAAA	8	2	1																																																																										11
TCAAC	1																																																																												1
TCAAG	1																																																																												1
TCAAT	1																																																																												1
TCACG	1																																																																												1
TCATA	1																																																																												1
TCATC	2																																																																												2
TCATT	4																																																																												4
TCCAG	1																																																																												1
TCCAT	1																																																																												1
TCCCA		1																																																																											1
TCCGG	1																																																																												1
TCCTT	1																																																																												1
TCGAT	1																																																																												1
TCGCA	1																																																																												1
TCGTA	1																																																																												1
TCGTG	1																																																																												1
TCTAA	1																																																																												1
TCTAG	1																																																																												1
TCTAT	1																																																																												1
TCTCA	1																																																																												1
TCTCT	1																																																																												1
TCTGT	1																																																																												1
TCTTA	1																																																																												1
TCTTC	1																																																																												1
TCTTG	1																																																																												1
TCTTT	6																																																																												6
TGAAA	14	3																																																																											17
TGAAG	2																																																																												2
TGAAT	5	1																																																																											6
TGACC	1																																																																												1
TGAGA	1																																																																												1
TGAGG	1																																																																												1
TGAGT	2																																																																												2
TGATC	1																																																																												1
TGATT	4	1	2	1																																																																									8
TGCAA	2																																																																												2
TGCCA	2																																																																												2
TGCGA	1																																																																												1
TGCTT	1																																																																												1
TGGAA	1	2																																																																											3
TGGTG	1																																																																												1
TGTAA	3																																																																												3
TGTAG	2	2																																																																											4
TGTAT	1		1																																																																										2
TGTCA	4																																																																												4
TGTCC	1																																																																												1
TGTCG	1																																																																												1
TGTGA	1	1																																																																											2
TGTTA	1		1																																																																										2
TGTTC	1																																																																												1
TGTTT	8	1																																																																											9
TTAAA	16																																																																												16
TTAAC	1																																																																												1
TTAAG		1																																																																											1
TTAAT	12																																																																												12
TTACA	5																																																																												5
TTACC	1																																																																												1
TTACG	2																																																																												2
TTACT	5																																																																												5
TTAGA	1																																																																												1
TTAGG	7	1	2		1	1			2	1	1	1	1																																																																18
TTAGT	1																																																																												1
TTATA	9																																																																												9
TTATC	4	1																																																																											5
TTATG	2																																																																												2
TTATT	35	1																																																																											36
TTCAA	6	2																																																																											8
TTCAC	2																																																																												2
TTCAG	1																																																																												1
TTCAT	4	1																																																																											5
TTCCA	4		1																																																																										5
TTCCG	1																																																																												1
TTCCT	2																																																																												2
TTCGG	1																																																																												1
TTCGT	1																																																																												1
TTCTA	11	5																																																																											16
TTCTG	2																																																																												2
TTCTT	51	19	6	1	1	1															1																																																								80
TTGAA	5																																																																												5
TTGAC	1	1																																																																											2
TTGAT	2																																																																												2
TTGCC	2																																																																												2
TTGCT	2																																																																												2
TTGGA	1																																																																												1
TTGTA	10	2	1																																																																										13
TTGTC	3																																																																												3
TTGTG	11																																																																												11
TTGTT	7	1																																																																											8
TTTAA	28																																																																												28
TTTAG	1																																																																												1
TTTAT	39	1	1																																																																										41
TTTCA	19	1																																																																											20
TTTCC	1																																																																												1
TTTCG	3																																																																												3
TTTCT	11	3																																																																											14
TTTGA	9																																																																												9
TTTGC	2																																																																												2
TTTGG	3																																																																												3
TTTGT	6																																																																												6
TTTTA	78	2	1																																																																										81
TTTTC	23	6	1				1																																																																						31
TTTTG	15																																																																												15
AAAAAC	1																																																																												1
AAAAAG	1																																																																												1
AAAAAT	3																																																																												3
AAAATA	3																																																																												3
AAAATT	4																																																																												4
AAACAA	1																																																																												1
AAACGC	1																																																																												1
AAATCA	1																																																																												1
AAATGT	1																																																																												1
AAATTC	4	1																																																																											5
AAATTG	1																																																																												1
AACAGC	1																																																																												1
AACGCA	1																																																																												1
AACGTG	1																																																																												1
AACTTG	1																																																																												1
AAGAAA	1																																																																												1
AAGAGA	1																																																																												1
AAGGTA	1																																																																												1
AATAAA	2																																																																												2
AATACT	1																																																																												1
AATAGT	1																																																																												1
AATGTC	1																																																																												1
AATTAA	1																																																																												1
AATTCT	1																																																																												1
AATTTG	1																																																																												1
AATTTT	2																																																																												2
ACAACC	1																																																																												1
ACACAT	1																																																																												1
ACACTT	1																																																																												1
ACAGTT	1																																																																												1
ACCACT	1																																																																												1
ACCATT	1																																																																												1
ACCGAG	1																																																																												1
ACGAAT	1																																																																												1
ACGAGT	1																																																																												1
ACGCCC	1																																																																												1
ACGGAT	1																																																																												1
ACGTTT	1																																																																												1
ACTATT	1																																																																												1
AGAAAA	1																																																																												1
AGAATT	1																																																																												1
AGCGGC	1																																																																												1
AGCGTT	1																																																																												1
AGGTTC	1																																																																												1
AGTCAA	1																																																																												1
AGTCGT	1																																																																												1
AGTGCT	1																																																																												1
AGTTTT	1																																																																												1
ATAAAA	1																																																																												1
ATAAAT	1																																																																												1
ATAACA	1																																																																												1
ATACAG	1																																																																												1
ATACGA	1																																																																												1
ATATTT	1																																																																												1
ATCAAA	1																																																																												1
ATCAAT	1																																																																												1
ATCCAA	1																																																																												1
ATCCTG	1																																																																												1
ATCGCC	1																																																																												1
ATCTTC	1																																																																												1
ATGATA	1																																																																												1
ATGATT	4	2																																																																											6
ATGTGT	1																																																																												1
ATTAAT	1																																																																												1
ATTATA	1																																																																												1
ATTCAA	3																																																																												3
ATTCAG	1																																																																												1
ATTCAT	1																																																																												1
ATTCCG	1																																																																												1
ATTCTG	1																																																																												1
ATTGAC		1																																																																											1
ATTGAT	1																																																																												1
ATTGCA	1																																																																												1
ATTTAA	1																																																																												1
ATTTTA		1																																																																											1
ATTTTT	1																																																																												1
CAAAAC	1																																																																												1
CAAATT	1																																																																												1
CACACG	1																																																																												1
CACACT	1																																																																												1
CACTAC		1																																																																											1
CCAACA	1																																																																												1
CCACCG	1																																																																												1
CCACTT		1																																																																											1
CCATTA	1																																																																												1
CCCGCT	1																																																																												1
CCGAGA		1																																																																											1
CCTGAA	1																																																																												1
CGATAC	1																																																																												1
CGCCTC	1																																																																												1
CGCGCC	1																																																																												1
CGGGAC		2																																																																											2
CTATAG	1																																																																												1
CTGAAT	1																																																																												1
CTTAGG	1																																																																												1
CTTCTG		1																																																																											1
GAAAAA	1																																																																												1
GAAAGA	1																																																																												1
GAAATT	1																																																																												1
GAATAT	1																																																																												1
GACAAA	1																																																																												1
GACAAC	1																																																																												1
GAGCGG	3																																																																												3
GATCAA	1																																																																												1
GATTTT	1																																																																												1
GCGGGG	1																																																																												1
GCTTCG	1																																																																												1
GGCTGC	1																																																																												1
GGTAAA	1																																																																												1
GGTGCG	1																																																																												1
GGTTTT	1																																																																												1
GTAAAA	1																																																																												1
GTAAGC	1																																																																												1
GTAGTT	1																																																																												1
GTCAAA	1																																																																												1
GTCGCG	1																																																																												1
GTGAAG	1																																																																												1
GTGCGT		1																																																																											1
GTGTGA	2																																																																												2
GTGTGC		1																																																																											1
TAAAAA	1																																																																												1
TAAAAG	1																																																																												1
TAAACC		1																																																																											1
TAACTT	1																																																																												1
TAATCA	1																																																																												1
TAATTA	1																																																																												1
TACAAT		1																																																																											1
TACACA	2																																																																												2
TACCGG	1																																																																												1
TACCTA	1																																																																												1
TACGAT	1																																																																												1
TACTAA	1																																																																												1
TAGAAG	1																																																																												1
TAGATC	1																																																																												1
TAGTAA	1																																																																												1
TAGTAT	1																																																																												1
TATAAG	1																																																																												1
TATAAT	1																																																																												1
TATCAC	1																																																																												1
TATCTT	1																																																																												1
TATGGG	1																																																																												1
TATGTA	1																																																																												1
TATGTC	1																																																																												1
TATTAC	1																																																																												1
TATTTC	1																																																																												1
TCAAAA	1																																																																												1
TCAAAT	1																																																																												1
TCACGC	1																																																																												1
TCAGAA	1																																																																												1
TCCACT	1																																																																												1
TCTCGG	1																																																																												1
TCTCTT	1																																																																												1
TCTGGA	1																																																																												1
TCTGGT	1																																																																												1
TCTTTA	1																																																																												1
TGGAGG	1																																																																												1
TGGATA	1																																																																												1
TGGGTT	1																																																																												1
TGTACT	1																																																																												1
TGTATG					2																																																																								2
TGTCAG	1																																																																												1
TGTTAC	1																																																																												1
TGTTTT	1																																																																												1
TTAATT	1																																																																												1
TTACAA	1																																																																												1
TTATGT		1																																																																											1
TTATTC	1																																																																												1
TTATTT	3																																																																												3
TTCAAA	1																																																																												1
TTCAAG	1																																																																												1
TTCATA	2																																																																												2
TTCCTC	1																																																																												1
TTCTAG	1																																																																												1
TTCTAT	1																																																																												1
TTCTGA		1																																																																											1
TTCTGG	2																																																																												2
TTGAAT	6	2																																																																											8
TTGACG	1																																																																												1
TTGATA	1																																																																												1
TTGATC	1																																																																												1
TTGCAA	1																																																																												1
TTGTCA	1																																																																												1
TTTAAG	1	1																																																																											2
TTTATA	1																																																																												1
TTTATT	1																																																																												1
TTTCAT	1																																																																												1
TTTCTC	3																																																																												3
TTTGAA	1																																																																												1
TTTGAC	2																																																																												2
TTTTAA	2																																																																												2
TTTTAT	4																																																																												4
TTTTCA	3	2	1																																																																										6
TTTTCG	1																																																																												1
TTTTCT	2																																																																												2
TTTTGA	1																																																																												1
TTTTGT	1																																																																												1
TTTTTA	5																																																																												5

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	20	18	19	12	8	10	12	13	9	8	7	1	4		6	1	1	4	2		1	2	2		1	1	1	1	1	2	1	1	1	2		1				1	2	1			2	1				1		2	1		2	6	3	2	1	198
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	15	12	25	17	17	18	25	17	13	8	9	10	12	8	7	8	5	5	6	7	3	3	2	2	1	4	2	1	2		4	2		1		1									1															273
AC/GT	-	-	-	200	107	66	52	45	30	19	15	16	13	12	8	4	1	4	4	6	5	3	4	3		1	2	1				2		1		4									1																																629
AG/CT	-	-	-	185	87	70	28	19	6	7	2	7	2	2	2		1				2																																																								420
AT/AT	-	-	-	322	138	76	51	32	21	11	12	13	1	1	2		2																																																												682
CG/CG	-	-	-	10	1	1		2																																																																					14
AAC/GTT	-	-	16	10																																																																									26
AAG/CTT	-	-	38	9	1																																																																								48
AAT/ATT	-	-	400	95	32	13	6	1		1				1							1																																																								550
ACC/GGT	-	-	14	4	2																																																																								20
ACG/CGT	-	-	4		1																																																																								5
ACT/AGT	-	-	17	5	3																																																																								25
AGC/CTG	-	-	6	2	5																																																																								13
AGG/CCT	-	-	7	1																																																																									8
ATC/ATG	-	-	85	20	2			1	1																																																																				109
CCG/CGG	-	-	6	7		1																																																																							14
AAAC/GTTT	-	33	3																																																																										36
AAAG/CTTT	-	48	17	5	4	1			1																																																																				76
AAAT/ATTT	-	690	140	32	3	5	2	1		1																																																																			874
AACC/GGTT	-	2																																																																											2
AACG/CGTT	-	3																																																																											3
AACT/AGTT	-	2	3																																																																										5
AAGC/CTTG	-	5	1																																																																										6
AAGG/CCTT	-	6	1																																																																										7
AAGT/ACTT	-	20	1	1																																																																									22
AATC/ATTG	-	25	3	2																																																																									30
AATG/ATTC	-	39	10	3	1				1		1																																																																		55
AATT/AATT	-	30	3																																																																										33
ACAG/CTGT	-	44	12	1	1	2																																																																							60
ACAT/ATGT	-	117	27	4	5	4	4	2	1			1				1	1																																																												167
ACCT/AGGT	-	23	2			1			1																																																																				27
ACGC/CGTG	-	6	5	3	1	2																																																																							17
ACGG/CCGT	-	3																																																																											3
ACGT/ACGT	-	4																																																																											4
ACTC/AGTG	-	8	2	2				1				1																																																																	14
ACTG/AGTC	-	8	2																																																																										10
AGAT/ATCT	-	25	7	2	1	1																																																																							36
AGCC/CTGG	-	1																																																																											1
AGCG/CGCT	-	2																																																																											2
AGCT/AGCT	-	2																																																																											2
AGGC/CCTG	-	5																																																																											5
AGGG/CCCT	-	1																																																																											1
ATCC/ATGG	-	55	22	6	3		2	1	1	2	2	1	1	1	2		3																																																												102
ATGC/ATGC	-	4																																																																											4
CCCG/CGGG	-	3																																																																											3
AAAAC/GTTTT	80	2																																																																											82
AAAAG/CTTTT	195	57	12	2	2	1	1														1																																																								271
AAAAT/ATTTT	432	13	3																																																																										448
AAACC/GGTTT	11																																																																												11
AAACG/CGTTT	8																																																																												8
AAACT/AGTTT	19																																																																												19
AAAGC/CTTTG	10	1																																																																											11
AAAGG/CCTTT	8																																																																												8
AAAGT/ACTTT	18	1																																																																											19
AAATC/ATTTG	50	7	4	1																																																																									62
AAATG/ATTTC	120	12				1																																																																							133
AAATT/AATTT	182	7																																																																											189
AACAC/GTGTT	24																																																																												24
AACAG/CTGTT	14																																																																												14
AACAT/ATGTT	12	2	1																																																																										15
AACCC/GGGTT	3		1																																																																										4
AACCG/CGGTT	3																																																																												3
AACCT/AGGTT	53	13	13	8	16	9	9	7	17	8	9	7	10																																																																179
AACGC/CGTTG	1	2																																																																											3
AACGG/CCGTT	5																																																																												5
AACGT/ACGTT	10		1																																																																										11
AACTC/AGTTG	6	1																																																																											7
AACTG/AGTTC	6	4																																																																											10
AACTT/AAGTT	7	2																																																																											9
AAGAC/CTTGT	9																																																																												9
AAGAG/CTCTT	8		1																																																																										9
AAGAT/ATCTT	9	2	1																																																																										12
AAGCC/CTTGG	2																																																																												2
AAGCG/CGCTT	3																																																																												3
AAGCT/AGCTT	4																																																																												4
AAGGC/CCTTG	5																																																																												5
AAGGG/CCCTT			1																																																																										1
AAGGT/ACCTT	13																																																																												13
AAGTC/ACTTG	10	1																																																																											11
AAGTG/ACTTC	9	1																																																																											10
AATAC/ATTGT	49	3	2																																																																										54
AATAG/ATTCT	39	8	2											1																																																															50
AATAT/ATATT	120	5	1																																																																										126
AATCC/ATTGG	6																																																																												6
AATCG/ATTCG	3	1	1																																																																										5
AATCT/AGATT	11		1																																																																										12
AATGC/ATTGC	8																																																																												8
AATGG/ATTCC	18	4	6					1			1																																																																		30
AATGT/ACATT	28	1																																																																											29
AATTC/AATTG	47	7	2																																																																										56
ACACC/GGTGT	3																																																																												3
ACACG/CGTGT	8	1																																																																											9
ACACT/AGTGT	11	3																																																																											14
ACAGC/CTGTG	2																																																																												2
ACAGG/CCTGT	2	2																																																																											4
ACAGT/ACTGT	16	2																																																																											18
ACATC/ATGTG	3	1																																																																											4
ACATG/ATGTC	15																																																																												15
ACCAG/CTGGT	1																																																																												1
ACCAT/ATGGT	5																																																																												5
ACCCT/AGGGT	1																																																																												1
ACCGC/CGGTG	4		1																																																																										5
ACCGG/CCGGT	1																																																																												1
ACCGT/ACGGT	3																																																																												3
ACCTC/AGGTG	2																																																																												2
ACCTG/AGGTC	2																																																																												2
ACGAG/CGTCT	4																																																																												4
ACGAT/ATCGT	4																																																																												4
ACGCC/CGTGG	2																																																																												2
ACGCG/CGCGT	1																																																																												1
ACGCT/AGCGT	3																																																																												3
ACGTC/ACGTG	6	1																																																																											7
ACTAG/AGTCT	9				1																																																																								10
ACTAT/AGTAT	16	1					1																																																																						18
ACTCC/AGTGG	3			1																																																																									4
ACTCG/AGTCG	1																																																																												1
ACTCT/AGAGT	6																																																																												6
ACTGC/AGTGC	2																																																																												2
ACTGG/AGTCC	3																																																																												3
AGAGC/CTCTG	5																																																																												5
AGAGG/CCTCT	8																																																																												8
AGATC/ATCTG	5	1																																																																											6
AGATG/ATCTC	10																																																																												10
AGCAT/ATGCT	9																																																																												9
AGCCT/AGGCT	3	1																																																																											4
AGCGG/CCGCT	2		1																																																																										3
AGCTC/AGCTG	1																																																																												1
AGGAT/ATCCT	3																																																																												3
AGGCG/CCTCG	1																																																																												1
AGGGG/CCCCT	6																																																																												6
ATATC/ATATG	8																																																																												8
ATCCC/ATGGG	3	1																																																																											4
ATCCG/ATCGG	1																																																																												1
ATCGC/ATGCG	5																																																																												5
ATGCC/ATGGC	4																																																																												4
CCGCG/CGCGG	8	1																																																																											9
AAAAAC/GTTTTT	4																																																																												4
AAAAAG/CTTTTT	6																																																																												6
AAAAAT/ATTTTT	24																																																																												24
AAAACC/GGTTTT	2																																																																												2
AAAACG/CGTTTT	1																																																																												1
AAAACT/AGTTTT	1																																																																												1
AAAAGT/ACTTTT	2																																																																												2
AAAATC/ATTTTG	5																																																																												5
AAAATG/ATTTTC	4	2	1																																																																										7
AAAATT/AATTTT	10	1																																																																											11
AAACAT/ATGTTT		1																																																																											1
AAACCC/GGGTTT	1																																																																												1
AAACCT/AGGTTT		1																																																																											1
AAACGC/CGTTTG	2																																																																												2
AAACGT/ACGTTT	1																																																																												1
AAACTT/AAGTTT	1	1																																																																											2
AAAGAC/CTTTGT	1																																																																												1
AAAGAG/CTCTTT	6																																																																												6
AAAGAT/ATCTTT	2																																																																												2
AAAGGT/ACCTTT	2																																																																												2
AAAGTC/ACTTTG	4																																																																												4
AAAGTT/AACTTT	1																																																																												1
AAATAG/ATTTCT	2																																																																												2
AAATAT/ATATTT	3																																																																												3
AAATCC/ATTTGG	1																																																																												1
AAATGT/ACATTT	1																																																																												1
AAATTC/AATTTG	18	3																																																																											21
AAATTG/AATTTC	2																																																																												2
AAATTT/AAATTT	1																																																																												1
AACAAT/ATTGTT	1																																																																												1
AACACC/GGTGTT	1																																																																												1
AACAGC/CTGTTG	1																																																																												1
AACAGT/ACTGTT	1																																																																												1
AACCAC/GGTTGT	1																																																																												1
AACCAG/CTGGTT	3																																																																												3
AACCTG/AGGTTC	2																																																																												2
AACGAC/CGTTGT	1																																																																												1
AACGCT/AGCGTT	1																																																																												1
AACGTC/ACGTTG	1																																																																												1
AACGTG/ACGTTC	1																																																																												1
AACTAC/AGTTGT	1																																																																												1
AACTAG/AGTTCT	1																																																																												1
AACTGT/ACAGTT	1																																																																												1
AACTTG/AAGTTC	2																																																																												2
AAGAAT/ATTCTT	1																																																																												1
AAGAGG/CCTCTT	1																																																																												1
AAGATC/ATCTTG	2																																																																												2
AAGATG/ATCTTC	1																																																																												1
AAGCAG/CTGCTT		1																																																																											1
AAGCCG/CGGCTT	1																																																																												1
AAGCCT/AGGCTT	1																																																																												1
AAGCGT/ACGCTT	1																																																																												1
AAGGTG/ACCTTC	1																																																																												1
AAGTAC/ACTTGT	1																																																																												1
AAGTAG/ACTTCT	1																																																																												1
AAGTAT/ACTTAT	1																																																																												1
AAGTGG/ACTTCC	1	1																																																																											2
AAGTGT/ACACTT	1																																																																												1
AATACG/ATTCGT	2																																																																												2
AATACT/AGTATT	3																																																																												3
AATAGT/ACTATT	4																																																																												4
AATATC/ATATTG	3																																																																												3
AATATG/ATATTC	4																																																																												4
AATATT/AATATT	1																																																																												1
AATCAG/ATTCTG	2	1																																																																											3
AATCAT/ATGATT	5	2																																																																											7
AATCGG/ATTCCG	1																																																																												1
AATCGT/ACGATT	1																																																																												1
AATCTG/AGATTC	2																																																																												2
AATGAC/ATTGTC	1																																																																												1
AATGAT/ATCATT	1																																																																												1
AATGGT/ACCATT	2																																																																												2
AATGTC/ACATTG	1	1																																																																											2
AATTAC/AATTGT	1	1																																																																											2
AATTAG/AATTCT	2																																																																												2
AATTAT/AATTAT	3																																																																												3
AATTGC/AATTGC	2																																																																												2
ACACAT/ATGTGT	4				2																																																																								6
ACACGC/CGTGTG	1	2																																																																											3
ACACTC/AGTGTG	3																																																																												3
ACACTG/AGTGTC	1																																																																												1
ACAGAT/ATCTGT	1																																																																												1
ACATAG/ATGTCT	1																																																																												1
ACATAT/ATATGT	1																																																																												1
ACCACT/AGTGGT	1	1																																																																											2
ACCCAT/ATGGGT	1																																																																												1
ACCCGC/CGGGTG	1																																																																												1
ACCGAG/CGGTCT	2	1																																																																											3
ACCGAT/ATCGGT	1																																																																												1
ACCGCC/CGGTGG	1																																																																												1
ACCGCG/CGCGGT	1																																																																												1
ACCGGG/CCCGGT		2																																																																											2
ACCGGT/ACCGGT	1																																																																												1
ACCTAT/AGGTAT	1																																																																												1
ACCTCC/AGGTGG	1																																																																												1
ACGACT/AGTCGT	1																																																																												1
ACGAGT/ACTCGT	1																																																																												1
ACGCCC/CGTGGG	1																																																																												1
ACGCTC/AGCGTG	1																																																																												1
ACGGAT/ATCCGT	1																																																																												1
ACTAGC/AGTGCT	1																																																																												1
ACTATC/AGTGAT	1																																																																												1
AGATCC/ATCTGG	1																																																																												1
AGATCT/AGATCT	1																																																																												1
AGCCGC/CGGCTG	1																																																																												1
AGCGGC/CCGCTG	1																																																																												1
AGCGGG/CCCGCT	4																																																																												4
AGCTAT/AGCTAT	1																																																																												1
AGGATC/ATCCTG	1																																																																												1
AGGCGG/CCGCCT	1																																																																												1
ATATCC/ATATGG	1																																																																												1
ATCGCC/ATGGCG	1																																																																												1
CCCCCG/CGGGGG	1																																																																												1
CCCGCG/CGCGGG	1																																																																												1
