Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_017918225.1/fasta/hub_GCA_017918225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              67
Total size of examined sequences (bp):           34118624
Total number of identified SSRs:                 18465
Number of SSR containing sequences:              58
Number of sequences containing more than 1 SSR:  56
Number of SSRs present in compound formation:    3981


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	9
2	12877
3	1886
4	556
5	1291
6	1846

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	2	1																																																																																																																																																																	5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2																																																																																																																																																																		2
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1																																																																																																																																																																		2
AC	-	-	-	545	495	313	211	166	77	52	39	21	12	16	6	5	1	2		2		1	1		1		1																																																																																																																																																										1967
AG	-	-	-	475	187	72	15	5	4	1																																																																																																																																																																											759
AT	-	-	-	197	226	178	72	26	10	5	6	1		1		1																																																																																																																																																																					723
CA	-	-	-	655	614	389	256	187	126	69	38	29	18	11	5	5	3	8	3	1	1	4	1	3	2		2	1				1						1																																																																																																																																															2433
CG	-	-	-	82	12	4	1																																																																																																																																																																														99
CT	-	-	-	459	182	66	33	10	5	2	4		1																																																																																																																																																																								762
GA	-	-	-	335	127	54	13	5	3																																																																																																																																																																												537
GC	-	-	-	104	10	2																																																																																																																																																																															116
GT	-	-	-	591	489	356	231	170	88	63	40	25	20	16	11	3	4	6	1	3	1	1	1	3									2				1																																																																																																																																																2126
TA	-	-	-	153	115	69	29	14	3	3		2																																																																																																																																																																									388
TC	-	-	-	455	192	76	21	8	1	1	2																																																																																																																																																																										756
TG	-	-	-	658	485	352	244	146	92	71	56	21	17	15	11	9	2	5	6	1	2	4	2	3	1		2			2			1						1				1																																										1																																																																																																2211
AAC	-	-	2	1	1		1																																																																																																																																																																														5
AAG	-	-	3																																																																																																																																																																																		3
AAT	-	-	3	1		1																																																																																																																																																																															5
ACA	-	-		1	1																																																																																																																																																																																2
ACC	-	-	22	5																																																																																																																																																																																	27
ACG	-	-	7																																																																																																																																																																																		7
AGC	-	-	68	13	12	3	1																																																																																																																																																																														97
AGG	-	-	22		1	1	2																																																																																																																																																																														26
AGT	-	-	1																																																																																																																																																																																		1
ATC	-	-	1																																																																																																																																																																																		1
ATT	-	-	3																																																																																																																																																																																		3
CAA	-	-	2	1																																																																																																																																																																																	3
CAC	-	-	36	7	4	1																																																																																																																																																																															48
CAG	-	-	324	106	34	4	3																																																																																																																																																																														471
CAT	-	-		1	1																																																																																																																																																																																2
CCA	-	-	62	11	4	1																																																																																																																																																																															78
CCG	-	-	19	7							1																																																																																																																																																																										27
CCT	-	-	30	10	1	1	1																																																																																																																																																																														43
CGA	-	-	11	1																																																																																																																																																																																	12
CGC	-	-	42	4	1			1																																																																																																																																																																													48
CGG	-	-	28	3																																																																																																																																																																																	31
CGT	-	-	11	6																																																																																																																																																																																	17
CTC	-	-	22	3	2	1																																																																																																																																																																															28
CTG	-	-	66	22	3	1																																																																																																																																																																															92
CTT	-	-	1																																																																																																																																																																																		1
GAA	-	-	1																																																																																																																																																																																		1
GAC	-	-	10	2																																																																																																																																																																																	12
GAG	-	-	20	6	3	1		1																																																																																																																																																																													31
GAT	-	-	3																																																																																																																																																																																		3
GCA	-	-	91	33	7	2	2																																																																																																																																																																														135
GCC	-	-	27	2	2																																																																																																																																																																																31
GCG	-	-	44	9																																																																																																																																																																																	53
GCT	-	-	128	33	4	1	2																																																																																																																																																																														168
GGA	-	-	21	8	2																																																																																																																																																																																31
GGC	-	-	39	5	1																																																																																																																																																																																45
GGT	-	-	51	15	3	1	1																																																																																																																																																																														71
GTC	-	-	7	1	1																																																																																																																																																																																9
GTG	-	-	34	6	2	2																																																																																																																																																																															44
GTT	-	-	1			1																																																																																																																																																																															2
TAA	-	-	2																																																																																																																																																																																		2
TAT	-	-	2																																																																																																																																																																																		2
TCA	-	-	2		1																																																																																																																																																																																3
TCC	-	-	14	1		1																																																																																																																																																																															16
TCG	-	-	7																																																																																																																																																																																		7
TGA	-	-	1																																																																																																																																																																																		1
TGC	-	-	76	9	4	2	3																																																																																																																																																																														94
TGG	-	-	36	2	2	1																																																																																																																																																																															41
TGT	-	-					1																																																																																																																																																																														1
TTA	-	-	5																																																																																																																																																																																		5
AAAC	-	4	1																																																																																																																																																																																		5
AAAT	-		1																																																																																																																																																																																		1
AACA	-	1																																																																																																																																																																																			1
AATA	-	3																																																																																																																																																																																			3
ACAA	-	2	1																																																																																																																																																																																		3
ACAG	-	10	3	1	1																																																																																																																																																																																15
ACAT	-		1																																																																																																																																																																																		1
ACCA	-				1																																																																																																																																																																																1
ACCC	-	2																																																																																																																																																																																			2
ACGC	-	3	1	1																																																																																																																																																																																	5
ACTC	-	1	1																																																																																																																																																																																		2
ACTG	-	1																																																																																																																																																																																			1
AGAC	-	9	4	3																																																																																																																																																																																	16
AGCG	-	2	1																																																																																																																																																																																		3
AGGC	-	2																																																																																																																																																																																			2
AGGG	-	6	3																																																																																																																																																																																		9
AGTG	-		2	1																																																																																																																																																																																	3
ATAC	-	1	1	1																																																																																																																																																																																	3
ATGA	-	1																																																																																																																																																																																			1
ATGC	-	1	1																																																																																																																																																																																		2
ATGT	-	1																																																																																																																																																																																			1
ATTC	-	1																																																																																																																																																																																			1
ATTG	-	1																																																																																																																																																																																			1
CAAA	-	1		1																																																																																																																																																																																	2
CAAC	-	2																																																																																																																																																																																			2
CACC	-	5																																																																																																																																																																																			5
CACG	-	12	5	2																																																																																																																																																																																	19
CACT	-	5	1	1																																																																																																																																																																																	7
CAGA	-	4	2	1																																																																																																																																																																																	7
CATC	-	1																																																																																																																																																																																			1
CATG	-	2																																																																																																																																																																																			2
CCAC	-	2	1																																																																																																																																																																																		3
CCAT	-	1																																																																																																																																																																																			1
CCCA	-	10	4	1																																																																																																																																																																																	15
CCCG	-	1	1																																																																																																																																																																																		2
CCCT	-	24	5	2		1																																																																																																																																																																															32
CCGC	-	1																																																																																																																																																																																			1
CCTC	-	22	1	1																																																																																																																																																																																	24
CCTG	-	1																																																																																																																																																																																			1
CGAG	-	2																																																																																																																																																																																			2
CGCA	-	8	4	1		1																																																																																																																																																																															14
CGCC	-	3																																																																																																																																																																																			3
CGCT	-		1																																																																																																																																																																																		1
CGGG	-	1																																																																																																																																																																																			1
CGTG	-	2																																																																																																																																																																																			2
CTCA	-	9	2			1																																																																																																																																																																															12
CTCC	-	19	3	1	1																																																																																																																																																																																24
CTCG	-	4	3																																																																																																																																																																																		7
CTGC	-	1																																																																																																																																																																																			1
CTGT	-	6	2																																																																																																																																																																																		8
CTTC	-		1																																																																																																																																																																																		1
GAAG	-	1																																																																																																																																																																																			1
GACA	-	2	2																																																																																																																																																																																		4
GAGC	-	5	1																																																																																																																																																																																		6
GAGG	-	16	4																																																																																																																																																																																		20
GAGT	-	1	3						1																																																																																																																																																																												5
GATG	-	1																																																																																																																																																																																			1
GCAC	-	16	2																																																																																																																																																																																		18
GCAG	-	1																																																																																																																																																																																			1
GCCC	-	1																																																																																																																																																																																			1
GCCT	-	1																																																																																																																																																																																			1
GCGA	-	1																																																																																																																																																																																			1
GCGG	-	1																																																																																																																																																																																			1
GCGT	-	9	4																																																																																																																																																																																		13
GCTC	-	2	1																																																																																																																																																																																		3
GGAC	-	1																																																																																																																																																																																			1
GGAG	-	16	2	1																																																																																																																																																																																	19
GGCA	-	1																																																																																																																																																																																			1
GGCG	-	2	3																																																																																																																																																																																		5
GGGA	-	18	6																																																																																																																																																																																		24
GGGC	-	2		1																																																																																																																																																																																	3
GGGT	-	5	1																																																																																																																																																																																		6
GGTG	-	3																																																																																																																																																																																			3
GTCC	-	2																																																																																																																																																																																			2
GTCT	-	10	2	2																																																																																																																																																																																	14
GTGA	-	2	1	1																																																																																																																																																																																	4
GTGC	-	16	3																																																																																																																																																																																		19
GTGG	-	6	1																																																																																																																																																																																		7
GTTG	-				1																																																																																																																																																																																1
GTTT	-			1																																																																																																																																																																																	1
TAAA	-	2																																																																																																																																																																																			2
TATG	-	2																																																																																																																																																																																			2
TCAC	-	1	1																																																																																																																																																																																		2
TCAT	-	2																																																																																																																																																																																			2
TCCA	-	1																																																																																																																																																																																			1
TCCC	-	12	1																																																																																																																																																																																		13
TCGC	-	1																																																																																																																																																																																			1
TCTG	-	9	2	3	1	1																																																																																																																																																																															16
TCTT	-	1																																																																																																																																																																																			1
TGAG	-	1			1																																																																																																																																																																																2
TGCA	-	1																																																																																																																																																																																			1
TGCC	-	1																																																																																																																																																																																			1
TGCG	-	7	3	1																																																																																																																																																																																	11
TGGA	-			1																																																																																																																																																																																	1
TGGG	-	2																																																																																																																																																																																			2
TGTA	-	4	1																																																																																																																																																																																		5
TGTC	-	8	2	1	1		1																																																																																																																																																																														13
TTAT	-	1																																																																																																																																																																																			1
TTCG	-	1																																																																																																																																																																																			1
TTGT	-	2																																																																																																																																																																																			2
TTTA	-	2																																																																																																																																																																																			2
TTTG	-	5	1																																																																																																																																																																																		6
AAAAG	3																																																																																																																																																																																				3
AAACA	2																																																																																																																																																																																				2
AAAGC	2																																																																																																																																																																																				2
AAAGG	1																																																																																																																																																																																				1
AAATT	139	37	8	1	1	1																																																																																																																																																																															187
AACGG	1																																																																																																																																																																																				1
AAGAG	1																																																																																																																																																																																				1
AAGGG	3																																																																																																																																																																																				3
AAGTC	4	1	1																																																																																																																																																																																		6
AAGTT	2																																																																																																																																																																																				2
AATTA	21	6	11	18	5	2				2																																																																																																																																																																											65
AATTT	3																																																																																																																																																																																				3
ACAAA	1																																																																																																																																																																																				1
ACAGA	1																																																																																																																																																																																				1
ACCCC	3																																																																																																																																																																																				3
ACCGC	1																																																																																																																																																																																				1
ACGCC	1																																																																																																																																																																																				1
ACTGC		1																																																																																																																																																																																			1
ACTTA	1																																																																																																																																																																																				1
AGAAA	2																																																																																																																																																																																				2
AGAGA	1																																																																																																																																																																																				1
AGAGC	2																																																																																																																																																																																				2
AGAGG	9	1																																																																																																																																																																																			10
AGATG	1																																																																																																																																																																																				1
AGCAA	1	2																																																																																																																																																																																			3
AGCAC			1																																																																																																																																																																																		1
AGCCA	1																																																																																																																																																																																				1
AGCGC	1																																																																																																																																																																																				1
AGGAG	6	1																																																																																																																																																																																			7
AGGGA	3		1																																																																																																																																																																																		4
AGGGC	1																																																																																																																																																																																				1
AGGGG	15	2																																																																																																																																																																																			17
AGTCA		1																																																																																																																																																																																			1
AGTGG	1																																																																																																																																																																																				1
AGTGT	1																																																																																																																																																																																				1
ATCCC	1																																																																																																																																																																																				1
ATCTC	1																																																																																																																																																																																				1
ATGCG	1																																																																																																																																																																																				1
ATTAA	3	1	2																																																																																																																																																																																		6
ATTAT	1																																																																																																																																																																																				1
CAAAA	1																																																																																																																																																																																				1
CAAAC	1																																																																																																																																																																																				1
CAAAG	2																																																																																																																																																																																				2
CAACT	1																																																																																																																																																																																				1
CAAGT	1																																																																																																																																																																																				1
CACAA	3																																																																																																																																																																																				3
CACAC							1																																																																																																																																																																														1
CACAG	1																																																																																																																																																																																				1
CACCA	1																																																																																																																																																																																				1
CACCC	9																																																																																																																																																																																				9
CACCG	2																																																																																																																																																																																				2
CACCT	1																																																																																																																																																																																				1
CACGC	1																																																																																																																																																																																				1
CACTG		1																																																																																																																																																																																			1
CAGCA	1																																																																																																																																																																																				1
CAGCG	2																																																																																																																																																																																				2
CAGGT			1																																																																																																																																																																																		1
CATCA	1																																																																																																																																																																																				1
CCACA	1																																																																																																																																																																																				1
CCACC	7																																																																																																																																																																																				7
CCACG	1																																																																																																																																																																																				1
CCACT	5																																																																																																																																																																																				5
CCATC	1																																																																																																																																																																																				1
CCCAA		1																																																																																																																																																																																			1
CCCAC	5																																																																																																																																																																																				5
CCCAT	1																																																																																																																																																																																				1
CCCCA	15																																																																																																																																																																																				15
CCCCG	8																																																																																																																																																																																				8
CCCCT	44	8	1	1																																																																																																																																																																																	54
CCCGC			1																																																																																																																																																																																		1
CCCGT	1																																																																																																																																																																																				1
CCCTC	28	4	6	1																																																																																																																																																																																	39
CCCTT	3		1																																																																																																																																																																																		4
CCGCA		1																																																																																																																																																																																			1
CCGCC	2																																																																																																																																																																																				2
CCGCT	1																																																																																																																																																																																				1
CCTCA	3	3																																																																																																																																																																																			6
CCTCC	17		1																																																																																																																																																																																		18
CCTCT	9	3	2																																																																																																																																																																																		14
CCTGC	2																																																																																																																																																																																				2
CGACT	1																																																																																																																																																																																				1
CGAGA	1																																																																																																																																																																																				1
CGCAG	1																																																																																																																																																																																				1
CGCCC	3																																																																																																																																																																																				3
CGCGC	1																																																																																																																																																																																				1
CGCGG	1																																																																																																																																																																																				1
CGCGT	1																																																																																																																																																																																				1
CGCTC	1																																																																																																																																																																																				1
CGCTG	1																																																																																																																																																																																				1
CGGCA	2																																																																																																																																																																																				2
CGGCG	2																																																																																																																																																																																				2
CGGGG	2																																																																																																																																																																																				2
CGTGC	1																																																																																																																																																																																				1
CGTGG	2																																																																																																																																																																																				2
CGTTT		1																																																																																																																																																																																			1
CTCCA	1																																																																																																																																																																																				1
CTCCC	30	2																																																																																																																																																																																			32
CTCCG	2																																																																																																																																																																																				2
CTCCT	8	2																																																																																																																																																																																			10
CTCGC	2																																																																																																																																																																																				2
CTCGT	1																																																																																																																																																																																				1
CTCTC	13	3		2				1																				1																																																																																																																																																									20
CTCTG	1																																																																																																																																																																																				1
CTGAA	1																																																																																																																																																																																				1
CTGCA	1																																																																																																																																																																																				1
CTGCC	1																																																																																																																																																																																				1
CTGCT	1																																																																																																																																																																																				1
CTTCC	1			1																																																																																																																																																																																	2
CTTCG	1																																																																																																																																																																																				1
CTTGA	1																																																																																																																																																																																				1
CTTTC	1																																																																																																																																																																																				1
CTTTT	1																																																																																																																																																																																				1
GAAAA	1	1																																																																																																																																																																																			2
GAAGC	5																																																																																																																																																																																				5
GAAGG	2																																																																																																																																																																																				2
GACAC			1																																																																																																																																																																																		1
GACAG	1																																																																																																																																																																																				1
GACCC		1																																																																																																																																																																																			1
GACTT	1																																																																																																																																																																																				1
GAGAG	9	1																																																																																																																																																																																			10
GAGCG	1																																																																																																																																																																																				1
GAGGA	9	1																																																																																																																																																																																			10
GAGGC	1																																																																																																																																																																																				1
GAGGG	34	2																																																																																																																																																																																			36
GAGGT	2	1																																																																																																																																																																																			3
GAGTC	1																																																																																																																																																																																				1
GATGA	1																																																																																																																																																																																				1
GCAAA	2																																																																																																																																																																																				2
GCACA	2																																																																																																																																																																																				2
GCACC	1																																																																																																																																																																																				1
GCACG	1																																																																																																																																																																																				1
GCAGG	2																																																																																																																																																																																				2
GCATG	1																																																																																																																																																																																				1
GCCAC	1																																																																																																																																																																																				1
GCCTC	1																																																																																																																																																																																				1
GCGAG	2																																																																																																																																																																																				2
GCGCC	1																																																																																																																																																																																				1
GCGCG	3																																																																																																																																																																																				3
GCGCT	1																																																																																																																																																																																				1
GCGGC	1																																																																																																																																																																																				1
GCGGG	2																																																																																																																																																																																				2
GCGGT	1																																																																																																																																																																																				1
GCGTG		1																																																																																																																																																																																			1
GCGTT	1																																																																																																																																																																																				1
GCTCG	1																																																																																																																																																																																				1
GCTGC	3																																																																																																																																																																																				3
GCTGT	7																																																																																																																																																																																				7
GGAAA	1																																																																																																																																																																																				1
GGAGA	6	3																																																																																																																																																																																			9
GGAGG	21	5	1																																																																																																																																																																																		27
GGAGT	2																																																																																																																																																																																				2
GGCAC	1																																																																																																																																																																																				1
GGCAG	1																																																																																																																																																																																				1
GGCGG	2																																																																																																																																																																																				2
GGCTT	1																																																																																																																																																																																				1
GGGAA	2																																																																																																																																																																																				2
GGGAG	21	3	1	1																																																																																																																																																																																	26
GGGCC	1																																																																																																																																																																																				1
GGGCG	2																																																																																																																																																																																				2
GGGCT	1																																																																																																																																																																																				1
GGGGA	55	3	1		2																																																																																																																																																																																61
GGGGC	6																																																																																																																																																																																				6
GGGGT	19	3																																																																																																																																																																																			22
GGGTG	3																																																																																																																																																																																				3
GGGTT	1																																																																																																																																																																																				1
GGTGA	1																																																																																																																																																																																				1
GGTGC	1	1																																																																																																																																																																																			2
GGTGG	3	1																																																																																																																																																																																			4
GGTTT	1																																																																																																																																																																																				1
GTCCT	1																																																																																																																																																																																				1
GTCGC	1																																																																																																																																																																																				1
GTCTC	1																																																																																																																																																																																				1
GTGCA	1																																																																																																																																																																																				1
GTGCG	2																																																																																																																																																																																				2
GTGCT	1																																																																																																																																																																																				1
GTGGA	3																																																																																																																																																																																				3
GTGGG	7																																																																																																																																																																																				7
GTGTG	7	1																																																																																																																																																																																			8
GTTTT	2																																																																																																																																																																																				2
TAAAT	3	1																																																																																																																																																																																			4
TAATT	17	4			1																																																																																																																																																																																22
TAGCA	1																																																																																																																																																																																				1
TATAT								1		1		2											1			1																																																																																																																																																											6
TATTT	1																																																																																																																																																																																				1
TCAAG	1																																																																																																																																																																																				1
TCACC	1																																																																																																																																																																																				1
TCAGC	1																																																																																																																																																																																				1
TCCCC	16	5																																																																																																																																																																																			21
TCCGC	1																																																																																																																																																																																				1
TCCTT	1																																																																																																																																																																																				1
TCGCG	1																																																																																																																																																																																				1
TCGCT	2																																																																																																																																																																																				2
TCGTG	1																																																																																																																																																																																				1
TCTCC	3	1																																																																																																																																																																																			4
TCTCG	1																																																																																																																																																																																				1
TCTCT	4																																																																																																																																																																																				4
TGAGA	1																																																																																																																																																																																				1
TGAGG	3																																																																																																																																																																																				3
TGCCG	1																																																																																																																																																																																				1
TGCGG	2																																																																																																																																																																																				2
TGGGA	2																																																																																																																																																																																				2
TGGGG	2																																																																																																																																																																																				2
TGTGA		1																																																																																																																																																																																			1
TGTGC	1																																																																																																																																																																																				1
TGTTC	1																																																																																																																																																																																				1
TTAAA	35	1	3	1																																																																																																																																																																																	40
TTAAT	26	1	3																																																																																																																																																																																		30
TTATA	7																		1																																																																																																																																																																		8
TTCCC	2																																																																																																																																																																																				2
TTCCT	1	1																																																																																																																																																																																			2
TTCTC	1																																																																																																																																																																																				1
TTCTG	1																																																																																																																																																																																				1
TTCTT			1																																																																																																																																																																																		1
TTGAC	1																																																																																																																																																																																				1
TTGTT	1																																																																																																																																																																																				1
TTTAA	102	19	6	1																																																																																																																																																																																	128
TTTAT	1																																																																																																																																																																																				1
TTTCG	2																																																																																																																																																																																				2
TTTGT		1																																																																																																																																																																																			1
TTTTA	1																																																																																																																																																																																				1
TTTTG	1																																																																																																																																																																																				1
AAAAAG	1																																																																																																																																																																																				1
AAAATT	13	5		2		1																																																																																																																																																																															21
AAAGAA	1																																																																																																																																																																																				1
AAATAT	1																																																																																																																																																																																				1
AAATTA	198	70	29	12	5	1	1		1																																																																																																																																																																												317
AAATTT	1																																																																																																																																																																																				1
AACCAC	1																																																																																																																																																																																				1
AACCCT	2	1	1			1	1											1	1	1																							1																										1																																							1																																																																									12
AACCGC	66	46	26	12	10	2	2	3	2				1																																																																																																																																																																								170
AAGAGA	1																																																																																																																																																																																				1
AAGTTA	2																																																																																																																																																																																				2
AATTAA	42	10	5	7																																																																																																																																																																																	64
AATTAG	1																																																																																																																																																																																				1
AATTTT	5	1																																																																																																																																																																																			6
ACACAA	1	1																																																																																																																																																																																			2
ACACAG	8																																																																																																																																																																																				8
ACACAT	3	1																																																																																																																																																																																			4
ACACGC	3																																																																																																																																																																																				3
ACACTG	1																																																																																																																																																																																				1
ACAGAC		1																																																																																																																																																																																			1
ACAGCA	1																																																																																																																																																																																				1
ACATAT	2																																																																																																																																																																																				2
ACCACG	1																																																																																																																																																																																				1
ACCCCC	1																																																																																																																																																																																				1
ACCCTA	3					1																		1													1																									1																																			1																																																																																				8
ACCGCA		1		1																																																																																																																																																																																	2
ACCGCC		1																																																																																																																																																																																			1
ACCTCT	3																																																																																																																																																																																				3
ACGAGG	1																																																																																																																																																																																				1
ACGCAC	2																																																																																																																																																																																				2
ACGCAG	1																																																																																																																																																																																				1
ACGCAT	1																																																																																																																																																																																				1
ACGGCG	2																																																																																																																																																																																				2
ACTGAC	1																																																																																																																																																																																				1
ACTGCG	1																																																																																																																																																																																				1
AGAAGC	1																																																																																																																																																																																				1
AGACAG	1																																																																																																																																																																																				1
AGAGAA	1	1																																																																																																																																																																																			2
AGAGGA	1	1																																																																																																																																																																																			2
AGAGGC	1																																																																																																																																																																																				1
AGAGGG	3																																																																																																																																																																																				3
AGCAGG	1																																																																																																																																																																																				1
AGGGCG	1																																																																																																																																																																																				1
AGGGGA	1																																																																																																																																																																																				1
AGGGGG	1																																																																																																																																																																																				1
AGGGTG	2																																																																																																																																																																																				2
AGGGTT	1	2	3	1		1	1																																																																																																																																																																														9
AGTAGC	1																																																																																																																																																																																				1
AGTGGC	1																																																																																																																																																																																				1
ATACAC	1																																																																																																																																																																																				1
ATACAT			1																																																																																																																																																																																		1
ATATAA	1																																																																																																																																																																																				1
ATATAC	1																																																																																																																																																																																				1
ATCAGC	1																																																																																																																																																																																				1
ATGAAC	1																																																																																																																																																																																				1
ATGTGT	2																																																																																																																																																																																				2
ATTAAA	5	4	1																																																																																																																																																																																		10
CAAAAA	1																																																																																																																																																																																				1
CAACCG		1			2																																																																																																																																																																																3
CAAGCA	1																																																																																																																																																																																				1
CACAAG	2																																																																																																																																																																																				2
CACACC	2																																																																																																																																																																																				2
CACACG	7	3																																																																																																																																																																																			10
CACACT		1																																																																																																																																																																																			1
CACAGG	1	1																																																																																																																																																																																			2
CACATA	1																																																																																																																																																																																				1
CACATG	1																																																																																																																																																																																				1
CACCAA	1																																																																																																																																																																																				1
CACCAT	2																																																																																																																																																																																				2
CACCCA	1																																																																																																																																																																																				1
CACCCT	2																																																																																																																																																																																				2
CACCGA	1																																																																																																																																																																																				1
CACCGC	1																																																																																																																																																																																				1
CACGCA	10	1																																																																																																																																																																																			11
CACTCA	1																																																																																																																																																																																				1
CACTGC	1																																																																																																																																																																																				1
CAGACA	1	1																																																																																																																																																																																			2
CAGACG	1																																																																																																																																																																																				1
CAGAGG	1																																																																																																																																																																																				1
CAGCAA	1																																																																																																																																																																																				1
CAGCAC	1																																																																																																																																																																																				1
CAGCGA	1																																																																																																																																																																																				1
CAGCGG	1																																																																																																																																																																																				1
CAGCGT	1																																																																																																																																																																																				1
CAGCTG	1																																																																																																																																																																																				1
CAGGCA		1																																																																																																																																																																																			1
CATACA	1																																																																																																																																																																																				1
CATATG	1																																																																																																																																																																																				1
CATCGG	1																																																																																																																																																																																				1
CATGCG	1																																																																																																																																																																																				1
CCACCC	2																																																																																																																																																																																				2
CCACCG		1																																																																																																																																																																																			1
CCACTG	1																																																																																																																																																																																				1
CCAGCG	1																																																																																																																																																																																				1
CCATCA		1																																																																																																																																																																																			1
CCATCC	1																																																																																																																																																																																				1
CCCACA	1																																																																																																																																																																																				1
CCCACC	1																																																																																																																																																																																				1
CCCCAC	1																																																																																																																																																																																				1
CCCCAT	1																																																																																																																																																																																				1
CCCCCT	12	1																																																																																																																																																																																			13
CCCCTC	8	2																																																																																																																																																																																			10
CCCGCG	1																																																																																																																																																																																				1
CCCGCT	1																																																																																																																																																																																				1
CCCTAA				1													1							1									1								1																							1																																																																																															1																					1	8
CCCTCC	10																																																																																																																																																																																				10
CCCTCT	7																																																																																																																																																																																				7
CCCTGC		1																																																																																																																																																																																			1
CCGCAA	3	4		3			1																																																																																																																																																																														11
CCGCAG	1																																																																																																																																																																																				1
CCGCCA	3																																																																																																																																																																																				3
CCGTCA	1																																																																																																																																																																																				1
CCGTCG	1																																																																																																																																																																																				1
CCTAAC		1		1		1		1		1		1	1					1	1																1																																										1																						1																												1																																																						13
CCTCCA	1																																																																																																																																																																																				1
CCTCCC	6																																																																																																																																																																																				6
CCTCCG	1																																																																																																																																																																																				1
CCTCTC	2		1																																																																																																																																																																																		3
CCTCTG		1																																																																																																																																																																																			1
CCTGGC	1																																																																																																																																																																																				1
CGAACG	1																																																																																																																																																																																				1
CGACCG	1																																																																																																																																																																																				1
CGACGC	1																																																																																																																																																																																				1
CGAGGA	1																																																																																																																																																																																				1
CGCACA	3	1					1																																																																																																																																																																														5
CGCAGC	2																																																																																																																																																																																				2
CGCATC	1																																																																																																																																																																																				1
CGCCTC	3				1																																																																																																																																																																																4
CGCCTG	4																																																																																																																																																																																				4
CGCGGC	2																																																																																																																																																																																				2
CGCTGC	3																																																																																																																																																																																				3
CGCTGG	1																																																																																																																																																																																				1
CGGCAG	2																																																																																																																																																																																				2
CGGCAT	1																																																																																																																																																																																				1
CGGCCT	1																																																																																																																																																																																				1
CGGCGA	1																																																																																																																																																																																				1
CGGTCG	1																																																																																																																																																																																				1
CGGTGC	1																																																																																																																																																																																				1
CGGTTG	7	3	1																																																																																																																																																																																		11
CGTCCT	3																																																																																																																																																																																				3
CGTCGC	1																																																																																																																																																																																				1
CGTCGG	1																																																																																																																																																																																				1
CGTGGT			1	1	1		2																																																																																																																																																																														5
CGTGTG	5	2																																																																																																																																																																																			7
CGTGTT	1																																																																																																																																																																																				1
CGTTGC	1																																																																																																																																																																																				1
CTAACC		1			1														1			1							1																																																												1																																																																																												6
CTCACA	1																																																																																																																																																																																				1
CTCACC		1																																																																																																																																																																																			1
CTCACT	1																																																																																																																																																																																				1
CTCCAC	1																																																																																																																																																																																				1
CTCCAG	1																																																																																																																																																																																				1
CTCCCC	6																																																																																																																																																																																				6
CTCCCT	2	1																																																																																																																																																																																			3
CTCCGC	1																																																																																																																																																																																				1
CTCCTT		1																																																																																																																																																																																			1
CTCGCT	1																																																																																																																																																																																				1
CTCGGA	1																																																																																																																																																																																				1
CTCTCA	1																																																																																																																																																																																				1
CTCTCC	3																																																																																																																																																																																				3
CTCTCG	12	1																																																																																																																																																																																			13
CTCTGC	1																																																																																																																																																																																				1
CTCTGT	1																																																																																																																																																																																				1
CTGCCA	3	1																																																																																																																																																																																			4
CTGCTC	2																																																																																																																																																																																				2
CTGTCT		1																																																																																																																																																																																			1
CTGTGT	2																																																																																																																																																																																				2
CTGTTT		1																																																																																																																																																																																			1
CTTCCT	1																																																																																																																																																																																				1
CTTTCT	1																																																																																																																																																																																				1
GAAAAA			1																																																																																																																																																																																		1
GAAAGC	1	1																																																																																																																																																																																			2
GAAAGG	1																																																																																																																																																																																				1
GAAGCG	1																																																																																																																																																																																				1
GAATTA	1																																																																																																																																																																																				1
GACAGA	2																																																																																																																																																																																				2
GACGAG	2																																																																																																																																																																																				2
GACGAT	1																																																																																																																																																																																				1
GACGCG	1																																																																																																																																																																																				1
GAGACA	1																																																																																																																																																																																				1
GAGAGG	5	1																																																																																																																																																																																			6
GAGCAG	1																																																																																																																																																																																				1
GAGGAA	2																																																																																																																																																																																				2
GAGGAC		1																																																																																																																																																																																			1
GAGGAT	1																																																																																																																																																																																				1
GAGGCA	3																																																																																																																																																																																				3
GAGGGA	2	1																																																																																																																																																																																			3
GAGGGG	14	1																																																																																																																																																																																			15
GAGGGT	1																																																																																																																																																																																				1
GAGTGG	1																																																																																																																																																																																				1
GATGCC	1																																																																																																																																																																																				1
GCAAAG			1																																																																																																																																																																																		1
GCAACA	1																																																																																																																																																																																				1
GCAACC	2	1	2					1																																																																																																																																																																													6
GCAACG	1																																																																																																																																																																																				1
GCACAC	22	18	1																																																																																																																																																																																		41
GCACCT	1																																																																																																																																																																																				1
GCAGCC	2																																																																																																																																																																																				2
GCAGCG	1																																																																																																																																																																																				1
GCAGTG	1																																																																																																																																																																																				1
GCATAA	1																																																																																																																																																																																				1
GCATAG		1																																																																																																																																																																																			1
GCCACA	1																																																																																																																																																																																				1
GCCACC	6																																																																																																																																																																																				6
GCCCTC	1																																																																																																																																																																																				1
GCCGCT	2																																																																																																																																																																																				2
GCGAAA	1																																																																																																																																																																																				1
GCGACG	3																																																																																																																																																																																				3
GCGCAG	1																																																																																																																																																																																				1
GCGCCG	1																																																																																																																																																																																				1
GCGCGT	2																																																																																																																																																																																				2
GCGGCA	2	1																																																																																																																																																																																			3
GCGGCC	2																																																																																																																																																																																				2
GCGGCT	1																																																																																																																																																																																				1
GCGGGT	2																																																																																																																																																																																				2
GCGGTG	1																																																																																																																																																																																				1
GCGGTT	11	6	3	1	3		1																																																																																																																																																																														25
GCGTCG	1																																																																																																																																																																																				1
GCGTGG	1																																																																																																																																																																																				1
GCGTGT	3																																																																																																																																																																																				3
GCTCCT	1																																																																																																																																																																																				1
GCTCTC		1																																																																																																																																																																																			1
GCTGCC	4																																																																																																																																																																																				4
GCTGCG	1																																																																																																																																																																																				1
GCTGGC	4																																																																																																																																																																																				4
GCTGGG	2																																																																																																																																																																																				2
GCTTCT	1																																																																																																																																																																																				1
GCTTTC	1																																																																																																																																																																																				1
GGAAGA	1																																																																																																																																																																																				1
GGAGAG	1	1																																																																																																																																																																																			2
GGAGAT	2																																																																																																																																																																																				2
GGAGCA	1																																																																																																																																																																																				1
GGAGGG	4																																																																																																																																																																																				4
GGCAAC	1																																																																																																																																																																																				1
GGCACG	2																																																																																																																																																																																				2
GGCAGC	1																																																																																																																																																																																				1
GGCAGG	1																																																																																																																																																																																				1
GGCCGC	2	1																																																																																																																																																																																			3
GGCGAA	1																																																																																																																																																																																				1
GGCGAC	2																																																																																																																																																																																				2
GGCGAG	1																																																																																																																																																																																				1
GGCGAT	1																																																																																																																																																																																				1
GGCGCA	1																																																																																																																																																																																				1
GGCGGT	1	1																																																																																																																																																																																			2
GGCTGT	1																																																																																																																																																																																				1
GGGAAG	1																																																																																																																																																																																				1
GGGACA		1																																																																																																																																																																																			1
GGGAGA	5	1																																																																																																																																																																																			6
GGGAGG	3	1																																																																																																																																																																																			4
GGGATG	1				1																																																																																																																																																																																2
GGGCAC	1																																																																																																																																																																																				1
GGGCGA	1																																																																																																																																																																																				1
GGGCGC	1																																																																																																																																																																																				1
GGGCGG	1																																																																																																																																																																																				1
GGGGAG	3	1																																																																																																																																																																																			4
GGGGGA	3																																																																																																																																																																																				3
GGGGGT	1																																																																																																																																																																																				1
GGGTGT				2																																																																																																																																																																																	2
GGGTTA																																			1																																																																																																																																																		1
GGTCTC	1																																																																																																																																																																																				1
GGTGAG	1																																																																																																																																																																																				1
GGTGCA		1																																																																																																																																																																																			1
GGTGCT	1																																																																																																																																																																																				1
GGTGGC	4																																																																																																																																																																																				4
GGTTAG	2	1																																																																																																																																																																																			3
GGTTGC	34	12	12	6	5	4	1				2		1																																																																																																																																																																								77
GTAAGT	1																																																																																																																																																																																				1
GTATGC	1																																																																																																																																																																																				1
GTATGT	3																																																																																																																																																																																				3
GTCCTC	1																																																																																																																																																																																				1
GTCGAA	1	1																																																																																																																																																																																			2
GTCGCT	2																																																																																																																																																																																				2
GTCTCA				1																																																																																																																																																																																	1
GTCTGT	2																																																																																																																																																																																				2
GTCTTC	1																																																																																																																																																																																				1
GTGCAC	1																																																																																																																																																																																				1
GTGCGC	1																																																																																																																																																																																				1
GTGCGT	9	3	1																																																																																																																																																																																		13
GTGCTG	1																																																																																																																																																																																				1
GTGGGG	1																																																																																																																																																																																				1
GTGGGT	2	1																																																																																																																																																																																			3
GTGTAT	3																																																																																																																																																																																				3
GTGTCA			1																																																																																																																																																																																		1
GTGTCT	3																																																																																																																																																																																				3
GTGTGC	12	3	2																																																																																																																																																																																		17
GTGTGG	2																																																																																																																																																																																				2
GTTAAA	3																																																																																																																																																																																				3
GTTAAG	3	1																																																																																																																																																																																			4
GTTAGG	8	3	3	4	2	1	2	1	1																																																																																																																																																																												25
GTTGCT	1																																																																																																																																																																																				1
GTTGTG	1																																																																																																																																																																																				1
GTTTGT	1																																																																																																																																																																																				1
TAAAAT	2	2			1																																																																																																																																																																																5
TAACCC	1	1			1																																																																																																																																																																																3
TAACCT		1																																																																																																																																																																																			1
TAACTC	1																																																																																																																																																																																				1
TAATTC	1																																																																																																																																																																																				1
TAATTT	23	7	2	1	1																																																																																																																																																																																34
TACACG	1																																																																																																																																																																																				1
TACTCG		1																																																																																																																																																																																			1
TAGGGT	1	2	1																																																																																																																																																																																		4
TATATG	1	1																																																																																																																																																																																			2
TATGTA	1																																																																																																																																																																																				1
TCCACC	1																																																																																																																																																																																				1
TCCCAC	1																																																																																																																																																																																				1
TCCCCA		1																																																																																																																																																																																			1
TCCCCC	2																																																																																																																																																																																				2
TCCGCA		1																																																																																																																																																																																			1
TCCTGC	1																																																																																																																																																																																				1
TCGACA	1																																																																																																																																																																																				1
TCGCCG	3																																																																																																																																																																																				3
TCGCCT	1																																																																																																																																																																																				1
TCGCTG	1																																																																																																																																																																																				1
TCGGCG	1																																																																																																																																																																																				1
TCGTCA		1																																																																																																																																																																																			1
TCGTCC	2																																																																																																																																																																																				2
TCTCCC	1	1																																																																																																																																																																																			2
TCTCGG	1																																																																																																																																																																																				1
TCTCGT						1																																																																																																																																																																															1
TCTGTG	1				1																																																																																																																																																																																2
TCTTCC			1																																																																																																																																																																																		1
TCTTTG		1																																																																																																																																																																																			1
TGCAGC	2																																																																																																																																																																																				2
TGCCGC	1																																																																																																																																																																																				1
TGCCTC			1																																																																																																																																																																																		1
TGCCTG	1																																																																																																																																																																																				1
TGCGGC	2	1																																																																																																																																																																																			3
TGCGGT	2	1																																																																																																																																																																																			3
TGCGTG	26	2																																																																																																																																																																																			28
TGCTGT	3																																																																																																																																																																																				3
TGGAGG		1																																																																																																																																																																																			1
TGGCGC	1																																																																																																																																																																																				1
TGGGGA	1																																																																																																																																																																																				1
TGGGGG	1																																																																																																																																																																																				1
TGGGTG		1																																																																																																																																																																																			1
TGGTGA						2																																																																																																																																																																															2
TGTCCG	1																																																																																																																																																																																				1
TGTCGT	1																																																																																																																																																																																				1
TGTCTG	2	1																																																																																																																																																																																			3
TGTGCA		1																																																																																																																																																																																			1
TGTGCG	2	1																																																																																																																																																																																			3
TGTGGG	2																																																																																																																																																																																				2
TGTGTA	3	1																																																																																																																																																																																			4
TGTGTC	1																																																																																																																																																																																				1
TGTTGC	1	1	1																																																																																																																																																																																		3
TTAAAA	39	13	5	2		2																																																																																																																																																																															61
TTAAAG	4																																																																																																																																																																																				4
TTAACT	2																																																																																																																																																																																				2
TTAATA	1																																																																																																																																																																																				1
TTAATC	1																																																																																																																																																																																				1
TTAATT	69	24	11	2	1																																																																																																																																																																																107
TTCCCC	1	1																																																																																																																																																																																			2
TTGCCC		1																																																																																																																																																																																			1
TTGTCG	1																																																																																																																																																																																				1
TTGTTT	1																																																																																																																																																																																				1
TTTAAC	1																																																																																																																																																																																				1
TTTAAT	83	26	10	4				1																																																																																																																																																																													124
TTTCCC		1																																																																																																																																																																																			1
TTTTAA	1																																																																																																																																																																																				1
TTTTAC	1																																																																																																																																																																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1																																																																																																																																																																		2
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	4	1																																																																																																																																																																	7
AC/GT	-	-	-	2449	2083	1410	942	669	383	255	173	96	67	58	33	22	10	21	10	7	4	10	5	9	4		5	1		2		1	3				1	1	1				1																																										1																																																																																																8737
AG/CT	-	-	-	1724	688	268	82	28	13	4	6		1																																																																																																																																																																								2814
AT/AT	-	-	-	350	341	247	101	40	13	8	6	3		1		1																																																																																																																																																																					1111
CG/CG	-	-	-	186	22	6	1																																																																																																																																																																														215
AAC/GTT	-	-	5	3	2	1	2																																																																																																																																																																														13
AAG/CTT	-	-	5																																																																																																																																																																																		5
AAT/ATT	-	-	15	1		1																																																																																																																																																																															17
ACC/GGT	-	-	241	46	15	6	1																																																																																																																																																																														309
ACG/CGT	-	-	53	10	1																																																																																																																																																																																64
ACT/AGT	-	-	1																																																																																																																																																																																		1
AGC/CTG	-	-	753	216	64	13	11																																																																																																																																																																														1057
AGG/CCT	-	-	129	28	9	5	3	1																																																																																																																																																																													175
ATC/ATG	-	-	7	1	2																																																																																																																																																																																10
CCG/CGG	-	-	199	30	4			1			1																																																																																																																																																																										235
AAAC/GTTT	-	15	3	2																																																																																																																																																																																	20
AAAG/CTTT	-	1																																																																																																																																																																																			1
AAAT/ATTT	-	8	1																																																																																																																																																																																		9
AACC/GGTT	-	2			2																																																																																																																																																																																4
AACG/CGTT	-	1																																																																																																																																																																																			1
AAGG/CCTT	-	1	1																																																																																																																																																																																		2
AATC/ATTG	-	1																																																																																																																																																																																			1
AATG/ATTC	-	4																																																																																																																																																																																			4
ACAG/CTGT	-	58	19	11	3	1	1																																																																																																																																																																														93
ACAT/ATGT	-	8	3	1																																																																																																																																																																																	12
ACCC/GGGT	-	35	7	1																																																																																																																																																																																	43
ACGC/CGTG	-	73	22	5		1																																																																																																																																																																															101
ACGG/CCGT	-	3																																																																																																																																																																																			3
ACTC/AGTG	-	20	11	3	1	1			1																																																																																																																																																																												37
ACTG/AGTC	-	1																																																																																																																																																																																			1
AGCG/CGCT	-	17	7																																																																																																																																																																																		24
AGGC/CCTG	-	8																																																																																																																																																																																			8
AGGG/CCCT	-	133	25	5	1	1																																																																																																																																																																															165
ATCC/ATGG	-	4		1																																																																																																																																																																																	5
ATGC/ATGC	-	4	1																																																																																																																																																																																		5
CCCG/CGGG	-	12	4	1																																																																																																																																																																																	17
AAAAC/GTTTT	8	1																																																																																																																																																																																			9
AAAAG/CTTTT	7	1	1																																																																																																																																																																																		9
AAAAT/ATTTT	3																																																																																																																																																																																				3
AAACC/GGTTT	2																																																																																																																																																																																				2
AAACG/CGTTT	2	1																																																																																																																																																																																			3
AAAGC/CTTTG	7	2																																																																																																																																																																																			9
AAAGG/CCTTT	5	1																																																																																																																																																																																			6
AAATT/AATTT	349	70	33	21	7	3				2																																																																																																																																																																											485
AACAC/GTGTT	3																																																																																																																																																																																				3
AACAG/CTGTT	3																																																																																																																																																																																				3
AACCC/GGGTT	1	1																																																																																																																																																																																			2
AACGC/CGTTG	1																																																																																																																																																																																				1
AACGG/CCGTT	1																																																																																																																																																																																				1
AACTC/AGTTG	1																																																																																																																																																																																				1
AACTG/AGTTC	1																																																																																																																																																																																				1
AACTT/AAGTT	3																																																																																																																																																																																				3
AAGAG/CTCTT	7																																																																																																																																																																																				7
AAGCC/CTTGG	2																																																																																																																																																																																				2
AAGCG/CGCTT	8																																																																																																																																																																																				8
AAGGG/CCCTT	16		2	1																																																																																																																																																																																	19
AAGTC/ACTTG	9	2	1																																																																																																																																																																																		12
AATAT/ATATT	8							1		1		2							1				1			1																																																																																																																																																											15
ACACC/GGTGT	9	1					1																																																																																																																																																																														11
ACACG/CGTGT	1		1																																																																																																																																																																																		2
ACACT/AGTGT	1																																																																																																																																																																																				1
ACAGC/CTGTG	13		1																																																																																																																																																																																		14
ACAGG/CCTGT	2																																																																																																																																																																																				2
ACATC/ATGTG	1	1																																																																																																																																																																																			2
ACCCC/GGGGT	73	4																																																																																																																																																																																			77
ACCCG/CGGGT		1																																																																																																																																																																																			1
ACCGC/CGGTG	10	2																																																																																																																																																																																			12
ACCTC/AGGTG	11	4																																																																																																																																																																																			15
ACCTG/AGGTC			1																																																																																																																																																																																		1
ACGAG/CGTCT	4																																																																																																																																																																																				4
ACGCC/CGTGG	6	1																																																																																																																																																																																			7
ACGCG/CGCGT	3																																																																																																																																																																																				3
ACGGC/CCGTG	6																																																																																																																																																																																				6
ACGGG/CCCGT	1																																																																																																																																																																																				1
ACTCC/AGTGG	12																																																																																																																																																																																				12
ACTCG/AGTCG	2																																																																																																																																																																																				2
ACTGC/AGTGC	2	2																																																																																																																																																																																			4
AGAGC/CTCTG	4																																																																																																																																																																																				4
AGAGG/CCTCT	72	16	2	2				1																				1																																																																																																																																																									94
AGATG/ATCTC	4																																																																																																																																																																																				4
AGCAT/ATGCT	1																																																																																																																																																																																				1
AGCCC/CTGGG	1																																																																																																																																																																																				1
AGCCG/CGGCT	1																																																																																																																																																																																				1
AGCGC/CGCTG	9																																																																																																																																																																																				9
AGCGG/CCGCT	6																																																																																																																																																																																				6
AGCTC/AGCTG	1																																																																																																																																																																																				1
AGGCG/CCTCG	6																																																																																																																																																																																				6
AGGGC/CCCTG	7																																																																																																																																																																																				7
AGGGG/CCCCT	281	34	11	3	2																																																																																																																																																																																331
ATCCC/ATGGG	5																																																																																																																																																																																				5
ATCGC/ATGCG	1																																																																																																																																																																																				1
ATGCC/ATGGC	1																																																																																																																																																																																				1
CCCCG/CGGGG	27		1																																																																																																																																																																																		28
CCCGG/CCGGG	1																																																																																																																																																																																				1
CCGCG/CGCGG	9																																																																																																																																																																																				9
AAAAAC/GTTTTT	2																																																																																																																																																																																				2
AAAAAG/CTTTTT	2		1																																																																																																																																																																																		3
AAAAGT/ACTTTT	1																																																																																																																																																																																				1
AAAATT/AATTTT	480	162	63	30	8	4	1	1	1																																																																																																																																																																												750
AAACAC/GTGTTT	2	1																																																																																																																																																																																			3
AAACAG/CTGTTT		1																																																																																																																																																																																			1
AAAGAC/CTTTGT		1																																																																																																																																																																																			1
AAAGAG/CTCTTT	3	1																																																																																																																																																																																			4
AAAGCG/CGCTTT	3	1																																																																																																																																																																																			4
AAAGGC/CCTTTG			1																																																																																																																																																																																		1
AAAGGG/CCCTTT	1	1																																																																																																																																																																																			2
AAAGTT/AACTTT	12																																																																																																																																																																																				12
AAATAT/ATATTT	2																																																																																																																																																																																				2
AAATTT/AAATTT	1																																																																																																																																																																																				1
AACACC/GGTGTT	1																																																																																																																																																																																				1
AACACG/CGTGTT	1																																																																																																																																																																																				1
AACAGC/CTGTTG	8	1	1																																																																																																																																																																																		10
AACATG/ATGTTC	1																																																																																																																																																																																				1
AACCAC/GGTTGT	2																																																																																																																																																																																				2
AACCCT/AGGGTT	18	12	8	7	4	5	4	2	1	1		1	1				1	2	3	1		1		2					1				1		2		1				1		1																			1		1					1								1												1								1		1									1																			1																																1																					1	92
AACCGC/CGGTTG	125	75	44	23	20	6	5	4	2		2		2																																																																																																																																																																								308
AACCTT/AAGGTT	3	2																																																																																																																																																																																			5
AACGAC/CGTTGT	2																																																																																																																																																																																				2
AACGAG/CGTTCT						1																																																																																																																																																																															1
AACGCG/CGCGTT	1																																																																																																																																																																																				1
AACGGC/CCGTTG	3																																																																																																																																																																																				3
AACTCT/AGAGTT	1																																																																																																																																																																																				1
AAGACG/CGTCTT	1																																																																																																																																																																																				1
AAGAGG/CCTCTT	5	1	1																																																																																																																																																																																		7
AAGATT/AATCTT	1																																																																																																																																																																																				1
AAGCAC/CTTGTG	3																																																																																																																																																																																				3
AAGCAG/CTGCTT	2																																																																																																																																																																																				2
AAGCAT/ATGCTT	1																																																																																																																																																																																				1
AAGCGG/CCGCTT	1																																																																																																																																																																																				1
AAGGAG/CCTTCT		1																																																																																																																																																																																			1
AAGGCG/CCTTCG	2																																																																																																																																																																																				2
AAGGGC/CCCTTG		1																																																																																																																																																																																			1
AAGGGG/CCCCTT	3	1																																																																																																																																																																																			4
AAGTCG/ACTTCG	1	1																																																																																																																																																																																			2
AAGTGT/ACACTT	1																																																																																																																																																																																				1
AATATT/AATATT	1																																																																																																																																																																																				1
AATTAG/AATTCT	3																																																																																																																																																																																				3
ACACAG/CTGTGT	20	3			1																																																																																																																																																																																24
ACACAT/ATGTGT	17	2																																																																																																																																																																																			19
ACACCC/GGGTGT	10	2		2																																																																																																																																																																																	14
ACACCG/CGGTGT	1																																																																																																																																																																																				1
ACACGC/CGTGTG	104	34	4				1																																																																																																																																																																														143
ACACGG/CCGTGT	1																																																																																																																																																																																				1
ACACGT/ACGTGT	1																																																																																																																																																																																				1
ACACTC/AGTGTG	2	1																																																																																																																																																																																			3
ACACTG/AGTGTC	2		1																																																																																																																																																																																		3
ACAGAG/CTCTGT	5	1																																																																																																																																																																																			6
ACAGCC/CTGTGG	2																																																																																																																																																																																				2
ACAGCG/CGCTGT	4																																																																																																																																																																																				4
ACAGGC/CCTGTG	2	2																																																																																																																																																																																			4
ACAGGG/CCCTGT		1																																																																																																																																																																																			1
ACATAT/ATATGT	5	1	1																																																																																																																																																																																		7
ACATCG/ATGTCG	1																																																																																																																																																																																				1
ACATGC/ATGTGC	1	1																																																																																																																																																																																			2
ACCACG/CGTGGT	1		1	1	1		2																																																																																																																																																																														6
ACCAGC/CTGGTG	3																																																																																																																																																																																				3
ACCATC/ATGGTG	2	1				2																																																																																																																																																																															5
ACCCCC/GGGGGT	8																																																																																																																																																																																				8
ACCCGC/CGGGTG	2																																																																																																																																																																																				2
ACCCTC/AGGGTG	6	1																																																																																																																																																																																			7
ACCGAG/CGGTCT	2																																																																																																																																																																																				2
ACCGCC/CGGTGG	16	3																																																																																																																																																																																			19
ACCGCG/CGCGGT	2																																																																																																																																																																																				2
ACCGGC/CCGGTG	1																																																																																																																																																																																				1
ACCGTC/ACGGTG	1																																																																																																																																																																																				1
ACCTCC/AGGTGG	3	1																																																																																																																																																																																			4
ACCTCT/AGAGGT	3																																																																																																																																																																																				3
ACCTGC/AGGTGC	1	1																																																																																																																																																																																			2
ACGAGG/CCTCGT	10	1																																																																																																																																																																																			11
ACGAGT/ACTCGT		1																																																																																																																																																																																			1
ACGATG/ATCGTC	1	1																																																																																																																																																																																			2
ACGCAG/CGTCTG	2																																																																																																																																																																																				2
ACGCAT/ATGCGT	2																																																																																																																																																																																				2
ACGCCC/CGTGGG	1																																																																																																																																																																																				1
ACGCCG/CGGCGT	4																																																																																																																																																																																				4
ACGCGC/CGCGTG	3																																																																																																																																																																																				3
ACGCGG/CCGCGT	1																																																																																																																																																																																				1
ACGCTG/AGCGTC	1																																																																																																																																																																																				1
ACGGCG/CCGTCG	13																																																																																																																																																																																				13
ACGGGC/CCCGTG	3																																																																																																																																																																																				3
ACGTGC/ACGTGC	1																																																																																																																																																																																				1
ACTCCC/AGTGGG	2																																																																																																																																																																																				2
ACTCGG/AGTCCG	1																																																																																																																																																																																				1
ACTCTC/AGAGTG	2																																																																																																																																																																																				2
ACTGAG/AGTCTC				1																																																																																																																																																																																	1
ACTGCC/AGTGGC	7	1																																																																																																																																																																																			8
ACTGCG/AGTCGC	1																																																																																																																																																																																				1
ACTGCT/AGCAGT	1																																																																																																																																																																																				1
AGAGCG/CGCTCT	13	2																																																																																																																																																																																			15
AGAGGC/CCTCTG	6	1	1																																																																																																																																																																																		8
AGAGGG/CCCTCT	31	6	1																																																																																																																																																																																		38
AGATGG/ATCTCC	2																																																																																																																																																																																				2
AGCAGG/CCTGCT	7																																																																																																																																																																																				7
AGCATC/ATGCTG	1																																																																																																																																																																																				1
AGCCCC/CTGGGG	2																																																																																																																																																																																				2
AGCCGC/CGGCTG	9	1																																																																																																																																																																																			10
AGCGCC/CGCTGG	7																																																																																																																																																																																				7
AGCGGC/CCGCTG	17	1																																																																																																																																																																																			18
AGCGGG/CCCGCT	1																																																																																																																																																																																				1
AGCTCC/AGCTGG	1																																																																																																																																																																																				1
AGCTGC/AGCTGC	3																																																																																																																																																																																				3
AGGATG/ATCCTC	1																																																																																																																																																																																				1
AGGCAT/ATGCCT		1																																																																																																																																																																																			1
AGGCCG/CCTCGG	1																																																																																																																																																																																				1
AGGCGC/CCTGCG	6																																																																																																																																																																																				6
AGGCGG/CCGCCT	5				1																																																																																																																																																																																6
AGGGCC/CCCTGG	1																																																																																																																																																																																				1
AGGGCG/CCCTCG	4																																																																																																																																																																																				4
AGGGGC/CCCCTG	1	1																																																																																																																																																																																			2
AGGGGG/CCCCCT	72	6																																																																																																																																																																																			78
ATATGC/ATATGC	1																																																																																																																																																																																				1
ATCCCC/ATGGGG	4	1			1																																																																																																																																																																																6
ATCCGC/ATGCGG	1	1																																																																																																																																																																																			2
ATCGCC/ATGGCG	1																																																																																																																																																																																				1
ATCGGC/ATGCCG	3																																																																																																																																																																																				3
ATGCGC/ATGCGC	1																																																																																																																																																																																				1
CCCCCG/CGGGGG	1																																																																																																																																																																																				1
CCCGCG/CGCGGG	2																																																																																																																																																																																				2
CCGCGG/CCGCGG	6	1																																																																																																																																																																																			7
CCGGCG/CCGGCG	1																																																																																																																																																																																				1
